Skip to main content

Suppression

  • Chapter

Part of the book series: Biological Regulation and Development ((BRD,volume 1))

Abstract

Suppression is the genetic term used to describe the effect of a general class of secondary mutations that restore a wild or pseudo-wild type phenotype to a mutant organism in which the primary mutation is still maintained. The isolation of a suppressor serves to identify a compensating mutation in the second of a pair of genes which may encode macromolecules interacting at some point in viral or cell metabolism. Since the molecular mechanism by which a wild type phenotype appears usually is not prescribed by the genetic selection imposed, one would predict that biochemical alterations of many different types could correct a given deficiency. In fact, evidence accumulated since the first report of suppression in 1927 (Bonnier, 1927) clearly shows that correction mechanisms operate both during the transcription and translation steps of gene expression, and also at the level of the final gene products. The many types of genetic suppression were enumerated several years ago in the comprehensive article of Hartman and Roth (1973). The experimental evidence which has identified the molecular basis for nonsense suppression (Garen, 1968; Körner et al, 1978), missense suppression (Hill, 1975), frameshift suppression (Roth, 1974), and ribosomal suppression (Gorini, 1970, 1974) has been discussed. Hawthorne and Leupold (1974) have recently summarized our knowledge of genetic suppression in yeast. These remain excellent discussions of the basic principles for the class of suppressor mutations, termed informational suppressors, that affects the macromolecular components of the transcription and translation processes.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Adetugbo, K., Milstein, C., and Secher, D. S., 1977, Molecular analysis of spontaneous somatic mutants, Nature 265: 299–304.

    Article  PubMed  CAS  Google Scholar 

  • Adhya, S., Gottesman, M., and de Crombrugghe, B., 1974, Release of polarity in Escherichia coli by gene N of phage X: Termination and antitermination of transcription, Proc. Natl. Acad. Sci. U.S.A., 71: 2534–2538.

    Article  PubMed  CAS  Google Scholar 

  • Adhya, S., Gottesman, M., de Crombrugghe, B., and Court, D., 1976, Transcription termination regulates gene expression, in: RNA Polymerase ( R. Losick and M. Chamberlin, eds.), pp. 719–730, Cold Spring Harbor Lab., Cold Spring Harbor, New York.

    Google Scholar 

  • Agris, P., and Soll, D., 1977, The modified nucleosides in transfer RNA, in: Nucleic Acid-Protein Recognition ( H. Vogel, ed.), pp. 321–344, Academic Press, New York.

    Google Scholar 

  • Air, G. M., Sanger, F., and Coulson, A. R., 1976, Nucleotide and amino acid sequences of gene G of 4,X174, J. Mol. Biol. 108: 519–533.

    Article  PubMed  CAS  Google Scholar 

  • Akaboshi, E., Inouye, M., and Tsugita, A., 1976, Effect of neighboring nucleotide sequences on suppression efficiency in amber mutants of T4 phage lysozyme, Mol. Gen. Genet. 149: 1–4.

    Article  PubMed  CAS  Google Scholar 

  • Altman, S., 1976, A modified uridine in the anticodon of E. coli tRNAI Yr sue, Nucleic Acids Res. 3: 441–448.

    PubMed  CAS  Google Scholar 

  • Altman, S., 1978, tRNA biosynthesis, in: Transfer RNA (S. Altman, ed.), pp. 48–77, MIT Press, Cambridge, Massachusetts.

    Google Scholar 

  • Altman, S., and Smith, J. D., 1971, Tyrosine tRNA precursor molecule polynucleotide sequence, Nature New Biol. 233: 35–39.

    PubMed  CAS  Google Scholar 

  • Altman, S., Brenner, S., and Smith, J. D., 1971, Identification of an ochre-suppressing anticodon, J. Mol. Biol. 56: 195–197.

    Article  PubMed  CAS  Google Scholar 

  • Atkins, J. F., and Ryce, S., 1974, UGA and non-triplet suppressor reading of the genetic code, Nature 249: 527–530.

    Article  PubMed  CAS  Google Scholar 

  • Baan, R. A., Duijfjes, J. J., van Leerdam, E., van Knippenberg, P. H., and Bosch, L., 1976, Specific in situ cleavage of 16S ribosomal RNA of Escherichia coli interferes with the function of initiation factor IF-1, Proc. Natl. Acad. Sci. U.S.A. 73: 702–706.

    Article  PubMed  CAS  Google Scholar 

  • Bachmann, B. J., Low, K. B., and Taylor, A. L., 1976, Recalibrated linkage map of Escherichia coli K-12, Bacterial. Rev. 40: 116–167.

    CAS  Google Scholar 

  • Barrell, B. G., Air, G. M., and Hutchison, C. A., III, 1976, Overlapping genes in bacteriophage 4,X174, Nature 264: 34–40.

    Article  PubMed  CAS  Google Scholar 

  • Bartz, J., 1972, N6-(02-Isopentenyl)adenosine: Biosynthesis in vitro in transfer RNA by an enzyme purified from Escherichia coli, Biochimie 54: 31–39.

    Article  PubMed  CAS  Google Scholar 

  • Beaudet, A. L., and Caskey, C. T., 1970, Release factor translation of RNA phage terminator codons, Nature 227: 38–40.

    Article  PubMed  CAS  Google Scholar 

  • Beaudet, A. L., and Caskey, C. T., 1972, Polypeptide chain termination, in: The Mechanism of Protein Synthesis and Its Regulation ( L. Bosch, ed.), pp. 133–172, American Elsevier, New York.

    Google Scholar 

  • Beckwith, J., 1963, Restoration of operon activity by suppressors, Biochim. Biophys. Acta 76: 162–164.

    Article  PubMed  CAS  Google Scholar 

  • Bell, J., and Maclntyre, R., 1973, Characterization of acid phosphatase-1 null activity mutants of Drosophila melanogaster, Biochem. Genet. 10: 39–55.

    Article  PubMed  CAS  Google Scholar 

  • Benzer, S., 1966, Adventures in the rII region, in: Phage and the Origins of Molecular Biology U. Cairns, G. S. Stent, and J. D. Watson, eds.), pp. 157–165, Cold Spring Harbor Lab., Cold Spring Harbor, New York.

    Google Scholar 

  • Benzer, S., and Champe, S. P., 1962, A change from nonsense to sense in the genetic code, Proc. Natl. Acad. Sci. U.S.A. 48: 1114–1121.

    Article  PubMed  CAS  Google Scholar 

  • Beyreuther, K., Adler, K., Geisler, N., and Klemm, A., 1973, The amino acid sequence of lac repressor, Proc. Natl. Acad. Sci. U.S.A. 70: 3576–3580.

    Article  PubMed  CAS  Google Scholar 

  • Bigelis, R., Keesey, J., and Fink, G. R., 1977, The his-4 fungal gene cluster is not polycistronic, in: Eukaryotic Genetic Systems, (G. Wilcox, ed.), ICN-UCLA Symp. Vol. VIII, pp. 179–187, Academic Press, New York.

    Google Scholar 

  • Biswas, D. K., and Gorini, L., 1972, Restriction, de-restriction and mistranslation in missense suppression. Ribosomal discrimination of transfer RNA’s, J. Mol. Biol. 64: 119–134.

    Article  PubMed  CAS  Google Scholar 

  • Bonnier, G., 1927, Note on the so-called vermilion-duplication, Hereditas 7: 229–232.

    Article  Google Scholar 

  • Bothwell, A. L. M., Stark, S. C., and Altman, S., 1976, Ribonuclease P substrate specificity: Cleavage of a bacteriophage 080-induced RNA, Proc. Natl. Acad. Sci. U.S.A. 73: 1912–1916.

    Article  PubMed  CAS  Google Scholar 

  • Bourgeois, S., Cohn, M., and Orgel, L. E., 1965, Suppression of and complementation among mutants of the regulatory gene of the lactose operon of Escherichia coli, J. Mol. Biol. 14: 300–302.

    Article  PubMed  CAS  Google Scholar 

  • Brandriss, M. C., Stewart, J. W., Sherman, F., and Botstein, D., 1976, Substitution of serine caused by a recessive lethal suppressor in yeast, J. Mol. Biol. 102: 467–476.

    Article  PubMed  CAS  Google Scholar 

  • Breathnach, R., Mandel, J. L., and Chambon, P., 1977, Ovalbumin gene is split in chicken DNA, Nature 270: 314–319.

    Article  PubMed  CAS  Google Scholar 

  • Breckenridge, L., and Gorini, L., 1970, Genetic analysis of streptomycin resistance in Escherichia coli, Genetics 65: 9–25.

    PubMed  CAS  Google Scholar 

  • Brenner, D. J., Fournier, M. J., and Doctor, B. P., 1970, Isolation and partial characterization of the transfer ribonucleic acid cistrons from Escherichia coli, Nature 227: 448–451.

    Article  PubMed  CAS  Google Scholar 

  • Brenner, S., and Beckwith, J. R., 1965, Ochre mutants, a new class of suppressible nonsense mutants, J. Mol. Biol. 13: 629–637.

    Article  Google Scholar 

  • Bretscher, M. S., 1968, Polypeptide chain termination: An active process, J. Mol. Biol. 34: 131–136.

    Article  PubMed  CAS  Google Scholar 

  • Brot, N., Tate, W. P., Caskey, C. T., and Weissbach, H., 1974, The requirement for ribosomal proteins L7 and L12 in peptide chain termination, Proc. Natl. Acad. Sci. U.S.A. 71: 89–92.

    Article  PubMed  CAS  Google Scholar 

  • Brunel, F., and Davison, J., 1975, Bacterial mutants able to partly suppress the effect of N mutations in bacteriophage X, Mol. Gen. Genet. 136: 167–180.

    Article  PubMed  CAS  Google Scholar 

  • Buckel, P., Piepersberg, W., and Böck, A., 1976, Suppression of temperature-sensitive aminoacyl-tRNA synthetase mutations by ribosomal mutations: A possible mechanism, Mol. Gen. Genet. 149: 5161.

    Google Scholar 

  • Buckingham, R. H., 1976, Anticodon conformation and accessibility in wild type and suppressor tryptophan tRNA from E. coli, Nucleic Acids Res. 3: 965–975.

    PubMed  CAS  Google Scholar 

  • Capecchi, M. R., and Klein, H. A., 1969, Characterization of three proteins involved in polypeptide chain termination, Cold Spring Harbor Symp. Quant. Biol. 34: 469–477.

    Article  PubMed  CAS  Google Scholar 

  • Capecchi, M. R., Hughes, S. H., and Wahl, G. M., 1975, Yeast super-suppressors are altered tRNAs capable of translating a nonsense codon in vitro, Cell 6: 269–277.

    Article  PubMed  CAS  Google Scholar 

  • Capecchi, M. R., von der Haar, R. A., Capecchi, N. E., and Sveda, M. M., 1977, The isolation of a suppressible nonsense mutant in mammalian cells, Cell 12: 371–381.

    Article  PubMed  CAS  Google Scholar 

  • Carbon, J., and Fleck, E. W., 1974, Genetic alteration of structure and function in glycine transfer RNA of Escherichia coli: Mechanism of suppression of the tryptophan synthetase A78, J. Mol. Biol. 85: 371–391.

    Article  PubMed  CAS  Google Scholar 

  • Caskey, C. T., and Beaudet, A. L., 1971, Proceedings of the Symposium on Molecular Mechanisms of Antibiotic Action on Protein Biosynthesis and Membranes (E. Munoz, F. Garvia-Fernandiz, and D. Vazquez, eds.), pp. 326–336, Granada, Spain.

    Google Scholar 

  • Caskey, C. T., Bosch, L., and Konecki, D. S., 1977, Release factor binding to ribosome requires an intact 16S rRNA 3’ terminus, J. Biol. Chem. 252: 4435–4437.

    PubMed  CAS  Google Scholar 

  • Celis, J. E., Hooper, M. L., and Smith, J. D., 1973, Amino acid acceptor stem of E. coli suppressor tRNATY` is a site of synthetase recognition, Nature New Biol. 244: 261–264.

    PubMed  CAS  Google Scholar 

  • Celis, J. E., Coulondre, C., and Miller, J. H., 1976, Suppressor su+7 inserts tryptophan in addition to glutamine, J. Mol. Biol. 104: 729–734.

    Article  PubMed  CAS  Google Scholar 

  • Chakrabarti, S. L., and Gorini, L., 1975, A link between streptomycin and rifampicin mutation, Proc. Natl. Acad. Sci. U.S.A. 72: 2084–2087.

    Article  PubMed  CAS  Google Scholar 

  • Clegg, J. B., Weatherall, D. J., Contopolou-Griva, I., Caroutsos, K., Poungouras, P., and Tsevrenis, H., 1974, Haemoglobin Icaria, a new chain-termination mutant which causes a-thalassaemia, Nature 251: 245–247.

    Article  PubMed  CAS  Google Scholar 

  • Colby, D. S., Schedl, P., and Guthrie, C., 1976, A functional requirement for modification of the wobble nucleotide in the anticodon of a T2 suppressor tRNA, Cell 9: 449–463.

    Article  PubMed  CAS  Google Scholar 

  • Comer, M. M., 1977, Correlation between genetic and nucleotide distances in a bacteriophage T4 transfer RNA gene, J. Mol. Biol. 113: 267–271.

    Article  PubMed  CAS  Google Scholar 

  • Corner, M. M., Guthrie, C., and McClain, W. H., 1974, An ochre suppressor of bacteriophage T4 that is associated with a transfer RNA, J. Mol. Biol. 90: 665–676.

    Article  Google Scholar 

  • Corner, M. M., Foss, K., and McClain, W. H., 1975, A mutation of the wobble nucleotide of a bacteriophage T4 transfer RNA, J. Mol. Biol. 99: 283–293.

    Article  Google Scholar 

  • Contreras, R., Ysebaert, M., Min Jou, W., and Fiers, W., 1973, Bacteriophage MS2 RNA: Nucleotide sequence of the end of the A protein gene and the intercistronic region, Nature New Biol. 241: 99–102.

    PubMed  CAS  Google Scholar 

  • Coulondre, C., and Miller, J. H., 1977a, Genetic studies of the lac repressor: III. Additional correlation of mutational sites with specific amino acid residues, J. Mol. Biol. 117: 525–575.

    Article  PubMed  CAS  Google Scholar 

  • Coulondre, C., and Miller, J. H., 1977b, Genetic studies of the lac repressor: IV. Mutagenic specificity in the lad gene of E. coli, J. Mol. Biol. 117: 577–606.

    Article  PubMed  CAS  Google Scholar 

  • Cox, B. S., 1965, Cytoplasmic suppressor of super-suppressor in yeast, Heredity 20: 505–521.

    Article  Google Scholar 

  • Crick, F. H. C., 1966, Codon-anticodon pairing: The wobble hypothesis, J. Mol. Biol. 19: 548–555.

    Article  PubMed  CAS  Google Scholar 

  • Crick, F. H. C., Barnett, L., Brenner, S., and Watts-Tobin, R. J., 1961, Triplet nature of the code, Nature 192: 1227–1232.

    Article  PubMed  CAS  Google Scholar 

  • Culbertson, M. R., Charnes, L., Johnson, M. T., and Fink, G. R., 1977, Frameshifts and frameshift suppressors in Saccharomyces cerevisiae, Genetics 86: 745–764.

    PubMed  CAS  Google Scholar 

  • Dabbs, E. R., and Wittmann, H. G., 1976, A strain of Escherichia coli which gives rise to mutations in a large number of ribosomal proteins, Mol. Gen. Genet. 149: 303–309.

    Article  PubMed  CAS  Google Scholar 

  • Dalgarno, L., and Shine, J., 1973, Conserved terminal sequence in 18S rRNA may represent terminator anticodons, Nature New Biol. 245: 261–262.

    Article  PubMed  CAS  Google Scholar 

  • Das, A., Court, D., and Adhya, S., 1976, Isolation and characterization of conditional lethal mutants of Escherichia coli defective in transcription termination factor rho, Proc. Natl. Acad. Sci. U.S.A. 73: 1959–1963.

    Article  PubMed  CAS  Google Scholar 

  • Dickson, R. C., Abelson, J., Barnes, W. M., and Reznikoff, W. S., 1975, Genetic regulation: The lac control region, Science 187: 27–35.

    Article  PubMed  CAS  Google Scholar 

  • Donis-Keller, H., Maxam, A. M., and Gilbert, W., 1977, Mapping adenines, guanines, and pyrimidines in RNA. Nucleic Acids Res. 4: 2527–2538.

    Article  PubMed  CAS  Google Scholar 

  • Dudock, B., Lesiewicz, J., Greenberg, R., and Wu, E., 1978, A new class of modification reactions in E. coli and rabbit liver mitochondrial tRNA: The formation of methyl esters (submitted for publication).

    Google Scholar 

  • Edelmann, P., and Gallant, J., 1977, Mistranslation in E. coli, Cell 10: 131–137.

    Article  PubMed  CAS  Google Scholar 

  • Efstratiadis, A., Kafatos, F. C., and Maniatis, T., 1977, The primary structure of rabbit ß-globin mRNA as determined from cloned DNA, Cell 10: 571–585.

    Article  PubMed  CAS  Google Scholar 

  • Elseviers, D., and Gorini, L., 1975, Direct selection of mutants restricting efficiency of suppression and misreading levels in E. coli B, Mol. Gen. Genet. 137: 277–287.

    Article  PubMed  CAS  Google Scholar 

  • Engelberg-Kulka, H., Dekel, L., and Israeli-Reches, M., 1977, Streptomycin-resistant Escherichia coli mutant temperature sensitive for the production of QB-infective particles, J. Virol. 21: 1–6.

    PubMed  CAS  Google Scholar 

  • Farabaugh, P. J., 1978, Sequence of the lad gene, Nature 274: 765–769.

    Article  PubMed  CAS  Google Scholar 

  • Feinstein, S. I., and Altman, S., 1977, Coding properties of an ochre-suppressing derivative of Escherichia coli tRNA; Y`, J. Mol. Biol. 112: 453–470.

    Article  PubMed  CAS  Google Scholar 

  • Feinstein, S. I., and Altman, S., 1978, Context effects on nonsense codon suppression in Escherichia coli, Genetics 88: 201–219.

    PubMed  CAS  Google Scholar 

  • Fiddes, J. C., 1976, Nucleotide sequence of the intercistronic region between genes G and F in bacteriophage 4X174 DNA, J. Mol. Biol. 107: 1–24.

    Article  PubMed  CAS  Google Scholar 

  • Fiers, W., Contreras, R., Duerinck, F., Haegeman, G., Iserentant, D., Merregaert, J., Min Jou, W., Molemans, F., Raeymaekers, A., Van den Berghe, A., Volckaert, G., and Ysebaert, M., 1976, Complete nucleotide sequence of bacteriophage MS2 RNA: Primary and secondary structure of the replicase gene, Nature 260: 500–507.

    Article  PubMed  CAS  Google Scholar 

  • Files, J. G., Weber, K., and Miller, J. H., 1974, Translational reinitiation: Reinitiation of lac repressor fragments at the three internal sites early in the lac i gene of Escherichia coli, Proc. Natl. Acad. Sci. U.S.A. 71: 667–670.

    Article  PubMed  CAS  Google Scholar 

  • Fittler, F., Kline, L. K., and Hall, R. H., 1968, Biosynthesis of N6-(12-isopentenyl)adenosine. The precursor relationship of acetate and mevalonate to the A2-isopentenyl group of the transfer ribonucleic acid of microorganisms, Biochemistry 7: 940–944.

    Article  PubMed  CAS  Google Scholar 

  • Fluck, M. M., Salser, W., and Epstein, R. H., 1977, The influence of the reading context upon the suppression of nonsense codons, Mol. Gen. Genet. 151: 137–149.

    Article  PubMed  CAS  Google Scholar 

  • Fox, I. L., and Ganoza, M. C., 1968, Chain termination in vitro. Studies on the specificity of amber and ochre triplets, Biochem. Biophys. Res. Commun. 32: 1064–1070.

    Article  PubMed  CAS  Google Scholar 

  • Franklin, N. C., 1974, Altered reading of genetic signals fused to the N operon of bacteriophage X: Genetic evidence for modification of polymerase by the protein product of the N gene, J. Mol. Biol. 89: 33–48.

    Article  PubMed  CAS  Google Scholar 

  • Franklin, N. C., and Yanofsky, C., 1976, The N protein of X: Evidence bearing on transcription termination, polarity and the alteration of E. cou RNA polymerase, in: RNA Polymerase ( R. Losick and M. Chamberlin, eds.), pp. 693–706, Cold Spring Harbor Lab., Cold Spring Harbor, New York.

    Google Scholar 

  • Freymeyer, D. K., II, Shank, P. R., Edgell, M. H., Hutchison, C. A., III, and Vanaman, T. C., 1977, Amino acid sequence of the small core protein from bacteriophage ¢X174, Biochemistry 16: 45504556.

    Google Scholar 

  • Friedman, D. I., and Yarmolinsky, M., 1972, Prevention of the lethality of induced X prophage by an isogenic X plasmid, Virology 50: 472–481.

    Article  PubMed  CAS  Google Scholar 

  • Galas, D. J., and Branscomb, E. W., 1976, Ribosome slowed by mutation to streptomycin resistance, Nature 262: 617–619.

    Article  PubMed  CAS  Google Scholar 

  • Galluppi, G., Lowery, C., and Richardson, J. P., 1976, Nucleoside triphosphate requirement for termination of RNA synthesis by rho factor, in: RNA Polymerase ( R. Losick and M. Chamberlin, eds.), pp. 657–665, Cold Spring Harbor Lab., Cold Spring Harbor, New York.

    Google Scholar 

  • Ganoza, M. C., and Tomkins, J. K. N., 1970, Polypeptide chain termination in vitro: Competition for nonsense codons between a purified release factor and suppressor tRNA, Biochem. Biophys. Res. Commun. 40: 1455–1463.

    Article  PubMed  CAS  Google Scholar 

  • Garen, A., 1968, Sense and nonsense in the genetic code, Science 160: 149–159.

    Article  PubMed  CAS  Google Scholar 

  • Gefter, M. L., and Russell, R. L., 1969, Role of modifications in tyrosine transfer RNA: A modified base affecting ribosome binding, J. Mol. Biol. 39: 145–157.

    Article  PubMed  CAS  Google Scholar 

  • Georgopoulos, C. P., 1971, Bacterial mutants in which the gene N function of bacteriophage lambda is blocked have an altered RNA polymerase, Proc. Natl. Acad. Sci. U.S.A. 68: 2977–2981.

    Article  PubMed  CAS  Google Scholar 

  • Gesteland, R. F., Wolfner, M., Grisafi, P., Fink, G., Botstein, D., and Roth, J. R., 1976, Yeast suppressorsof UAA and UAG nonsense codons work efficiently in vitro via tRNA, Cell 7: 381–390.

    Article  PubMed  CAS  Google Scholar 

  • Gesteland, R. F., Wills, N., Lewis, J. B., and Grodzicker, T., 1978, Identification of amber and ochre mutants of the human virus Ad2+ND1, Proc. Natl. Acad. Sci. U.S.A. 74: 4567–4571.

    Article  Google Scholar 

  • Ghosh, K., and Ghosh, H. P., 1970, Role of modified nucleoside adjacent to 3’-end of anticodon in codon—anticodon interaction. Biochem. Biophys. Res. Commun. 40: 135–143.

    Article  PubMed  CAS  Google Scholar 

  • Ghysen, A., and Pironio, M., 1972, Relationship between the N function of bacteriophage X and host RNA polymerase, J. Mol. Biol. 65: 259–272.

    Article  PubMed  CAS  Google Scholar 

  • Gilbert, W., and Maxam, A., 1973, The nucleotide sequence of the lac operator. Proc. Natl. Acad. Sci. U.S.A. 70: 3581–3584.

    Article  PubMed  CAS  Google Scholar 

  • Gilmore, R. A., Stewart, J. W., and Sherman, F., 1971, Amino acid replacements resulting from super- suppression of nonsense mutants of iso-i-cytochrome c from yeast, J. Mol. Biol. 61: 157–173.

    Article  PubMed  CAS  Google Scholar 

  • Goodman, H. M., Olson, M. V., and Hall, B. D., 1977, Nucleotide sequence of a mutant eukaryotic gene: The yeast tyrosine-inserting ochre suppressor SUP4-O, Proc. Natl. Acad. Sci. U.S.A. 74: 54535457.

    Google Scholar 

  • Gopinathan, K. P., and Garen, A., 1970, A leucyl-transfer RNA by the amber suppressor gene Su6 +, J. Mol. Biol. 47: 393–401.

    Article  PubMed  CAS  Google Scholar 

  • Gorini, L., 1970, Informational suppression, Annu. Rev. Genet. 4: 107–134.

    Article  CAS  Google Scholar 

  • Gorini, L., 1971, Ribosomal discrimination of tRNAs, Nature New Biol. 234: 261–264.

    PubMed  CAS  Google Scholar 

  • Gorini, L., 1974, Streptomycin and misreading of the genetic code, in: Ribosomes ( M. Nomura, A. Tissières, and P. Lengyel, eds.), pp. 791–803, Cold Spring Harbor Lab., Cold Spring Harbor, New York.

    Google Scholar 

  • Grosjean, H., Still, D. G., and Crothers, D. M., 1976, Studies of the complex between transfer RNAs with complementary anticodons. I. Origins of enhanced affinity between complementary triplets, J. Mol. Biol. 103: 499–519.

    Article  PubMed  CAS  Google Scholar 

  • Grosjean, H. J., de Henau, S., and Crothers, D. M., 1978, On the physical basis for ambiguity in genetic coding interactions, Proc. Natl. Acad. Sci. U.S.A. 75: 610–614.

    Article  PubMed  CAS  Google Scholar 

  • Hagenbüchle, O., Santer, M., Steitz, J. A., and Mans, R. J., 1978, Conservation of the primary structure at the 3’-end of 18S rRNA from eucaryotic cells, Cell 13: 551–563.

    Article  PubMed  Google Scholar 

  • Hartman, P. E., and Roth, J. R., 1973, Mechanisms of suppression, Adv. Genet. 17: 1–105.

    Article  PubMed  CAS  Google Scholar 

  • Hawthorne, D. C., 1976, UGA mutations and UGA suppressors in yeast. Biochimie 58: 179–182.

    Article  PubMed  CAS  Google Scholar 

  • Hawthorne, D. C., and Leupold, U., 1974, Suppressors in yeast, Curr. Top. Microbiol. Immunol. 64: 1–47.

