Skip to main content

Part of the book series: NATO Advanced Science Institutes Series ((ASIB,volume 92))

Abstract

A method is described to include constraints such as bond lengths and bond angles into molecular dynamics simulations, while retaining cartesian coordinates. The effects of constraints on physical behaviour and computational efficiency are evaluated. A Fortran subroutine (SHAKE) is appended.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. J.P. Ryckaert, G. Ciccotti and H.J.C. Berendsen, J. Comput.Phys. 23 (1977) 327.

    Article  ADS  Google Scholar 

  2. H. Goldstein, Classical Mechanics, Addison-Wesley, Reading, Mass., 1950.

    Google Scholar 

  3. J. Wittenburg, Dynamics of Systems of Rigid Bodies, Teubner, Stuttgart 1977.

    Book  MATH  Google Scholar 

  4. M.R. Pear and J.H. Weiner, J.Chem.Phys. 71 (1979) 212.

    Article  ADS  Google Scholar 

  5. M. Fixman, J.Chem.Phys. 69 (1978) 1527.

    Article  ADS  Google Scholar 

  6. L. Verlet, Phys.Rev. 159 (1967) 98.

    Article  ADS  Google Scholar 

  7. J.P. Ryckaert and A. Bellemans, Faraday Discussions Chem.Soc. 66 (1978) 95.

    Article  Google Scholar 

  8. W.F. van Gunsteren, H.J.C. Berendsen and J.A.C. Rullmann, Faraday Discussions Chem. Soc. 66 (1978) 58.

    Google Scholar 

  9. W.F. van Gunsteren and H.J.C. Berendsen, Mol.Phys. 34 (1977) 1311.

    Article  ADS  Google Scholar 

  10. W.F. van Gunsteren and M. Karplus, “The effect of constraints on the dynamics of macromolecules”, to be published.

    Google Scholar 

  11. W.F. van Gunsteren and M. Karplus, J.Comput.Chem. 1 (1980) 266.

    Article  Google Scholar 

  12. J.A. McCammon, B.R. Gelin and M. Karplus, Nature 267 (1977) 585.

    Article  ADS  Google Scholar 

  13. N. Go and H.A. Scheraga, Macromolecules 9 (1976) 535.

    Article  ADS  Google Scholar 

  14. M. Fixman, Proc.Natl.Acad.Sci. USA 71 (1974) 3050.

    Article  ADS  Google Scholar 

  15. E. Helfand, J.Chem.Phys. 71 (1979) 5000.

    Article  ADS  Google Scholar 

  16. M. Gottlieb and R.B. Bird, J.Chem.Phys. 65 (1976) 2467.

    Article  ADS  Google Scholar 

  17. D. Chandler and B.J. Berne, J.Chem.Phys. 71 (1979) 5386.

    Article  MathSciNet  ADS  Google Scholar 

  18. W.F. van Gunsteren, Mol.Phys. 40 (1980) 1015.

    Article  ADS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1983 Plenum Press, New York

About this chapter

Cite this chapter

Berendsen, H.J.C., van Gunsteren, W.F. (1983). Molecular Dynamics with Constraints. In: Perram, J.W. (eds) The Physics of Superionic Conductors and Electrode Materials. NATO Advanced Science Institutes Series, vol 92. Springer, Boston, MA. https://doi.org/10.1007/978-1-4684-4490-2_13

Download citation

  • DOI: https://doi.org/10.1007/978-1-4684-4490-2_13

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4684-4492-6

  • Online ISBN: 978-1-4684-4490-2

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics