Abstract
The hydrogen bond formation leads to numerous structural changes in interacting sub-systems. These changes are a consequence of a redistribution of electron charge density being a result of complexation. This is important that similar transformations are observed for other Lewis acid–Lewis base interactions. In general, for such interactions, including the hydrogen bond, an electron charge shift is observed from the Lewis base unit to the Lewis acid. This leads to further processes such as a change of polarizations of bonds, rehybridization of atoms, and numerous others. The transformations being the result of complexation are reflected in changes of geometrical, energetic and topological parameters. The results of ab initio calculations as well as of the Quantum Theory of ‘Atoms in Molecules’ (QTAIM) and Natural Bond Orbitals (NBO) approaches are presented here for selected types of Lewis acid–Lewis base interactions. Experimental X-ray and neutron diffraction measurements’ results on organic crystal structures are analyzed to support the ideas presented.
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References
Hobza P, Müller-Dethlefs K (2010) Non-covalent interactions, theory and experiment. Royal Society of Chemistry, Thomas Graham House, Science Park, Milton Road, Cambridge
Pauling L (1960) The nature of the chemical bond, 3rd edn. Cornell University Press, Ithaca, New York, p 8
International Union of Pure and Applied Chemistry, Compendium of Chemical Terminology, Gold Book, Version 2.3.3 2014-02-24, p 344, http://goldbook.iupac.org/C01384.html
Warshel A (1991) Computer modeling of chemical reactions in enzymes and solution. Wiley, New York
Perrin CL, Nielson JB (1997) Annu Rev Phys Chem 48:511
Nadal-Ferret M, Gelabert R, Moreno M, Lluch JM (2014) J Am Chem Soc 136:3542
Sobczyk L, Grabowski SJ, Krygowski TM (2005) Chem Rev 105:3513
Grabowski SJ (2011) Chem Rev 11:2597
Morokuma K, Kitaura K (1980) Molecular interactions. In: Ratajczak H, Orville-Thomas WJ (eds) vol 1. Wiley, New York, pp 21–66
Sokalski WA, Roszak S, Pecul K (1988) Chem Phys Lett 153:153
Sokalski WA, Roszak S (1991) J Mol Struct (THEOCHEM) 234:387
Coulson CA (1952) Valence. Oxford University Press, Oxford
Pimentel GC, McClellan AL (1960) The hydrogen bond. W.H.Freeman and Company, San Francisco and London
Lewis GN (1923) Valence and the structure of atoms and molecules. Chemical Catalog, New York
Sundberg MR, Uggla R, Viñas C, Teixidor F, Paavola S, Kivekäs R (2007) Inorg Chem Commun 10:713
Tschirschwitz S, Lönnecke P, Hey-Hawkins E (2007) Dalton Trans 1377
Murray JS, Lane P, Politzer P (2007) Int J Quant Chem 107:2286
Bauer S, Tschirschwitz S, Lönnecke P, Franck R, Kirchner B, Clark ML, Hey-Hawkins E (2009) Eur J Inorg Chem:2776
Del Bene JE, Alkorta I, Sánchez-Sanz G, Elguero J (2011) J Phys Chem A 115:13724
Scheiner S (2011) Chem Phys Lett 514:32
Guan L, Mo Y (2014) J Phys Chem A 118:8911
Rozas I, Alkorta I, Elguero J (1997) J Phys Chem A 101:4236
Grabowski SJ, Sokalski WA, Leszczynski J (2006) Chem Phys Lett 422:334
Sanz P, Mó P, Yañez M (2002) J Phys Chem A 106:4661
Wang W, Ji B, Zhang Y (2009) J Phys Chem A 113:8132
Alikhani E, Fuster F, Madebene B, Grabowski SJ (2014) Phys Chem Chem Phys 16:2430
Lipkowski P, Grabowski SJ, Leszczynski J (2006) J Phys Chem A 110:10296
Politzer P, Murray JS (2013) ChemPhysChem 14:278
Jeffrey GA, Saenger W (1991) Hydrogen bonding in biological structures. Springer, Berlin
Jeffrey GA (1997) An introduction to hydrogen bonding. Oxford University Press, New York
Desiraju GR, Steiner T (1999) The weak hydrogen bond in structural chemistry and biology. Oxford University Press Inc., New York
Scheiner S (1997) Hydrogen bonding: a theoretical perspective. Oxford University Press, New York
Grabowski SJ (ed) (2006) Hydrogen bonding—New insights, vol 3: Challenges and advances in computational chemistry and physics, Leszczynski J (ed). Springer
Nishio M, Hirota M, Umezawa Y (1998) The CH/π interaction, evidence, nature, and consequences. Wiley-VCH, New York
Szymczak JJ, Grabowski SJ, Roszak S, Leszczynski J (2004) Chem Phys Lett 393:81
Grabowski SJ, Sokalski WA, Leszczynski J (2006) Chem Phys Lett 432:33
Grabowski SJ (2007) J Phys Chem A 111:3387
Grabowski SJ (2013) J Phys Org Chem 26:452
Jucks KW, Miller RE (1987) J Chem Phys 87:5629
Moore DT, Miller RE (2003) J Chem Phys 118:9629
Moore DT, Miller RE (2003) J Phys Chem A 107:10805
Moore DT, Miller RE (2004) J Phys Chem A 108:1930
Bieske EJ, Nizkorodov SA, Bennett FR, Maier JP (1995) J Chem Phys 102:5152
Custelcean R, Jackson JE (2001) Chem Rev 101:1963
Murray JS, Lane P, Politzer P (2009) J Mol Model 15:723
Politzer P, Murray JS, Clark T (2010) Phys Chem Chem Phys 12:7748
Politzer P, Murray JS, Clark T (2013) Phys Chem Chem Phys 15:11178
Bundhun A, Ramasami P, Murray JS, Politzer P (2013) J Mol Model 19:2739
Mani D, Arunan E (2013) Phys Chem Chem Phys 15:14377
Grabowski SJ (2014) Phys Chem Chem Phys 16:1824
Bauzá A, Mooibroek TJ, Frontera A (2013) Angew Chem Int Ed 52:12317
McDowell SAC (2014) Chem Phys Lett 598:1
Li Q, Guo X, Yang X, Li W, Cheng J, Li H-B (2014) Phys Chem Chem Phys 16:11617
Metrangolo P, Resnati G (2001) Chem Eur J 7:2511
Cavallo G, Metrangolo P, Pilati T, Resnati G, Sansotera M, Terraneo G (2010) Chem Soc Rev 39:3772
Wang L, Gao J, Bi F, Song B, Liu C (2014) J Phys Chem A 118:9140
Metrangolo P, Resnati G (eds) (2008) Halogen bonding, fundamentals and applications. Springer, Berlin
Grabowski SJ (2014) Chem Phys Lett 605–606:131
Wong R, Allen FH, Willett P (2010) J Appl Crystallogr 43:811
Formigué M, Batail P (2004) Chem Rev 104:5379
Murray JS, Riley KE, Politzer P, Clark T (2010) Aust J Chem 63:1598
Lipkowski P, Grabowski SJ (2014) Chem Phys Lett 591:113
Clark T (2013) WIREs Comput Mol Sci 3:13
Tsirelson VG, Ozerov RP (1996) Electron density and bonding in crystals. Institute of Physics, Bristol
Coppens P (1997) X-Ray charge densities and chemical bonding. Oxford University Press, IUCr
http://www.ccdc.cam.ac.uk/Lists/ResourceFileList/2014_stats_entries.pdf
Grabowski SJ (2014) ChemPhysChem 15:2985
Weinhold F, Landis C (2005) Valency and bonding, a natural bond orbital Donor–Acceptor perspective. Cambridge University Press, Cambridge
Yañez M, Sanz P, Mó O, Alkorta I, Elguero J (2009) J Chem Theor Comput 5:2763