    Article  PubMed  CAS  Google Scholar 

  • Hayashi, H., and Soll, D., 1971, Purification of an E. coli leucine suppressor transfer RNA and its aminoacylation by the homologous leucyl-tRNA synthetase, J. Biol. Chem. 246: 4951–4954.

    PubMed  CAS  Google Scholar 

  • Hill, C. W., 1975, Informational suppression of missense mutations, Cell 6: 419–427.

    Article  CAS  Google Scholar 

  • Hiraga, S., and Yanofsky, C., 1972, Hyperlabile messenger RNA in polar mutants of the tryptophan operon of E. coli, J. Mol. Biol. 72: 103–110.

    Article  PubMed  CAS  Google Scholar 

  • Hirsh, D., 1971, Tryptophan transfer RNA as the UGA suppressor, J. Mol. Biol. 58: 439–458.

    Article  PubMed  CAS  Google Scholar 

  • Hirsh, D., and Gold, L., 1971, Translation of the UGA triplet in vitro by tryptophan transfer RNAs, J. Mol. Biol. 58: 459–468.

    Article  PubMed  CAS  Google Scholar 

  • Hofstetter, H., Monstein, H. J., and Weissmann, C., 1974, The readthrough protein Al is required for in vitro reconstitution of infectious QB particles, Experimentia 30: 687.

    Google Scholar 

  • Holmes, W. M., Goldman, E., Miner, T. A., and Hatfield, G. W., 1977, Differential utilization of leucyltRNAs by Escherichia coli, Proc. Natl. Acad. Sci. U.S.A. 74: 1393–1397.

    Article  PubMed  CAS  Google Scholar 

  • Hooper, M. L., Russell, R. L., and Smith, J. D., 1972, Mischarging in mutant tyrosine transfer RNAs, FEBS Lett. 22: 149–155.

    Article  PubMed  CAS  Google Scholar 

  • Hsiang, M. W., Cole, R. D., Takeda, Y., and Echols, H., 1977, Amino acid sequence of Cro regulatory protein of bacteriophage lambda, Nature 270: 275–277.

    Article  PubMed  CAS  Google Scholar 

  • Humayun, Z., 1977, DNA sequence at the end of the C1 gene in bacteriophage A, Nucleic Acids Res. 4: 2137–2144.

    Article  PubMed  CAS  Google Scholar 

  • Ikemura, T., Shimura, Y., Sakano, H., and Ozeki, H., 1975, Precursor molecules of Escherichia coli transfer RNAs accumulated in a temperature-sensitive mutant, J. Mol. Biol. 96: 69–86.

    Article  PubMed  CAS  Google Scholar 

  • Ilgen, C., Kirk, L. L., and Carbon, J., 1976, Isolation and characterization of large transfer ribonucleic acid precursors from Escherichia coli, J. Biol. Chem. 251: 922–929.

    PubMed  CAS  Google Scholar 

  • Inoko, H., and Imai, M., 1976, Isolation and genetic characterization of the nitA mutants of Escherichia coli affecting the termination factor rho, Mol. Gen. Genet. 143: 211–221.

    Article  PubMed  CAS  Google Scholar 

  • Inoko, H., Shigesada, K., and Imai, M., 1977, Isolation and characterization of conditional-lethal rho mutants of Escherichia coli, Proc. Natl. Acad. Sci. U.S.A. 74: 1162–1166.

    Article  PubMed  CAS  Google Scholar 

  • Inokuchi, H., Yamao, F., Yamagishi, H., Sakano, H., and Ozeki, H., 1975, Isolation of mischarging mutants of suppressor tRNA by using the transducing phages carrying sut and sut in E. coli, Genet. Soc. (Can.) Bull. 6: 37.

    Google Scholar 

  • Jacobson, K. B., 1971, Role of an isoacceptor transfer ribonucleic acid as an enzyme inhibitor: Effect on tryptophan pyrrolase of Drosophila, Nature New Biol. 231: 17–19.

    Article  PubMed  CAS  Google Scholar 

  • Jeffreys, A. J., and Flavell, R. A., 1977, The rabbit ß-globin gene contains a large insert in the coding sequence, Cell 12: 1097–1108.

    Article  PubMed  CAS  Google Scholar 

  • Jukes, T. H., 1977, How many anticodons? Science 198: 319–320.

    Article  PubMed  CAS  Google Scholar 

  • Kao, S.-H., and McClain, W. H., 1977, UGA suppressor of bacteriophage T4 associated with arginine transfer RNA, J. Biol. Chem. 252: 8254–8257.

    PubMed  CAS  Google Scholar 

  • Kaufmann, G., and Littauer, U. Z., 1974, Covalent joining of phenylalanine transfer ribonucleic acid half-molecules by T4 RNA ligase, Proc. Natl. Acad. Sci. U.S.A. 71: 3741–3745.

    Article  PubMed  CAS  Google Scholar 

  • Kiger, J. A., Jr., 1974, Participation of Drosophila tRNA in protein synthesis in an E. coli protein synthesizing system, Nucleic Acids Res. 1: 1269–1277.

    Article  PubMed  CAS  Google Scholar 

  • Kimball, M. E., and Söll, D. G., 1974, The phenylalanine tRNA from Mycoplasma sp. (Kid): A tRNA lacking hypermodified nucleosides functional in protein synthesis, Nucleic Acids Res. 1: 1713–1720.

    Article  PubMed  CAS  Google Scholar 

  • Kohli, J., Kwong, T. C., Altruda, F., Söll, D., and Wahl, G., 1978, Nonsense suppression in S. pombe: The efficient suppressors recognize UGA, J. Biol. Chem. (in press).

    Google Scholar 

  • Korn, L. J., and Yanofsky, C., 1976a, Polarity suppressors increase expression of the wild type tryptophan operon of Escherichia coli, J. Mol. Biol. 103: 395–409.

    Article  PubMed  CAS  Google Scholar 

  • Korn, L. J., and Yanofsky, C., 1976b, Polarity suppressors defective in transcription termination at the attenuator of the tryptophan operon of Escherichia coli have altered rho factors, J. Mol. Biol. 106: 231–241.

    Article  PubMed  CAS  Google Scholar 

  • Körner, A., Feinstein, S. I., and Altman, S., 1978, tRNA-mediated suppression, in: Transfer RNA (S. Altman, ed.), pp. 105–135. MIT Press, Cambridge, Massachusetts.

    Google Scholar 

  • Koski, R. A., Bothwell, A. L. M., and Altman, S., 1976, Identification of a ribonuclease P-like activity from human KB cells, Cell 9: 101–116.

    Article  PubMed  CAS  Google Scholar 

  • Kuchino, Y., Seno, T., and Nishimura, S., 1971, Fragmented E. coli methionine tRNAf as methyl acceptor for rat liver tRNA methylase: Alteration of the site of methylation by the conformational change of tRNA structure resulting from fragmentation, Biochem. Biophys. Res. Commun. 43: 476–483.

    Article  PubMed  CAS  Google Scholar 

  • Kurland, C. G., 1977, Structure and function of the bacterial ribosome, Annu. Rev. Biochem. 46: 173–200.

    Article  PubMed  CAS  Google Scholar 

  • Kurland, C. G., Rigler, R., Ehrenberg, M., and Blomberg, C., 1975, Allosteric mechanism for codondependent tRNA selection on ribosomes, Proc. Natl. Acad. Sci. U.S.A. 72: 4248–4251.

    Article  PubMed  CAS  Google Scholar 

  • Lagerkvist, U., 1978, Two out of three: An alternative method for codon reading, Proc. Natl. Acad. Sci. U.S.A. 75: 1759–1762.

    Article  PubMed  CAS  Google Scholar 

  • Last, J. A., and Anderson, W. F., 1976, Purification and properties of bacteriophage T4-induced RNA ligase, Arch. Biochem. Biophys. 174: 167–176.

    Article  PubMed  CAS  Google Scholar 

  • Liebman, S. W., and Sherman, F., 1976, Inhibition and growth by amber suppressors in yeast, Genetics 82: 233–249.

    PubMed  CAS  Google Scholar 

  • Liebman, S. W., Stewart, J. W., and Sherman, F., 1975, Serine substitution caused by an ochre suppressor in yeast, J. Mol. Biol. 94: 595–610.

    Article  PubMed  CAS  Google Scholar 

  • Liebman, S. W., Sherman, F., and Stewart, J. W., 1976, Isolation and characterization of amber suppressors in yeast, Genetics 82: 251–272.

    PubMed  CAS  Google Scholar 

  • Liebman, S. W., Stewart, J. W., Parker, J. H., and Sherman, F., 1977, Leucine insertion caused by a yeast amber suppressor, J. Mol. Biol. 109: 13–22.

    Article  PubMed  CAS  Google Scholar 

  • Lindsley, D. L., and Grell, E. H., 1968, Genetic variations of Drosophila melanogaster, Carnegie Institute Washington Publication No. 627.

