Skip to main content

Homology, Characters, and Morphometric Data

  • Chapter
Fossils, Phylogeny, and Form

Part of the book series: Topics in Geobiology ((TGBI,volume 19))

Abstract

The use of quantitative shape data in phylogenetic studies has been challenged on several grounds, the most important being that hypotheses of homology cannot apply to them. Two premises underlie that argument: (1) quantitative data comprise a single homogeneous class, and (2) qualitative and quantitative data are fundamentally different. The first premise is problematic because some morphometric variables are constrained to compare homologous features of organisms, whereas others are not. Those that are so constrained, including traditional measurement data, shape coordinates and partial warps, yield features that can be assessed for their similarities and differences, and the resulting hypotheses of homology can be tested for their congruence with the cladogram. Those variables that are not so constrained, including most outline-based variables as well as multivariate constructs such as principal components and canonical variates, may be useful tools discriminating and sorting taxa by overall similarities in shape, but not for dis-covering characters. The second premise is also problematic because the same logic and methods apply to both qualitative and quantitative data alike. Thus, if care is taken to ensure that morphometric comparisons are framed in terms of homology, there is no barrier to using quantitative variables in phylogenetic studies, especially those produced by geometric morphometrics. Not only are they tools for describing shape differences, they are also tools for understanding the evolutionary history of shape.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Adams, D.C., and Rosenberg, M.S. Partial-warps, phylogeny, and ontogeny: A comment on Fink and Zelditch (1995). Systematic Biology 1998; 47:167–172.

    Google Scholar 

  • Atchley, W.R., and Anderson, D. Ratios and the statistical analysis of biological data. Systematic Zoology 1978; 27:71–78.

    Google Scholar 

  • Atchley, W.R., Gaskins, C.T., and Anderson, D. Statistical properties of ratios. I. Empirical results. Systematic Zoology 1976; 25:137–148.

    Article  Google Scholar 

  • Bookstein, F.L. Size and shape spaces for landmark data in two dimensions. Statistical Science 1986; 1:181–242.

    Article  Google Scholar 

  • Bookstein, F.L. Principal warps: thin-plate splines and the decomposition of deformations. IEEE Transactions on Pattern Analysis and Machine Intelligence 1989; 11:567–585.

    Article  Google Scholar 

  • Bookstein, F.L. Morphometric Tools for Landmark Data: Geometry and Biology. Cambridge: Cambridge University Press, 1991.

    Google Scholar 

  • Bookstein, F.L. Can biometrical shape be a homologous character? In Homology: The Hierarchical Basis of Comparative Biology, B. K. Hall, ed., p. 198–227. New York: Academic Press, 1994.

    Google Scholar 

  • Bookstein, F.L., Chernoff, B., Elder, R., Humphries, J., Smith, G., and Strauss, R. Morphometries in Evolutionary Biology. Philadelphia: The Academy of Natural Sciences of Philadelphia, 1985.

    Google Scholar 

  • Bookstein, F.L., and Green, W.D.K. A feature space for edgels in images with landmarks. Journal of Mathematical Imaging and Vision 1993; 3:231–261.

    Article  Google Scholar 

  • Chappill, J.A. Quantitative characters in phylogenetic analysis. Cladistics 1989; 5:217–234.

    Article  Google Scholar 

  • Cranston, P.S., and Humphries, C.J. Cladistics and computers: A chironomid conundum? Cladistics 1988; 4:72–92.

    Article  Google Scholar 

  • Crowe, T. Morphometries, phylogenetic models and cladistics: Means to an end or much ado abot nothing? Cladistics 1994; 10:77–84.

    Article  Google Scholar 

  • David, B., and Laurin, B. Morphometries and cladistics: measuring phylogeny in the sea urchin Echinocardium. Evolution 1996; 50:348–359.

    Article  Google Scholar 

  • Davis, D.D. Comparative anatomy and the evolution of vertebrates. In Genetics, Paleontology and Evolution, G. L. Jepsen, E. Mayr, and G. G. Simpson, eds. Princeton: Princeton University Press, 1949.

    Google Scholar 

  • Donoghue, M.J. Homology. In Keywords in Evolutionary Biology, E. F. Keller and E. A. Lloyd, eds. Cambridge, MA: Harvard University Press, 1992.

    Google Scholar 

  • Ehrlich, R., and Weinberg, B. An exact method for the characterization of grain shape. Journal of Sedimentary Petrology 1970; 40:205–212.

    Google Scholar 

  • Ferson, S., Rohlf, F.J., and Koehn, R.K. Measuring shape variation of two-dimensional outlines. Systematic Zoology 1985; 34:59–68.

    Article  Google Scholar 

  • Fink, W.L., and Zelditch, M.L. Phylogenetic analysis of ontogenetic shape transformations: A reassessment of the piranha genus Pygocentrus (Teleostei). Systematic Biology 1995; 44:343–360.

    Google Scholar 

  • Hansell, R.I.C., Bookstein, F.L., and Rowell, H.J. Operational point homology by Cartesian transformation to standard shape—examples from setal positions in phytoseiid mites. Systematic Zoology 1980; 29:43–49.

    Article  Google Scholar 

  • Jardine, N. The concept of homology in biology. British Journal for the Philosophy of Science 1967; 18:125–139.

    Article  Google Scholar 

  • Key, K.H.L. Operational homology. Systematic Zoology 1967; 16:275–276.

    Article  Google Scholar 

  • Lestrel, P.E. Introduction. In Fourier Descriptors and Their Applications in Biology, P. E. Lestrel, ed., p. 3–21. Cambridge: Cambridge University Press, 1997.

    Chapter  Google Scholar 

  • Lohmann, G.P., and Schweitzer, P.N. On eigenshape analysis. In Proceedings of the Michigan Morphometrics Workshop, F.J. Rohlf and F.L. Bookstein, eds., Vol. Special Publication 2, pp. 147–166. Ann Arbor: University of Michigan Museum of Zoology, 1990.

    Google Scholar 

  • MacLeod, N. Generalizing and extending the eigenshape method of shape space visualization and analysis. Paleobiology 1999; 25:197–138.

    Google Scholar 

  • McLellan, T., and Endler, J.A. The relative success of some methods for measuring and describing the shape of complex objects. Systematic Biology 1998; 47:264–282.

    Article  Google Scholar 

  • Mickevich, M.F., and Weller, S.J. Evolutionary character analysis: Tracing character change on a cladogram. Cladistics 1990; 6:137–170.

    Article  Google Scholar 

  • Patterson, C. Morphological characters and homology. In Problems of Phylogenetic Reconstruction, K.A. Joysey and A.E. Friday, eds., p. 21–74. London: Academic Press, 1982.

    Google Scholar 

  • Pimentel, R.A., and Riggins, R. The nature of cladistic data. Cladistics 1987; 3:201–209.

    Article  Google Scholar 

  • Pleijel, F On character coding for phylogeny reconstruction. Cladistics 1995; 11:305–315.

    Article  Google Scholar 

  • Pogue, M.G., and Mickevich, M.F. Character definitions and character state delineations: The bete noire of phylogenetic inference. Cladistics 1980; 6:319–364.

    Article  Google Scholar 

  • Rae, T.C. The logical basis for the use of continuous characters in phylogenetic systematics. Cladistics 1998; 14:221–228.

    Article  Google Scholar 

  • Rohlf, F. J. On applications of geometric morphometries to studies of ontogeny and phylogeny. Systematic Biology 1998; 47:147–158.

    Article  Google Scholar 

  • Simon, C. A new coding procedure for morphometric data with an example from periodical cicada wing veins. In Numerical Taxonomy, J. Felsenstein, ed., p. 378–283. Berlin: Springer-Verlag, 1983.

    Chapter  Google Scholar 

  • Swiderski, D.L. Morphological evolution of the scapula in tree squirrels, chipmunks, and ground squirrels (Sciuridae): An analysis using thin-plate splines. Evolution 1993; 47:1854–1873.

    Article  Google Scholar 

  • Swiderski, D.L., Zelditch, M.L., and Fink, W.L. Why morphometries isn’t special: Coding quantitative data for phylogenetic analysis. Systematic Biology 1998; 47:508–519.

    Google Scholar 

  • Thiele, K. The holy grail of the perfect character: The cladistic treatment of morphometric data. Cladistics 1993; 9: 275–304.

    Article  Google Scholar 

  • Wilkinson, M. A comparison of two methods of character construction. Cladistics 1995; 11:297–308.

    Article  Google Scholar 

  • Zahn, C.T., and Roskies, R.Z. Fourier descriptors for plane closed curves. IEEE Transactions on Computing 1972; 21:269–281.

    Article  Google Scholar 

  • Zelditch, M.L., Bookstein, F.L., and Lundrigan, B.L. Ontogeny of integrated skull growth in the cotton rat Sigmodon fulviventer. Evolution 1992; 46:1164–1180.

    Article  Google Scholar 

  • Zelditch, M.L., Fink, W. L., and Swiderski, D.L. Morphometries, homology and phylogenetics: Quantified characters as synapomorphies. Systematic Biology 1995; 44:179–189.

    Google Scholar 

  • Zelditch, M.L., and Fink, W.L. Ontogeny and phylogeny: A reply to Adams and Rosenberg. Systematic Biology 1998; 47: 345–348.

    Google Scholar 

  • Zelditch, M.L., Swiderski, D.L., and Fink, W.L. Discovery of phylogenetic characters in morphometric data. In Morphological Data in Phylogenetic Analysis: Recent Progress and Unresolved Problems, J. Wiens. Washington, D. C: Smithsonian Press, 2000a. (In press).

    Google Scholar 

  • Zelditch, M.L., Sheets, H.D., and Fink, W.L. Spatiotemporal reorganization of growth rates in the evolution of ontogeny. Evolution 2000b (in press).

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2001 Springer Science+Business Media New York

About this chapter

Cite this chapter

Zelditch, M.L., Swiderski, D.L., Fink, W.L. (2001). Homology, Characters, and Morphometric Data. In: Adrain, J.M., Edgecombe, G.D., Lieberman, B.S. (eds) Fossils, Phylogeny, and Form. Topics in Geobiology, vol 19. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-0571-6_5

Download citation

  • DOI: https://doi.org/10.1007/978-1-4615-0571-6_5

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4613-5137-5

  • Online ISBN: 978-1-4615-0571-6

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics