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The Carrot Nuclear Genome and Comparative Analysis

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The Carrot Genome

Part of the book series: Compendium of Plant Genomes ((CPG))

Abstract

The first draft of the carrot genome of an orange inbred line, “DC-27,” was published in 2014. However, the genome assembly was fragmented and not assembled to the chromosome level, which limited its application for comprehensive genetic and genomic analyses. In 2016, a high-quality chromosome level, genome assembly of a doubled-haploid orange carrot DH1 was published, which rapidly advanced carrot genetic and genomic studies. The sequenced genome enabled the ability to identify candidate genes underlying important agronomic and nutrition-related traits such as root development, the accumulation of terpenoids, β-carotenes, and anthocyanins. Genome-level contributions include the clarification of phylogenetic relationships within carrot germplasm and the elucidation of the evolutionary history within the Euasterid II and Euasterid I clades. In this chapter, a description of the history of efforts made to characterize the carrot genome in the pre- and post-genomic era and the partners involved in the development of the high-quality carrot genome assembly are also described.

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Authors and Affiliations

  1. Department of Horticultural Sciences, Plants for Human Health Institute, North Carolina State University, 600 Laureate Way, Kannapolis, NC, 28081, USA

    Massimo Iorizzo

  2. Faculty of Biotechnology and Horticulture, Institute of Plant Biology and Biotechnology, University of Agriculture in Krakow, Krakow, Poland

    Alicja Macko-Podgórni

  3. USDA ARS Vegetable Crops Research Unit, University of Wisconsin-Madison, 1575 Linden Dr., Madison, WI, 53706, USA

    Douglas Senalik & Philipp W. Simon

  4. University of California, Davis, Seed Biotechnology Center and Plant Breeding Center, Davis, CA, USA

    Allen Van Deynze

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  1. Massimo Iorizzo
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  2. Alicja Macko-Podgórni
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  3. Douglas Senalik
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  4. Allen Van Deynze
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  5. Philipp W. Simon
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Correspondence to Massimo Iorizzo .

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Editors and Affiliations

  1. Vegetable Crops Research Unit, USDA-ARS, Madison, WI, USA

    Philipp Simon

  2. Plants for Human Health Institute, North Carolina State University , Kannapolis, NC, USA

    Massimo Iorizzo

  3. University of Agriculture in Krakow, Krakow, Poland

    Dariusz Grzebelus

  4. Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Krakow, Poland

    Rafal Baranski

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Iorizzo, M., Macko-Podgórni, A., Senalik, D., Van Deynze, A., Simon, P.W. (2019). The Carrot Nuclear Genome and Comparative Analysis. In: Simon, P., Iorizzo, M., Grzebelus, D., Baranski, R. (eds) The Carrot Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-030-03389-7_11

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