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Modeling Neuron–Glia Interactions with the Brian 2 Simulator

  • Marcel StimbergEmail author
  • Dan F. M. Goodman
  • Romain Brette
  • Maurizio De PittàEmail author
Chapter
Part of the Springer Series in Computational Neuroscience book series (NEUROSCI)

Abstract

In spite of compelling evidence that glial cells could crucially regulate neural network activity, the vast majority of available neural simulators ignores the possible contribution of glia to neuronal physiology. Here, we show how to model glial physiology and neuron–glia interactions in the Brian 2 simulator. Brian 2 offers facilities to explicitly describe any model in mathematical terms with limited and simple simulator-specific syntax, automatically generating high-performance code from the user-provided descriptions. The flexibility of this approach allows us to model not only networks of neurons, but also individual glial cells, chemical coupling of glial cells, and the interaction between glial cells and synapses. We therefore conclude that Brian 2 provides an ideal platform to efficiently simulate glial physiology, and specifically, the influence of astrocytes on neural activity.

Keywords

Brian 2 simulator Neuron–glial interactions Tripartite synapses Neuron–glial networks Astrocyte Gliotransmission 

Notes

Acknowledgements

This work was supported by Agence Nationale de la Recherche (Axode ANR-14-CE13-0003). MDP acknowledges the support of the Junior Leader Fellowship Program by “la Caixa” Banking Foundation, as well as the support by the Basque Government through the BERC 2018-2021 program and by the Spanish Ministry of Science, Innovation and Universities: BCAM Severo Ochoa accreditation SEV-2017-0718. Writing of this chapter was also partly supported by a Marie Skłodowska-Curie International Outgoing Fellowship to MDP from the European Commission (Project 331486 “Neuron-Astro-Nets”).

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Copyright information

© Springer Nature Switzerland AG 2019

Authors and Affiliations

  1. 1.Sorbonne Université, INSERM, CNRS, Institut de la VisionParisFrance
  2. 2.Department of Electrical and Electronic EngineeringImperial College LondonLondonUK
  3. 3.BCAM - Basque Center for Applied MathematicsBilbaoSpain
  4. 4.Department of Statistics and NeurobiologyThe University of ChicagoChicagoUSA
  5. 5.Team BEAGLE, INRIA Rhône-AlpesVilleurbanneFrance

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