Martín-Sómer A, Lamsabhi AM, Mó O, Yañez M (2012) Comput Theor Chem 998:74
Mó O, Yañez M, Alkorta I, Elguero J (2012) J Chem Theor Comput 8:2293
Albrecht L, Boyd RJ, Mó O, Yañez M (2012) Phys Chem Chem Phys 14:14540
Kollman PA, Liebman JF, Allen LC (1970) J Am Chem Soc 92:1142
Ammal SSC, Venuvanalingam P (1998) J Chem Soc, Faraday Trans 94:2669
Ammal SSC, Venuvanalingam P (2000) J Phys Chem A 104:10859
Arunan E, Desiraju GR, Klein RA, Sadlej J, Scheiner S, Alkorta I, Clary DC, Crabtree RH, Dannenberg JJ, Hobza P, Kjaergaard HG, Legon AC, Mennucci B, Nesbitt DJ (2011) Pure Appl Chem 83:1637
Taylor R, Kennard O (1982) J Am Chem Soc 104:5063
Suttor DJ (1963) J Chem Soc 1105
Desiraju GR (2002) Acc Chem Res 35:565
Pinchas S (1955) Anal Chem 27:2
Schneider WG, Bernstein HJ (1956) Trans Faraday Soc 52:13
Trudeau G, Dumas JM, Dupuis P, Guerin M, Sandorfy C (1980) Topics of Curr Chem 93:91
Hobza P, Havlas Z (2000) Chem Rev 100:4253
Alabugin IV, Manoharan M, Peabody S, Weinhold F (2003) J Am Chem Soc 125:5973
Reed AE, Curtiss LA, Weinhold F (1988) Chem Rev 88:899
Weinhold F, Klein R (2012) Mol Phys 110:565
Alkorta I, Elguero J, Grabowski SJ (2008) J Phys Chem A 112:2721
Richardson TB, de Gala S, Crabtree RH (1995) J Am Chem Soc 117:12875
Wessel J, Lee JC Jr, Peris E, Yap GPA, Fortin JB, Ricci JS, Sini G, Albinati A, Koetzle TF, Eisenstein O, Rheingold AL, Crabtree RH (1995) Angew Chem Int Ed Engl 34:2507
Crabtree RH, Siegbahn PEM, Eisenstein O, Rheingold AL, Koetzle TFA (1996) Acc Chem Res 29:348
Platts JA, Howard ST, Bracke BRF (1996) J Am Chem Soc 118:2726
Bader RFW (1985) Acc Chem Res 18:9
Bader RFW (1990) Atoms in molecules, a quantum theory. Oxford University Press, Oxford
Koch U, Popelier PLA (1995) J Phys Chem 99:9747
Grabowski SJ (2013) Phys Chem Chem Phys 15:7249
Glendening ED (2005) J Phys Chem A 109:11936
Bent HA (1961) Chem Rev 61:275
Grabowski SJ (2011) J Phys Chem A 115:12789
Grabowski SJ (2011) J Phys Chem A 115:12340
Grabowski SJ (2012) J Phys Chem A 116:1838
Grabowski SJ (2013) J Mol Model 19:4713
Alkorta I, Blanco F, Deyà PM, Elguero J, Estarellas C, Frontera A, Quiñonero D (2010) Theor Chem Acc 126:1
Kar T, Scheiner S (2004) J Phys Chem A 108:9161
Hunt SW, Higgins KJ, Craddock MB, Brauer CS, Leopold KR (2003) J Am Chem Soc 125:13850
Grabowski SJ (2013) Theor Chem Acc 132:1347
Acknowledgments
Financial support comes from Eusko Jaurlaritza (IT588-13) and the Spanish Office for Scientific Research (CTQ2012-38496-C05-04). Technical and human support provided by Informatikako Zerbitzu Orokora—Servicio General de Informática de la Universidad del País Vasco (SGI/IZO-SGIker UPV/EHU), Ministerio de Ciencia e Innovación (MICINN), Gobierno Vasco Eusko Jaurlanitza (GV/EJ), European Social Fund (ESF) is gratefully acknowledged.
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Grabowski, S.J. (2016). Hydrogen Bond and Other Lewis Acid–Lewis Base Interactions—Mechanisms of Formation. In: Leszczynski, J., Shukla, M. (eds) Practical Aspects of Computational Chemistry IV. Springer, Boston, MA. https://doi.org/10.1007/978-1-4899-7699-4_9
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