Abstract
The excision repair pathway in mammalian cells is a complex process involving a number of enzymatic steps. My laboratory has focused on the initial endonuclease mediated step. Our approach has been to develop a method to isolate biologically active endonucleases from mammalian nuclei and examine them for specificity of action on DNA containing specific types of damage (e.g., apurinic/apyrimidinic sites, interstrand cross-links, pyrimidine dimers, monoadducts, intercalated adducts). Using this methodology, we have isolated a series of nine chromatin-associated DNA endonucleases from the nuclei of normal human cells. We have been able to detect individual selective activities of these endonucleases on a number of different types of damaged DNA, and have found that different ones of them recognize different types of DNA damage. We have also examined the endonucleases in cells from patients with a number of genetic diseases known to be deficient in DNA repair (i.e., xeroderma pigmentosum and Fanconi’s anemia). The results have indicated different defects associated with the endonuclease(s), depending upon the genetic disease.
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References
Adolph, K., 1988. Chromosomes and Chromatin, Volumes 1 and 2, CRC Press, Inc., Boca Raton, Florida.
Amari, N.M.B., W.C. Lambert and M.W. Lambert, 1986. Comparison of histones in normal and xeroderma pigmentosum lymphoblastoid cells, Cell. Biol. Intl. Reports, 10:875–880.
Averbeck, D., D. Papadopoulo and E. Moustacchi, 1988. Repair of 4, 5′, 8-trimethylpsoralen plus light-induced DNA damage in normal and Fanconifs anemia cells, Cancer Res., 48: 2015–2020.
Ben-Hur, E. and M.M. Elkind, 1973. Psoralen plus near ultraviolet light inactivation of cultured Chinese hamster cells and its relation to DNA cross-links, Mutation Res., 18:315–324.
Ben-Hur, E. and P-S. Song, 1984. The photochemistry and photobiology of furocoumarins (psoralens). Adv. Radiat. Biol., 11:131–177.
Bickley, L.R. and M.W. Lambert, 1988. DNA binding of an apurinic/apyrimidinic DNA endonuclease activity from xeroderma pigmentosum cells, Cell Biol. Int. Rep., 12:231–237.
Bohr, V.A., 1987. Differential DNA repair within the genome, Cancer Rev., 7:28–55.
Bredberg, A., 1982. Genetic toxicity of psoralen and ultraviolet radiation in human cells, Acta Dermato-Venereol., 104:1–40.
Bredberg, A., B. Lambert and S. Soderhall, 1982. Induction and repair of psoralen cross-links in DNA of normal human and xeroderma pigmentosum fibroblasts, Mutation Res., 93:221–234.
Cimino, G.D., H.B. Gamper, S.T. Isaacs, and J.E. Hearst, 1985. Psoralens as photoactive probes of nucleic acid structure and function: organic chemistry, photochemistry, Annu. Rev. Biochem., 54:1151–1193.
Chu, G. and E. Chang, 1988. Xeroderma pimentosum group E cells lack a nuclear factor that binds to damaged DNA, Science, 242:564–567.
Cleaver, J.E., 1971. Repair of alkylation damage in ultraviolet sensitive (xeroderma pigmentosum) human cells, Mutation Res., 12:453–462.
Davie, J.R., L. Numerou and G.P. Delcuve, 1986. The nonhistone chromosomal protein, H2A-specific protease, is selectively associated with nucleosomes containing histone H1, J. Biol. Chem., 261:10410–10416.
Dean, S.W., H.R. Sykes, and A.R. Lehmann, 1988. Inactivation by nitrogen mustard of plasmids introduced into normal and Fanconi’s anemia cells, Mutation Res., 194:57–63.
De Jonge, A.J.R., W. Vermeulen, B. Klein and J.H.J. Hoeijmakers, 1983. Microinjection of human cell extracts corrects xeroderma pigmentosum defect, EMBO J., 2:637–641.
Digweed, M., S. Zakrzewski-Ludcke, and K. Sperling, 1988. Fanconi’s anemia: correlation of genetic complementation group with psoralen/UVA response, Hum. Genet., 78:51–54.
Duckworth-Rysiecki, G., K. Cornish, C.A. Clarke and M. Buchwald, 1985. Identification of two complementation groups in Fanconi’s anemia, Somatic Cell and Mol. Genet., 11: 35–41.
Elia, M.C. and E.N. Moudrianakis, 1988. Regulation of H2A-specific proteolysis by histone H3:H4 tetramer, J. Biol. Chem., 263:9958–9964.
Eriksson, M., B. Norden, and S. Eriksson, 1988. Anthracycline-DNA interactions studied with linear dichroism and fluorescence spectroscopy, Biochemistry, 27:8144–8151.
Feldberg, R.S. and L. Grossman, 1976. A DNA binding protein from human placenta specific for ultraviolet damaged DNA, Biochemistry, 15:2402–2408.
Fialkoff, H., M.F. Goodman and M.W. Seraydarian, 1979. Differential effect of adriamycin on DNA replicative and repair synthesis in cultured neonatal rat cardiac cells, Cancer Res., 39:1321–1327.
Friedberg, E.C., V.K. Ehmann and J.I. Williams, 1979. Human diseases associated with defective DNA repair, Adv. Radiat. Biol., 8:85–174.
Friedberg, E.C., 1984. DNA Repair, W.H. Freeman and Company, New York, 40–54.
Fujiwara, Y., M. Tatsumi, and M.S. Sasaki, 1977. Cross-link repair in human cells and its possible defect in Fanconi’s anemia cells, J. Mol. Biol., 113:635–649.
Gia, O., G. Palu, M. Palumbo, C. Antonello and S. Marciani Magno, 1987. Photoreaction of psoralen derivatives with structurally organized DNA, Photochem. Photobiol., 45: 87–92.
Giannelli, F., S.A. Pawsey and J.A. Avery, 1982. Differences in patterns of complementation of the more common groups of xeroderma pigmentosum: possible implications, Cell, 29:451–458.
Grunenert, D.C. and J.E. Cleaver, 1985. Repair of psoraleninduced cross-links and mono-adducts in normal and repair-deficient human fibroblasts, Cancer Res., 45:5399–5404.
Hanawalt, P.C., P.K. Cooper, A.K. Ganesan, R.S. Lloyd, C.A. Smith and M.E. Zolan, 1982. Repair responses to DNA damage: Enzymatic pathways in E. coli and human cells, J. Cell. Biochem., 18:271–283.
Hittleman, W.N., 1986. Visualization of chromatin events during DNA excision repair in xeroderma pigmentosum cells: deficiency in localized but not generalized chromatin events, Carcinogenesis, 7:1975–1980.
Hiwasa, T., M. Segana, N. Yamaguchi and K. Oda, 1981. Phasing of nucleosomes in SV40 chromatin reconstituted in vitro, J. Biochem., 89:1375–1389.
Hough, P.V.C., I.A. Mastrangelo, J.S. Wall, J.F. Hainfeld, M.N. Simon and J.L. Manley, 1982. DNA-protein complexes spread on N2-discharged carbon film and characterized by molecular weight and its projected distribution, J. Mol. Biol., 160:375–386.
Igo-Kemenes, T.W., W. Horz and H.G. Zachau, 1982. Chromatin. Annu. Rev. Biochem., 51:89–121.
Ishida, R. and M. Buchwald, 1982. Susceptibility of Fanconi’s anemia lymphoblasts to DNA-cross-linking and alkylating agents, Cancer Res., 42:4000–4006.
Ishimi, Y., Y. Ohba, H. Yasuda and M. Yamada, 1981. The interaction of H1 histone with nucleosome core, J. Biochem., 89:1881–1888.
Kano, Y. and Y. Fujiwara, 1983. Defective thymine dimer excision from xeroderma pigmentosum chromatin and its characteristic catalysis by cell-free extracts, Carcinogenesis, 4:1419–1424.
Kaye, J., C.A. Smith and P.C. Hanawalt, 1980. DNA repair in human cells containing photoadducts of 8-methoxypsoralen or angelicin, Cancer Res., 40:696–702.
Kaysen, J.H., N.M.B. Amari and M.W. Lambert, 1986. Enhancement of two apurinic/apyrimidinic endonuclease activities from normal but not xeroderma pigmentosum lymphoblastoid cells by nucleosome structure, Mutation Res., 165:221–231.
Kaysen, J.H., N.M.B. Amari, and M.W. Lambert, 1987. Positioning of nucleosomes reconstituted with xeroderma pigmentosum and normal histones, Cell. Biol. Intl. Reports, 11:95–101.