    Google Scholar 

  • Litwack, M., and Peterkofsky, A., 1971, Transfer ribonucleic acid deficient in N6-(O2-isopentenyl)adenosine due to mevalonic acid limitation, Biochemistry 10: 994–1001.

    Article  PubMed  CAS  Google Scholar 

  • Loftfield, R B., and Vanderjagt, D., 1972, The frequency of errors in protein biosynthesis, Biochem. J. 128: 1353–1356.

    PubMed  CAS  Google Scholar 

  • Lu, P., and Rich, A., 1971, The nature of the polypeptide chain termination signal, J. Mol. Biol. 58: 513–531.

    Article  PubMed  CAS  Google Scholar 

  • Lu, P., Jarema, M., Mosser, K., and Daniel, W. E., Jr., 1976, lac repressor: 3-Fluorotyrosine substitution for nuclear magnetic resonance studies, Proc. Natl. Acad. Sci. U.S.A. 73: 3471–3475.

    Google Scholar 

  • Lund, E., and Dahlberg, J. E., 1977, Spacer transfer RNAs in ribosomal RNA transcripts of E. coli: Processing of 30S ribosomal RNA in vitro, Cell 11: 247–262.

    Article  PubMed  CAS  Google Scholar 

  • Lund, E., Dahlberg, J. E., Lindahl, L., Jaskunas, S. R., Dennis, P. P., and Nomura, M., 1976, Transfer RNA genes between 16S and 23S rRNA genes in rRNA transcription units of E. coli, Cell 7: 165–177.

    Article  PubMed  CAS  Google Scholar 

  • Marinus, M. G., Morris, N. R., Söll, D., and Kwong, T. C., 1975, Isolation and partial characterization of three Escherichia coli mutants with altered transfer ribonucleic acid methylases, J. Bacteriol. 122: 257–265.

    PubMed  CAS  Google Scholar 

  • Martin, J., and Webster, R. E., 1975, The in vitro translation of a terminating signal by a single Escherichia coli ribosome, J. Biol. Chem. 250: 8132–8139.

    PubMed  CAS  Google Scholar 

  • Maxam, A. M., and Gilbert, W., 1977, A new method for sequencing DNA, Proc. Natl. Acad. Sci. U.S.A. 74: 560–564.

    Article  PubMed  CAS  Google Scholar 

  • McClain, W. H., 1977, Seven terminal steps in a biosynthetic pathway leading from DNA to transfer RNA, Acc. Chem. Res. 10: 418–425.

    Article  CAS  Google Scholar 

  • McClain, W. H., and Seidman, J. G., 1975, Genetic perturbations that reveal tertiary conformation of tRNA precursor molecules, Nature 257: 106–110.

    Article  PubMed  CAS  Google Scholar 

  • McClain, W. H., Guthrie, C., and Barrell, B. G., 1972, Eight transfer RNAs induced by infection of Escherichia coli with bacteriophage T4, Proc. Natl. Acad. Sci. U.S.A. 69: 3703–3707.

    Article  PubMed  CAS  Google Scholar 

  • McCloskey, J. A., and Nishimura, S., 1977, Modified nucleosides in tRNA, Acc. Chem. Res. 10: 403–410.

    Article  CAS  Google Scholar 

  • McCready, S. J., Cox, B. S., and McLaughlin, C. S., 1977, The extrachromosomal control of nonsense suppression in yeast: An analysis of the elimination of [psi+] in the presence of a nuclear gene PNM -, Mol. Gen. Genet. 150: 265–270.

    Article  PubMed  CAS  Google Scholar 

  • Michels, C. A., and Zipser, D., 1969, Mapping of polypeptide reinitiation sites within the ß-galactosidase structural gene, J. Mol. Biol. 41: 341–347.

    Article  PubMed  CAS  Google Scholar 

  • Miller, J. H., Coulondre, C., Schmeissner, U., Schmitz, A,, and Lu, P., 1975, The use of suppressed nonsense mutations to generate altered lac repressor molecules, in: Protein—Ligand Interactions (H. Sund and G. Blauer, eds.), pp. 238–252, de Gruyter, Berlin.

    Google Scholar 

  • Miller, J. H., Ganem, D., Lu, P., and Schmitz, A., 1977, Genetic studies of the lac repressor. I. Correlation of mutational sites with specific amino acid residues: Construction of a colinear gene—protein map, J. Mol. Biol. 109: 275–301.

    Article  PubMed  CAS  Google Scholar 

  • Min Jou, W., Haegeman, G., Ysebaert, M., and Fiers, W., 1972, Nucleotide sequences of the gene coding for the bacteriophage MS2 coat protein, Nature 237: 82–88.

    Article  Google Scholar 

  • Mischke, D., Kloetzel, P., and Schwochau, M., 1975, Tryptophan pyrrolase activity regulation in Drosophila: Role of an isoacceptor tRNA unsettled, Nature 255: 79–80.

    Article  PubMed  CAS  Google Scholar 

  • Mitra, S. K., Lustig, F., Akesson, B., Lagerkvist, U., and Strid, L., 1977, Codon—anticodon recognition in the valine codon family, J. Biol. Chem. 252: 471–478.

    PubMed  CAS  Google Scholar 

  • Morgan, E. A., Ikemura, T., and Nomura, M., 1977, Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli, Proc. Natl. Acad. Sci. U.S.A. 74: 2710--2714.

    Article  PubMed  CAS  Google Scholar 

  • Morse, D. E., and Guertin, M., 1972, Amber suA mutations which relieve polarity, J. Mol. Biol. 63: 605–608.

    Article  PubMed  CAS  Google Scholar 

  • Morse, D. E., and Primakoff, P., 1970, Relief of polarity in E. colt by suA,“ Nature 226: 28–31.

    CAS  Google Scholar 

  • Morse, D. E., and Yanofsky, C., 1969, Polarity and the degradation of mRNA, Nature 224: 329–331.

    Article  PubMed  CAS  Google Scholar 

  • Müller-Hill, B., 1966, Suppressible regulator constitutive mutants of the lactose system in Escherichia coli, J. Mol. Biol. 15: 374–376.

    Article  PubMed  Google Scholar 

  • Müller-Hill, B., 1975, Lac repressor and lac operator, Prog. Biophys. Mol. Biol. 30: 227–252.

    Article  PubMed  Google Scholar 

  • Murgola, E. J., and Yanofsky, C., 1974, Suppression of glutamic acid codons by mutant glycine transfer ribonucleic acid, J. Bacteriol. 117: 439–443.

    PubMed  CAS  Google Scholar 

  • Nagata, T., and Horiuchi, T., 1973, Isolation and characterization of a temperature-sensitive amber suppressor mutant of Escherichia colt K12, Mol. Gen. Genet. 123: 77–88.

    Article  PubMed  CAS  Google Scholar 

  • Newton, W. A., Beckwith, J. P., Zipser, D., and Brenner, S., 1965, Nonsense mutants and polarity in the lac operon of Escherichia coli, J. Mol. Biol. 14: 290–296.

    Article  PubMed  CAS  Google Scholar 

  • Nichols, J. L., 1970, Nucleotide sequence from the polypeptide chain termination region of the coat protein cistron in bacteriophage R17 RNA, Nature 225: 147–151.

    Article  PubMed  CAS  Google Scholar 

  • Nichols, J. L., and Robertson, H. D., 1971, Sequences of RNA fragments from the bacteriophage f2 coat protein cistron which differ from their R17 counterparts, Biochim. Biophys. Acta 228: 676–681.

    PubMed  CAS  Google Scholar 

  • Ninio, J., 1974, A semi-quantitative treatment of missense and nonsense suppression in the strA and ram ribosomal mutants of Escherichia coli: Evaluation of some molecular parameters of translation in vivo, J. Mol. Biol. 84: 297–313.

    Article  PubMed  CAS  Google Scholar 

  • Nomura, M., Morgan, E. A., and Jaskunas, S. R., 1977, Genetics of bacterial ribosomes, Annu. Rev. Genet. 11: 297–347.

    Article  PubMed  CAS  Google Scholar 

  • Oakden, K. M., and Lane, B. G., 1976, Wheat embryo ribonucleates. VI. Comparison of the 3’-hydroxyl termini in “rapidly labelled” RNA from metabolizing wheat embryos with the corresponding termini in ribosomal RNA from differentiating embryos of wheat, barley, corn, and pea, Can. J. Biochem. 54: 261–271.

    Article  PubMed  CAS  Google Scholar 

  • Oeschger, M. P., and Woods, S. L., 1976, A temperature-sensitive suppressor enabling the manipulation of the level of individual proteins in intact cells, Cell 7: 205–212.

    Article  PubMed  CAS  Google Scholar 

  • Ohlsson, B. M., Strigini, P. F., and Beckwith, J. R., 1968, Allelic amber and ochre suppressors, J. Mol. Biol. 36: 209–218.

    Article  PubMed  CAS  Google Scholar 

  • Olson, M. V., Montgomery, D. L., Hopper, A. K., Page, G. S., Horodyski, F., and Hall, B. D., 1977, Molecular characterization of the tyrosine tRNA genes of yeast, Nature 267: 639–641.

    Article  PubMed  CAS  Google Scholar 

  • Orgel, L. E., 1972, Possible step in the origin of the genetic code, Isr. J. Chem. 10: 287–292.

    CAS  Google Scholar 

  • Ozaki, M., Mizushima, S., and Nomura, M., 1969, Identification and functional characterization of the protein controlled by the streptomycin-resistant locus in E. coli, Nature 222: 333–339.

    Article  PubMed  CAS  Google Scholar 

  • Pan, J., Reddy, V. B., Thimmappaya, B., and Weissman, S. M., 1977, Nucleotide sequence of the gene for the major structural protein of SV40 virus, Nucleic Acids Res. 4: 2539–2548.

    Article  PubMed  CAS  Google Scholar 

  • Pelham, R. B., and Jackson, R. J., 1976, An efficient mRNA-dependent translation system from reticulocyte lysates, Eur. J. Biochem. 67: 247–256.

    Article  PubMed  CAS  Google Scholar 

  • Person, S., and Osborn, M., 1968, The conversion of amber suppressors to ochre suppressors, Proc. Natl. Acad. Sci. U.S.A. 60: 1030–1037.

    Article  PubMed  CAS  Google Scholar 

  • Philipson, L., Andersson, P., Olshevsky, U., Weinberg, R., Baltimore, D., and Gesteland, R., 1978, Translation of MuLV and MSV RNAs in nuclease-treated reticulocyte extracts: Enhancement of the gag-pol polypeptide with yeast suppressor tRNA, Cell 13: 189–199.

    Article  PubMed  CAS  Google Scholar 

  • Pieczenik, G., 1972, Ph.D. Thesis, New York University, New York City.

    Google Scholar 

  • Piepersberg, W., Böck, A., and Wittmann, H. G., 1975, Effect of different mutations in ribosomal protein S5 of Escherichia coli on translational fidelity, Mol. Gen. Genet. 140: 91–100.

    Article  PubMed  CAS  Google Scholar 

  • Piper, P. W., Wasserstein, M., Engbaek, F., Kaltoft, K., Celis, J. E., Zeuthen, J., Liebman, S., and Sherman, F., 1976, Nonsense suppressors of Saccharomyces cerevisiae can be generated by mutation of the tyrosine tRNA anticodon, Nature 262: 757–761.

    Article  PubMed  CAS  Google Scholar 

  • Platt, T., and Yanofsky, C., 1975, An intercistronic region and ribosome-binding site in bacterial messenger RNA, Proc. Natl. Acad. Sci. U.S.A. 72: 2399–2403.

    Article  PubMed  CAS  Google Scholar 

  • Platt, T., Files, J. G., and Weber, K., 1973, lac repressor. Specific proteolytic destruction of the NH2-terminal region and loss of the deoxyribonucleic acid-binding activity, J. Biol. Chem. 248: 110–121.

    Google Scholar 

  • Pope, W. T., and Reeves, R. H., 1978a, Purification of the supK methylase, J. Bacteriol. (in press).

    Google Scholar 

  • Pope, W. T., Brown, A., and Reeves, R. H., 1978b, The identification of the tRNA substrates for the supK tRNA methylase, Nucleic Acids Res. 5: 1041–1057.

    Article  PubMed  CAS  Google Scholar 

  • Proudfoot, N. J., 1977, Complete 3’ noncoding region sequences of rabbit and human ß-globin messenger RNAs, Cell 10: 559–570.

    Article  PubMed  CAS  Google Scholar 

  • Proudfoot, N. J., and Longley, J. I„ 1976, The 3’ terminal sequences of human a and ß globin messenger RNAs: Comparison with rabbit globin messenger RNA, Cell 9: 733–746.

    Article  PubMed  CAS  Google Scholar 

  • Proudfoot, N. J., Gillam, S., Smith, M., and Longley, J., 1977, Nucleotide sequence of the 3’ terminal third of rabbit a-globin messenger RNA: Comparison with human a-globin messenger RNA, Cell 11: 807–818.

    Article  PubMed  CAS  Google Scholar 

  • Ratliff, J. C., and Caskey, C. T., 1977, Immunologic evidence for structural homology between the release factors of Escherichia coli, Arch. Biochem. Biophys. 181: 671–677.

    Article  PubMed  CAS  Google Scholar 

  • Ratner, D., 1976a, Evidence that mutations in the suA polarity suppressing gene directly affect termination factor rho, Nature 259: 151–153.

    Article  PubMed  CAS  Google Scholar 

  • Ratner, D., 1976b, The rho gene of E. coli maps at suA, in: RNA Polymerase ( R. Losick and M. Chamberlin, eds.), pp. 645–655, Cold Spring Harbor Lab., Cold Spring Harbor, New York.

    Google Scholar 

  • Reeves, R., and Roth, J. R., 1971, A recessive UGA suppressor, J. Mol. Biol. 56: 523–533.

    Article  PubMed  CAS  Google Scholar 

  • Remaut, E., and Fiers, W., 1972, Studies on the bacteriophage MS2 XVI. The termination signal of the A protein cistron, J. Mod. Biol. 71: 243–261.

    Article  CAS  Google Scholar 

  • Rich, A., and Schimmel, P. R., 1977, Structural organization of complexes of transfer RNAs with aminoacyl transfer RNA synthetase, Nucleic Acids Res. 5: 1649–1665.

    Article  Google Scholar 

  • Richardson, J. P., Grimley, C., and Lowery, C., 1975, Transcription termination factor rho activity is altered in Escherichia coli with suA gene mutations, Proc. Natl. Acad. Sci. U.S.A. 72: 1725–1733.

    Article  PubMed  CAS  Google Scholar 

  • Riddle, D., and Carbon, J., 1973, A nucleotide addition in the anticodon of a glycine transfer RNA, Nature New Biol. 242: 230–234.

    PubMed  CAS  Google Scholar 

  • Riddle, D., and Roth, J., 1972a, Frameshift suppressors. II. Genetic mapping and dominance studies, J. Mol. Biol. 66: 483–493.

    Article  PubMed  CAS  Google Scholar 

  • Riddle, D., and Roth, J., 1972b, Frameshift suppressors. III. Effects of suppressor mutations on transfer RNA, J. Mol. Biol. 66: 495–506.

    Article  PubMed  CAS  Google Scholar 

  • Ritossa, F. M., Atwood, K. C., and Spiegelman, S., 1966, On the redundancy of DNA complementary to amino acid transfer RNA and its absence from the nucleolar organizer region of Drosophila melanogaster, Genetics 54: 663–676.

    PubMed  CAS  Google Scholar 

  • Riyasaty, S., and Atkins, J., 1968, External suppression of a frameshift mutant in Salmonella, J. Mol. Biol. 34: 541–557.

    Article  PubMed  CAS  Google Scholar 

  • Roberts, J. W., 1969, Termination factor for RNA synthesis, Nature 224: 1168–1174.

    Article  PubMed  CAS  Google Scholar 

  • Roberts, J. W., and Carbon, J., 1974, Molecular mechanism for missense suppression in E. coli, Nature 250: 412–414.

    Article  PubMed  CAS  Google Scholar 

  • Roberts, T. R., Shimatake, H., Brady, C., and Rosenberg, M., 1977, Sequence of cro gene of bacteriophage lambda, Nature 270: 274–275.

    Article  PubMed  CAS  Google Scholar 

  • Rosenbaum, N., and Gefter, M. L., 1972, Q2-Isopentenylpyrophosphate:transfer ribonucleic acid Azisopentenyltransferase from Escherichia coli, J. Biol. Chem. 247: 5675–5680.

    PubMed  CAS  Google Scholar 

  • Rosset, R., and Gorini, L., 1969, A ribosomal ambiguity mutation, J. Mol. Biol. 39: 95–112.

    Article  PubMed  CAS  Google Scholar 

  • Roth, J. R., 1974, Frameshift mutations, Annu. Rev. Genet. 8: 319–346.

    Article  PubMed  CAS  Google Scholar 

  • Sadler, J., and Novick, A., 1965, The properties of repressor and the kinetics of its action, J. Mol. Biol. 12: 305–327.

    Article  PubMed  CAS  Google Scholar 

  • Sakano, H., and Shimura, Y., 1975, Sequential processing of precursor tRNA molecules in Escherichia coli, Proc. Natl. Acad. Sci. U.S.A. 72: 3369–3373.

    Article  PubMed  CAS  Google Scholar 

  • Sakano, H., Yamada, S., Ikemura, T., Shimura, Y., and Ozeki, H., 1974, Temperature sensitive mutants of Escherichia cou for tRNA synthesis, Nucleic Acids Res. 1: 355–371.

    Article  PubMed  CAS  Google Scholar 

  • Salser, W., 1969, The influence of the reading context upon the suppression of nonsense codons, Mol. Gen. Genet. 105: 125–130.

