Evolution of Microbial Communities; or, On the Origins of Bacterial Species

  • David W. Ussery
  • Trudy M. Wassenaar
  • Stefano Borini
Part of the Computational Biology book series (COBO, volume 8)


Microbial Community Synthetic Biology Core Genome Genome Island Shigella Flexneri 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.


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  1. Blount ZD, Borland CZ, Lenski RE, [Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli ", Proc Natl Acad Sci USA, 105:7899–7906, (2008). [PMID: 18524956]CrossRefGoogle Scholar
  2. Blum G, Ott M, Lischewski A, Ritter A, Imrich H, Tschäpe H, and Hacker J, "Excision of large DNA regions termed pathogenicity islands from tRNA-specific loci in the chromosome of an Escherichia coli wild-type pathogen", Inf Immun, 62:606–614 (1994). [PMID: 7507897]Google Scholar
  3. Jin, et al., "Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157", Nucl Acids Res, 30:4432–4441 (2002). [PMID: 12384590].Google Scholar
  4. Pál C, Papp B, Lercher MJ, Csermely P, Oliver SG, and Hurst LD, "Chance and necessity in the evolution of minimal metabolic networks", Nature, 440:667–670 (2006). [PMID: 16572170]CrossRefGoogle Scholar
  5. Parales RE and Ditty JL, "Laboratory evolution of catabolic enzymes and pathways", Curr Opin Biotechn, 16:315–325 (2005).[PMID: 15961033]Google Scholar
  6. Paegel BM and Joyce GF, "Darwinian evolution on a chip", PLoS Biol 6: e85 (2008). [PMID: 18399721]CrossRefGoogle Scholar
  7. Pósfai G, et al., "Emergent properties of reduced-genome Escherichia coli", Science, 312: 1044–1046 (2006). [PMID: 16645050]CrossRefGoogle Scholar
  8. Seelig B and Szostak JW, "Selection and evolution of enzymes from a partially randomized noncatalytic scaffold", Nature, 448:828–833 (2007). [PMID: 17700701]CrossRefGoogle Scholar
  9. Toh H, Weiss, BL, Perkin, SAH, Yamashita A, Oshima K, Hattori M, and Aksoy S, "Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host", Genome Res, 16:149–156. (2006). [PMID: 16365377]CrossRefGoogle Scholar
  10. Yuan L, Kurek I, English J, and Keenan R, "Laboratory-directed protein evolution", Microbiol Mol Biol Rev, 69:373–392 (2005). [PMID: 16148303]CrossRefGoogle Scholar

Copyright information

© Springer-Verlag Berlin Heidelberg 2009

Authors and Affiliations

  • David W. Ussery
    • 1
  • Trudy M. Wassenaar
    • 2
  • Stefano Borini
    • 3
  1. 1.Department of Systems BiologyThe Technical University of DenmarkLyngbyDenmark
  2. 2.Molecular Microbiology and Genomics ConsultantsZotzenheimGermany
  3. 3.Laboratory of Physical Chemistry Swiss Federal Institute of Technology (ETH)ZurichSwitzerland

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