Klingholz, R. and W.H. Stratling, 1982. Reassociation of histone H1 to H1-depleted polynucleosomes, J. Biol. Chem., 257:13101–13107.
Kraemer, K.H., M.M. Lee and J. Scotto, 1987. Xeroderma Pigmentosum: cutaneous, ocular, and neurological abnormalities in 830 published cases, Arch. Dermatol., 123:241–250.
Kuhnlein, U., S.S. Tsang, O. Lokken, S. Tong, and D. Twa, 1983. Cell lines from xeroderma pigmentosum complementation group A lack a single-stranded-DNA-binding-activity, Bioscience Reports. 3:667–674.
Kuhnlein, U. 1985. Comparison of apurinic DNA-binding protein from an ataxia telangiectasia and a HeLa cell line, J. Biol. Chem., 260:14918–14924.
Kuhnlein, U., E.E. Penhoet and S. Linn, 1976. An altered apurinic DNA endonuclease activity in group A and group D xeroderma pigmentosum fibroblasts, Proc. Natl. Acad. Sci. (U.S.A.), 73:1169–1173.
Lambert, B., M. Sten, S. Soderhall, U. Ringborg and R. Lewenshon, 1983. DNA repair replication, DNA breaks and sister-chromatid exchange in human cells treated with adriamycin in vitro, Mutation Res., 3:171–184.
Lambert, M.W., D. Fenkart and M. Clarke, 1988. Two DNA. endonuclease activities from normal human and xeroderma pigmentosum chromatin active on psoralen plus ultraviolet light treated DNA, Mutation Res., 193:65–73.
Lambert, M.W., W.C. Lambert and A.O. Okorodudu, 1983. Nuclear DNA endonuclease activities on partially apurinic/apyrimidinic DNA in normal human and xeroderma pigmentosum lymphoblastoid cells and mouse melanoma cells, Chem.Biol. Interact., 46:109–120.
Lambert, M.W., D.E. Lee, A.O. Okorodudu, and W.C. Lambert, 1982. Nuclear deoxyribonuclease activities in human lymphoblastoid and mouse melanoma cells: a comparative study, Biochim. Biophys. Acta, 69:192–203.
Lambert, W.C. and M.W. Lambert, 1987. DNA repair deficiency and cancer in xeroderma pigmentosum, Cancer Rev., 7:1–25.
Lan, S.Y. and M.J. Smerdon, 1985. A nonuniform distribution of excision repair synthesis in nucleosomal DNA, Biochemistry, 24:7771–7783.
Laval, J. and F. Laval, 1980. Enzymology of DNA repair, in: Molecular and Cellular Aspects of Carcinogen Screening Tests, IARC Scientific Publication Lyon, 27:55–73.
Lee, Y.C. and J.E. Byfield, 1976. Brief communication: Induction of DNA degradation in vivo by adriamycin, J. Natl. Cancer Inst., 57:221–224.
Lehmann, A.R. and P. Karran, 1981. DNA repair, Int. Rev. Cytol., 72:101–146.
Lehmann, A.R. and S. Kirk-Bell, 1978. DNA — binding proteins in xeroderma pigmentosum fibroblasts, Experimental Cell Research, 114:197–201.
Lewensohn R. and U. Ringborg 1983. Inhibition of nitrogen mustard induced DNA repair synthesis by anathracyclines in human peripheral leukocytes Cancer Lett. 18:305–310.
Lindahl, T., 1982. DNA repair enzymes, Annu. Rev. Biochem., 51:61–87.
Lindahl. T. and B. Nyberg, 1972. Rate of depurination of native deoxyribonucleic acid, Biochemistry, 11:3610–3618.
Manley, J.L., A. Fire, A. Cano, P.A. Sharp and M.L. Gefter, 1980. DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract, Proc. Natl. Acad. Sci. (U.S.A.), 77:3855–3859.
Matson, S.W., P.J. Fay and R.A. Bambara, 1980. Mechanism of inhibition of the avian myeloblastosis virus deoxyribonucleic acid polymerase by adriamycin, Biochemistry, 19:2089–2096.
McGhee, J.D and G. Felsenfeld, 1980. Nucleosome structure, Annu. Rev. Biochem., 49:1115–1156.
Mortelmans, K., E.C. Friedberg, H. Slor, G. Thomas, and J.E. Cleaver, 1976. Defective thymine dimer excision by cell-free extracts of xeroderma pigmentosum cells, Proc. Natl. Acad. Sci. (U.S.A.). 73:2757–2761.
Moses, R.E. and A.L. Beaudit, 1978. Apurinic DNA endonuclease activities in repair deficient human cell lines, Nucleic Acid Res., 5:463–473.
Moustacchi, E., D. Papadopoulo, C. Diatloff-Zito and M. Buchwald, 1987. Two complementation groups of Fanconi’s anemia differ in their phenotypic response to a DNA-crosslinking treatment, Human Genet., 75:45–47.
Moustacchi, E., D. Papadopoulo, D. Averbeck, D. Fraser and C. Diatloff-Zito, 1989. Processing of photoinduced crosslinks and monoadducts in human cell DNA: genetic and molecular features. In: M.W. Lambert and J. Laval (Eds.), DNA Repair Mechanisms and Their Biological Implications in Mammalian Cells, Plenum Press, Inc., New York, in press.
Okorodudu, A.O., W.C. Lambert and M.W. Lambert, 1982. Nuclear deoxyribonuclease activities in normal and xeroderma pigmentosum lymphoblastoid cells, Biochem. Biophys. Res. Commun., 108:576–584.
Pachter, J.A., C.-H. Huang, V.H. Duvernay, Jr., A.W. Prèstayko, and S.T. Crooke, 1982. Visometric and fluorometric studies of deoxyribonucleic acid interactions of several new anthracyclins, Biochemistry, 21:1541–1547.
Papadopoulo D., D. Averbeck and E. Moustacchi, 1988. High level of 4, 5’, 8-trimethylpsoralen photoinduced furan-side monoadducts can block cross-link removal in normal human cells, Photochem. Photobiol., 47:321–326.
Parrish, D.D. and M.W. Lambert, 1989. Chromatin-associated DNA endonucleases from xeroderma pigmentosum cells are defective in interaction with damaged nucleosomal DNA, Mutation Res., In press.
Ringborg, U., and B. Lambert, 1978. Inhibition of DNA repair synthesis by adriamycin and daunomycin, J. Supramol. Struct., 2(Suppl.):93.
Ross, W.E. and M.O. Bradley, 1981. DNA double-strand breaks in mammalian cells after exposure to intercalating agents, Biochim. Biophys. Acta, 654:129–134.
Ross, W.E. and M.C. Smith, 1982. Repair of deoxyribonucleic acid lesions caused by adriamycin and ellipticine, Photochem. Photobiol., 31:1931–1935.
Rubin, J.S., 1988. Review: The molecular genetics of the incision step in the DNA excision repair process, Int. J. Radiat. Biol., 3:309–365.
Santella, R.M., N. Dharmaraja, F.P. Gasparro and R.L. Edelson, 1985. Monoclonal antibodies to DNA modified by 8-methoxypsoralen and ultraviolet A light, Nuc. Acids Res., 13: 2533–2544.
Sasaki, M.S., K. Toda and A. Ozawa, 1977. in: M. Seiji and I.A. Bernstein (Eds), Biochemistry of Cutaneous Epidermal Differentiation, Univ. of Tokyo Press, Tokyo, 167.
Sasaki, M.S. and A. Tonomura, 1973. A high susceptibility of Fanconi’s anemia to chromosome breakage by DNA-crosslinking agents, Cancer Res., 33:1829–1836.
Schmid, B. and G. Zbinden, 1979. Unscheduled DNA synthesis in male rabbit germ cells induced by methylmethane sulfonate, cyclophosphamide and adriamycin, Arch. Toxicol., 2(suppl.):503–507.
Setlow, R.B., J.D. Regan, J. German, and C.L. Carrier, 1969. Evidence that xeroderma pigmentosum cells do not perform the first step in the repair of ultraviolet damage to their DNA, Proc. Natl. Acad. Sci. USA, 64:1035–1041.
Smerdon, M.J., 1989. DNA excision repair at the nucleosomal level of chromatin. In: DNA Repair Mechanisms and Their Biological Implications in Mammalian Cells. M.W. Lambert and J. Laval, eds. Plenum Press, Inc., New York, in press.
Snyder, R.D., and J.D. Regan, 1982. DNA repair in normal human and xeroderma pigmentosum group A fibroblasts following treatment with various methanesulfonates and demonstration of a long-patch (U.V.-like) repair component, Carcinogenesis, 3:7–14.
Sollner-Webb, B., R.D. Camerini-Otero and G. Felsenfeld, 1976. Chromatin structure as probed by nucleases and proteases: Evidence for the central role of histones H3 and H4, Cell, 9:179–193.
Song, P.-S. and K.J. Tapley, Jr., 1979. Photochemistry and photobiology of psoralens, Photochem. Photobiol., 29: 1177–1197.
Stitch, H.F., R.H.C. San and Y. Kanajoe, 1973. Increased sensitivity of xeroderma pigmentosum cells to some chemical carcinogens and mutagens, Mutation Res., 17:127–137.
Tanaka, K., M. Sekiguchi and Y. Okada, 1975. Restoration of ultraviolet-induced DNA synthesis of xeroderma pigmentosum cells by the contact treatment with bacteriophage T4 endonuclease V (Sendai virus), Proc. Natl. Acad. Sci. (U.S.A.), 72:4071–4075.
Tanaka, M. and S. Yoshida, 1980. Mechanisms of the inhibition of calf thymus DNA polymerase alpha and beta by daunomycin and adriamycin, J. Biochem., 87:911–918.
Teebor, G.W. and K. Frenkel, 1983. The initiation of DNA repair, Adv. Cancer Res., 38:23–59.
Thielmann, H.W. and I. Witte, 1980. Correlation of the colony forming abilities of xeroderma pigmentosum fibroblasts with repair-specific DNA incision reactions, catalyzed by cell free extracts, Arch. Toxicol., 44:197–207.
Tomura, T. and J.L Van Lanker, 1980. The action of a mammalian endonuclease on psoralen-bound DNA, Chem.-Biol.Interact., 31:179–188.
Tsongalis, G.J., W.C. Lambert and M.W. Lambert, 1990. Electroporation of normal human DNA endonucleases into xeroderma pigmentosum cells corrects their DNA repair defect, Carcinogenesis, In press.
Vigny, P., F. Gaboriau, L. Voituriez and J. Cadets, 1985. Chemical Structure of psoralen-nucleic acid photoadducts, Biochimie, 67:317–325.
Waring, M.J., 1981. DNA modification and cancer, Ann. Rev. Biochem., 50:159–192.
Watanabe, F., 1984. Condensation of polynucleosomes by histone H1 binding, FEBS Lett., 170:19–22.
Witte, I., and H.W. Thielmann, 1979. Extracts of xeroderma pigmentosum group A fibroblasts introduce less nicks into methyl methanesulfonate-treated DNA than extracts of normal fibroblasts, Cancer Letters, 6:129–136.
Wood, R.D., P. Robins, and T. Lindahl, 1988. Complementation of the xeroderma pigmentosum DNA repair defect in cell-free extracts, Cell, 53:97–106.
Yamaizumi, M., T. Sugano, H. Asahina, Y. Okada, and T. Uchida, 1986. Microinjection of partially purified protein factor restores DNA damage specifically in group A of xeroderma pigmentosum cells, Proc. Natl. Acad. Sci. (U.S.A.), 83: 1476–1479.
Zunio, F., R. Gambetta, A. DiMarco, A. Velcich, A. Zaccara, F. Quadrifoglio, and V. Crescenzi, 1977. The interaction of adriamycin and its anomer with DNA, Biochem. Biophys. Acta., 476:38–46.
Zwelling, L.A., S. Michaels, L.C. Erickson. R.S. Ungerleider, M. Nichols and K.W. Kohn, 1981. Protein-associated deoxyribonucleic acid strand breaks in L1210 cells treated with the deoxyribonucleic acid intercalating agents 4′-(9-Acridinylamino)methanesulfon-m-anisidide and adriamycin, Biochemistry, 20:6553–6563.
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Lambert, M.W., Parrish, D.D. (1989). Modulation of Activity of Human Chromatin-Associated Endonucleases on Damaged DNA by Nucleosome Structure. In: Lambert, M.W., Laval, J. (eds) DNA Repair Mechanisms and Their Biological Implications in Mammalian Cells. NATO ASI Series, vol 182. Springer, Boston, MA. https://doi.org/10.1007/978-1-4684-1327-4_27
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