    Article  PubMed  CAS  Google Scholar 

  • Salser, W., Fluck, M., and Epstein, R., 1969, The influence of the reading context upon the suppression of nonsense codons. III. Cold Spring Harbor Symp. Quant. Biol. 34: 513–520.

    Article  PubMed  CAS  Google Scholar 

  • Sanger, F., Air, G. M., Barrell, B. G., Brown, N. L., Coulson, A. R., Fiddes, J. C., Hutchison, C. A., III, Slocombe, P. M., and Smith, M., 1977a. Nucleotide sequence of bacteriophage ¢X174 DNA, Nature 265: 687–695.

    Article  PubMed  CAS  Google Scholar 

  • Sanger, F., Nicklen, S., and Coulson, A. R., 1977b, DNA sequencing with chain terminating inhibitors, Proc. Natl. Acad. Sci. U.S.A. 74: 5463–5467.

    Article  PubMed  CAS  Google Scholar 

  • Sarabhai, A., and Brenner, S., 1967, A mutant which reinitiates the polypeptide chain after chain termination, J. Mol. Biol. 27: 145–162.

    Article  PubMed  CAS  Google Scholar 

  • Schedl, P., and Primakoff, P., 1973, Mutants of Escherichia cou thermosensitive for the synthesis of transfer RNA, Proc. Natl. Acad. Sci. U.S.A. 70: 2091–2095.

    Article  PubMed  CAS  Google Scholar 

  • Schlegel, R., and Rechsteiner, M. C., 1975, Microinjection of thymidine kinase and bovine serum albumin into mammalian cells by fusion with red blood cells, Cell 5: 371–379.

    Article  PubMed  CAS  Google Scholar 

  • Schmeissner, U., Ganem, D., and Miller, J. H., 1977, Genetic studies of the lac repressor. II. Fine structure deletion map of the lac I gene, and its correlation with the physical map, J. Mol. Biol. 109: 303–326.

    Article  PubMed  CAS  Google Scholar 

  • Schmidt, F. J., Seidman, J. G., and Bock, R. M., 1976, Transfer ribonucleic acid biosynthesis. Substrate specificity of ribonuclease P, J. Biol. Chem. 251: 2440–2445.

    PubMed  CAS  Google Scholar 

  • Schmitz, A., Schmeissner, U., Miller, J. H., and Lu, P., 1976, Mutations affecting the quaternary structure of the lac repressor, J. Biol. Chem. 251: 3359–3366.

    PubMed  CAS  Google Scholar 

  • Schweizer, E., Mackechnie, C., and Halvorson, H. O., 1968, The redundancy of ribosomal and transfer RNA genes in Saccharomyces cerevisiae, J. Mol. Biol. 40: 261–277.

    Article  Google Scholar 

  • Scolnick, E. M., and Caskey, C. T., 1969, Peptide chain termination. V. The role of release factors in mRNA terminator codon recognition, Proc. Natl. Acad. Sci. U.S.A. 64: 1235–1241.

    Article  PubMed  CAS  Google Scholar 

  • Scolnick, E., Tompkins, R., Caskey, T., and Nirenberg, M., 1968, Release factors differing in specificity for terminator codons, Proc. Natl. Acad. Sci. U.S.A. 61: 768–774.

    Article  PubMed  CAS  Google Scholar 

  • Seeburg, P. H., Shine, J., Martial, J. A., Ullrich, A., Baxter, J. D., and Goodman, H. M., 1977, Nucleotide sequence of part of the gene for human chorionic somatomammotropin: Purification of DNA complementary to predominant mRNA species, Cell 12: 157–165.

    Article  PubMed  CAS  Google Scholar 

  • Segawa, T., and Imamoto, F., 1974, Diversity of regulation of genetic transcription. II. Specific relaxation of polarity in read-through transcription of the translocated trp operon in bacteriophage lambda trp, J. Mol. Biol. 87: 741–754.

    Article  PubMed  CAS  Google Scholar 

  • Seidman, J. G., Comer, M. M., and McClain, W. H., 1974, Nucleotide alterations in the bacteriophage T4 glutamine transfer RNA that affect ochre suppressor activity, J. Mol. Biol. 90: 677–689.

    Article  PubMed  CAS  Google Scholar 

  • Sherman, F., Liebman, S. W., Stewart, J. W., and Jackson, M., 1973, Tyrosine substitutions resulting from suppression of amber mutants of iso-l-cytochrome c in yeast, J. Mol. Biol. 78: 157–168.

    Article  PubMed  CAS  Google Scholar 

  • Shershneva, L. D., Venkstern, T. V., and Bayev, A. A., 1971, A study of tRNA methylases by the dissected molecule method, FEBS Lett. 14: 297–298.

    Article  PubMed  CAS  Google Scholar 

  • Shimura, Y., Aono, H., Ozeki, H., Sarabhai, A., Lamfrom, H., and Abelson, J., 1972, Mutant tyrosine tRNA of altered amino acid specificity, FEBS Lett. 22: 144–148.

    Article  PubMed  CAS  Google Scholar 

  • Shine, J., and Dalgarno, L., 1974, The 3’-terminal sequence of Escherichia cob 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites, Proc. Natl. Acad. Sci. U.S.A. 71: 1342–1346.

    Article  PubMed  CAS  Google Scholar 

  • Shine, J., and Dalgarno, L., 1975a, Determinant of cistron specificity in bacterial ribosomes, Nature 254: 34–38.

    Article  PubMed  CAS  Google Scholar 

  • Shine, J., and Dalgarno, L., 1975b, Terminal sequence analysis of bacterial ribosomal RNA. Correlation between the 3’-terminal polypyrimidine sequence of 16S RNA and translational specificity of the ribosome, Eur. J. Biochem. 57: 221–230.

    Article  PubMed  CAS  Google Scholar 

  • Simoncsits, A., Brownlee, G. G., Brown, R. S., Rubin, J. R., and Guilley, H., 1977, New rapid gel sequencing method for RNA, Nature 269: 833–836.

    Article  PubMed  CAS  Google Scholar 

  • Smith, J. D., 1972, Genetics of transfer RNA, Annu. Rev. Genet. 6: 235–256.

    Article  PubMed  CAS  Google Scholar 

  • Smith, J. D., 1976, Transcription and processing of transfer RNA precursors, Prog. Nucleic Acid Res. Mol. Biol. 16: 25–73.

    Article  PubMed  CAS  Google Scholar 

  • Smith, J. D., and Celis, J. E., 1973, Mutant tyrosine transfer RNA that can be charged with glutamine, Nature New BioL 243: 66–71.

    Article  PubMed  CAS  Google Scholar 

  • Smith, J. D., Abelson, J. N., Clark, B. F. C., Goodman, H. M., and Brenner, S., 1966, Studies on amber suppressor tRNA, Cold Spring Harbor Symp. Quant. Biol. 31: 479–485.

    Article  PubMed  CAS  Google Scholar 

  • Smrt, J., Kemper, W., Caskey, T., and Nirenberg, M., 1970, Template activity of modified terminator codons, J. Biol. Chem. 245: 2753–2757.

    PubMed  CAS  Google Scholar 

  • Still, D., 1968, Studies on polynucleotides. LXXXV. Partial purification of an amber suppressor tRNA and studies on in vitro suppression, J. Mol. Biol. 34: 175–187.

    Article  Google Scholar 

  • Söll, D., and Schimmel, P. R., 1974, Aminoacyl-tRNA synthetases, in: The Enzymes, Vol. X ( P. Boyer, ed.), pp. 489–538, Academic Press, New York.

    Google Scholar 

  • Söll, D., Cherayil, J., Jones, D. S., Faulkner, R. D., Hampel, A., Bock, R. M., and Khorana, H. G., 1966, sRNA specificity for codon recognition as studied by the ribosomal binding technique, Cold Spring Harbor Symp. Quant. Biol. 31: 51–61.

    Google Scholar 

  • Soll, L., 1974, Mutational alterations of tryptophan-specific transfer RNA that generate translation suppressors of the UAA, UAG and UGA nonsense codons, J. Mol. Biol. 86: 233–243.

    Article  PubMed  CAS  Google Scholar 

  • Soll, L., and Berg, P., 1969, Recessive lethal nonsense suppressor in Escherichia coli which inserts glutamine, Nature 223: 1340–1342.

    Article  PubMed  CAS  Google Scholar 

  • Sommer, H., Lu, P., and Miller, J. H., 1976, Lac repressor. Fluorescence of the two tryptophans, J. Biol. Chem. 251: 3774–3779.

    CAS  Google Scholar 

  • Sprague, K. U., Steitz, J. A., Grenley, R. M., and Stocking, C. E., 1977, 3’ terminal sequences of 16S rRNA do not explain translational specificity differences between E. coli and B. stearothermophilus ribosomes, Nature 267: 462–465.

    Google Scholar 

  • Sprinzl, M., Grüter, F., and Gauss, D. H., 1978, Collection of published tRNA sequences, Nucleic Acids Res. 5: 15–27.

    Google Scholar 

  • Squires, C., Konrad, B., Kirschbaum, J., and Carbon, J., 1973, Three adjacent transfer RNA genes in Escherichia coli, Proc. Natl. Acad. Sci. U.S.A. 70: 438–441.

    Article  CAS  Google Scholar 

  • Steege, D. A., 1977, 5’ terminal nucleotide sequence of Escherichia coli lactose repressor mRNA: Features of translational initiation and reinitiation sites, Proc. Natl. Acad. Sci. U.S.A. 74: 4163–4167.

    Google Scholar 

  • Steege, D. A., and Low, B., 1975, Isolation and characterization of lambda transducing bacteriophages for the sut+ (supD-) amber suppressor of Escherichia coli, Bacterial. 122: 120–128.

    CAS  Google Scholar 

  • Summers, W. P., Wagner, M., and Summers, W. C., 1975, Possible peptide chain termination mutants in thymidine kinase gene of a mammalian virus, herpes simplex virus, Proc. NatL Acad. Sci. U.S.A. 72: 4081–4084.

    Article  PubMed  CAS  Google Scholar 

  • Tate, W. P., and Caskey, C. T., 1974, The mechanism of peptide chain termination, Mol. Cell. Biochem. 5: 115–126.

    Article  PubMed  CAS  Google Scholar 

  • Tate, W. P., Beaudet, A. L., and Caskey, C. T., 1973, Influence of guanine nucleotides and elongation factors on interaction of release factors with the ribosome, Proc. Natl. Acad. Sci. U.S.A. 70: 2350–2355.

    Article  PubMed  CAS  Google Scholar 

  • Tate, W. P., Caskey, C. T., and Stöffler, G., 1975, Inhibition of peptide chain termination by antibodies specific for ribosomal proteins, J. Mol. Biol. 93: 375–389.

    Article  PubMed  CAS  Google Scholar 

  • Thuriaux, P., Minet, M., Hofer, F., and Leupold, U., 1975, Genetic analysis of antisuppressor mutants in the fission yeast Schizosaccharomyces pombe, Mol. Gen. Genet. 142: 251–261.

    Google Scholar 

  • Tompkins, R. K., Scolnick, E. M., and Caskey, C. T., 1970, Peptide chain termination. VII. The ribosomal and release factor requirements for peptide release, Proc. Natl. Acad. Sci. U.S.A. 65: 702–708.

    Article  PubMed  CAS  Google Scholar 

  • Topisirovic, L., Villarroel, R., DeWilde, M., Herzog, A., Cabezón, T., and Bollen, A., 1977, Translational fidelity in Escherichia coli: Contrasting role of neaA and ramA gene products in the ribosome functioning, Mol. Gen. Genet. 151: 89–94.

    Article  PubMed  CAS  Google Scholar 

  • Twardzik, D. R, Grell, E. and Jacobson, K. B., 1971, Mechanism of suppression in Drosophila: A change in tyrosine transfer RNA, J. Mol. Biol. 57: 231–245.

    Article  PubMed  CAS  Google Scholar 

  • Valenzuela, P., Venegas, A., Weinberg, F., Bishop, R., and Rutter, W. J., 1978, Structure of yeast phenylalanine-tRNA genes. An intervening DNA segment within the region coding for the tRNA, Proc. Natl. Acad. Sci. U.S.A. 75: 190–194.

    Article  PubMed  CAS  Google Scholar 

  • Weiner, A. M., and Weber, K., 1973, A single UGA codon functions as a natural termination signal in the coliphage QB coat protein cistron, J. Mol. Biol. 80: 837–855.

    Article  PubMed  CAS  Google Scholar 

  • Weissmann, C., Taniguchi, T., Domingo, E., Sabo, D., and Flavell, R. A., 1977, Site-directed mutagenesis as a tool in genetics, in: 14th Miami Winter Symposium ( J. Schultz and Z. Brada, eds.), pp. 11–36, Academic Press, New York.

    Google Scholar 

  • Weissenbach, J., Dirheimer, G., Falcoff, R., Sanceau, J., and Falcoff, E., 1977, Yeast tRNA (anticodon U-A-G) translates all six leucine codons in extracts from interferon treated cells, FEBS Lett. 82: 71–76.

    Article  PubMed  CAS  Google Scholar 

  • White, B. N., Tener, G. M., Holden, J., and Suzuki, D. T., 1973, Activity of a transfer RNA modifying enzyme during the development of Drosophila and its relationship to the su(s) locus, J. Mol. Biol. 74: 635–651.

    Article  PubMed  CAS  Google Scholar 

  • Wilson, J. T., de Riel, J. K., Forget, B. G., Marotta, C. A., and Weissman, S. M., 1977, Nucleotide sequence of 3’ untranslated portion of human alpha globin mRNA, Nucleic Acids Res. 4: 2353–2368.

    Article  PubMed  CAS  Google Scholar 

  • Wittmann, H. G., Stöffier, G., Piepersberg, W., Buckel, P., Ruffler, D., and Böck, A., 1974, Altered S5 and S20 ribosomal proteins in revertants of an alanyl-tRNA synthetase mutant of Escherichia coli, Mol. Gen. Genet. 134: 225–236.

    Article  PubMed  CAS  Google Scholar 

  • Wosnick, M. A., and White, B. N., 1977, A doubtful relationship between tyrosine tRNA and suppression of the vermilion mutant in Drosophila, Nucleic Acids Res. 4: 3919–3930.

    Article  PubMed  CAS  Google Scholar 

  • Wu, M., and Davidson, N., 1975, Use of gene 32 protein staining of single-strand polynucleotides for gene mapping by electron microscopy: Application to the 480d3ilvsu+7 system, Proc. Natl. Acad. Sci. U.S.A. 72: 4506–4510.

    Article  PubMed  CAS  Google Scholar 

  • Yahata, H., Ocada, Y., and Tsugita, A., 1970, Adjacent effect on suppression efficiency. II. Study of ochre and amber mutants of T4 phage lysozyme, Mol. Gen. Genet. 106: 208–212.

    Article  PubMed  CAS  Google Scholar 

  • Yaniv, M., Folk, W. R., Berg, P., and Soll, L., 1974, A single modification of a tryptophan-specific transfer RNA permits aminoacylation by glutamine and translation of the codon UAG, J. Mol. Biol. 86: 245–260.

    Article  CAS  Google Scholar 

  • Yanofsky, C., and Soll, L., 1977, Mutations affecting tRNAT “ and its charging and their effect on regulation of transcription termination at the attenuator of the tryptophan operon, J. Mol. Biol. 113: 663–677.

    Article  PubMed  CAS  Google Scholar 

  • Yates, J. L., Gette, W. R., Furth, M. E., and Nomura, M., 1977, Effects of ribosomal mutations on the read-through of a chain termination signal: Studies on the synthesis of bacteriophage À O gene protein in vitro, Proc. Natl. Acad. Sci. U.S.A. 74: 689–693.

    Article  PubMed  CAS  Google Scholar 

  • Yoshida, M., Takeishi, K., and Ukita, T., 1970, Anticodon structure of a GAA-specific glutamic acid tRNA from yeast, Biochem. Biophys. Res. Commun. 39: 852–857.

    Article  PubMed  CAS  Google Scholar 

  • Yoshida, M., Takeishi, K., and Ukita, T., 1971, Structural studies on a yeast glutamic acid tRNA specific to GAA codon, Biochim. Biophys. Acta 228: 153–166.

    PubMed  CAS  Google Scholar 

  • Yourno, J., and Tanemura, S., 1970, Restoration of in-phase translation by an unlinked suppressor of a frameshift mutation in Salmonella typhimurium, Nature 225: 422–426.

    Article  CAS  Google Scholar 

  • Zengel, J. M., Young, R., Dennis, P. P., and Nomura, M., 1977, Role of ribosomal protein S12 in peptide chain elongation: Analysis of pleiotropic, streptomycin-resistant mutants of Escherichia coli, J. Bacteriol. 129: 1320–1329.

    CAS  Google Scholar 

  • Zilberstein, A., Dudock, B., Berissi, H., and Revel, M., 1976, Control of messenger RNA translation by minor species of leucyl-transfer RNA in extracts from interferon-treated L cells, J. Mol. Biol. 108: 43–54.

    Article  PubMed  CAS  Google Scholar 

  • Zimmermann, R. A., Garvin, R. T., and Gorini, L., 1971, Alteration of a 30S ribosomal protein accompanying the ram mutation in Escherichia coli, Proc. Natl. Acad. Sci. U.S.A. 68: 2263–2267.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1979 Plenum Press, New York

About this chapter

Cite this chapter

Steege, D.A., Söll, D.G. (1979). Suppression. In: Goldberger, R.F. (eds) Biological Regulation and Development. Biological Regulation and Development, vol 1. Springer, Boston, MA. https://doi.org/10.1007/978-1-4684-3417-0_11

Download citation

  • DOI: https://doi.org/10.1007/978-1-4684-3417-0_11

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4684-3419-4

  • Online ISBN: 978-1-4684-3417-0

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics