Skip to main content
SpringerLink
Log in

Functional Analysis of Promoter Elements in Plants

  • Chapter
Book cover Genetic Engineering

Part of the book series: Genetic Engineering: Principles and Methods ((GEPM,volume 25))

Abstract

Plant growth and development involve temporal and spatial expression of the specific genes subsets in response to various physiological and environmental factors mediated by complex signal transduction pathways. A minimal gene regulatory network typically consists of an input signal receptor and a transduction pathway linking the extracellular environment with intracellular targets, a core complex of transacting regulatory proteins and relevant cis-acting DNA sequences, and a subsequent molecular output (RNA and protein) from the target genes. Generally, the result of the activation of such a regulatory pathway is stimulation or repression of expression of the genes coding for structural, metabolic and behavioral capacities of the plant cell. In addition, such networks often include dynamic feedback loops that provide for further regulation of the network architecture and output.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Log in via an institution
Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Katagiri, F. and Chua, N.-H. (1992) Trends Genet. 8, 22–27.

    Article  PubMed  CAS  Google Scholar 

  2. Chandler, V.L. and Vaucheret, H. (2001) Plant Physiol. 125, 145–148.

    Article  PubMed  CAS  Google Scholar 

  3. Roberts, S.G. and Green, M.R. (1994) Nature 371, 717–720.

    Article  PubMed  CAS  Google Scholar 

  4. Guilfoyle, T. (1997) in Genetic Engineering: Principles and Methods(J.K. Setlow,ed.) 19, 15–47.

    Google Scholar 

  5. Spector, DL. (1993) Annu. Rev. Cell Biol. 9, 265–315.

    Article  PubMed  CAS  Google Scholar 

  6. Roeder, R.G. (1996) Trends Biochem. Sci. 21, 327–335.

    PubMed  CAS  Google Scholar 

  7. Dvir, A., Conaway, J.W. and Conaway R.C. (2001) Curr. Opin. Genet. Dev. 11,209–214.

    Article  PubMed  CAS  Google Scholar 

  8. Rogers, H.J., Bate, N., Combe, J., Sullivan, J., Sweetman, J., Swan, C., Lonsdale,D.M. and Twell, D. (2001) Plant Mol. Biol. 45, 577–585.

    CAS  Google Scholar 

  9. Rushton, P., Reinstadler, A., Lipka, V., Lippok, B. and Somssich, I.E. (2002) Plant Cell 14, 749–762.

    Article  PubMed  CAS  Google Scholar 

  10. Hoeren, F.U., Dolferus, R., Wu, Y., Peacock, W.J. and Dennis, E.S. (1998) Genetics 149, 479–490.

    PubMed  CAS  Google Scholar 

  11. Maeo, K., Tomiya, T., Hayashi, K., Akaike, M., Morikami, A., Ishiguro, S. and Nakamura, K. (2001) Plant Mol. Biol. 46, 627–637.

    CAS  Google Scholar 

  12. Sidorenko, L.V., Li, X., Cocciolone, S.M., Chopra, S., Tagliani, L., Bowen, B.,Daniels, M. and Peterson, T. (2000) Plant J. 22, 471–482.

    Article  CAS  Google Scholar 

  13. Lebel, E., Heifetz, P., Thorne, L., Uknes, S., Ryals, J. and Ward, E. (1998) Plant J. 16, 223–233.

    Article  PubMed  CAS  Google Scholar 

  14. Roulet, E., Busso, S., Camargo, A.A., Simpson, A.J., Mermod, N. and Bucher, P.(2002) Nature Biotech.20, 831–835.

    CAS  Google Scholar 

  15. Hilbricht, T., Salamini, F. and Bartels, D. (2002) Plant J. 31, 293–303.

    Article  CAS  Google Scholar 

  16. Moss, T., Dimitrov, S.I. and Houde, D. (1997) Methods: A companion to Meth.Enzymol. 11, 225–234.

    Article  CAS  Google Scholar 

  17. Ouwerkerk, P.B. and Memelink, J. (1999) Mol. Gen. Genet. 261, 635–643.

    Article  PubMed  CAS  Google Scholar 

  18. Dey, N. and Maiti, I.B. (1999) Plant Mol. Biol. 40, 771–782.

    CAS  Google Scholar 

  19. Ohgishi, M., Oka, A., Morelli, G., Ruberti, I. and Aoyama, T. (2001) Plant J. 25,389–398.

    Article  CAS  Google Scholar 

  20. Canton, F.R. and Quail, P.H. (1999) Plant Physiol. 121, 1207–1216.

    Article  PubMed  CAS  Google Scholar 

  21. Yamaguchi, Y., Itoh, Y., Takeda, Y. and Yamazaki, K. (1998) Plant Mol. Biol.38, 1247–1252.

    CAS  Google Scholar 

  22. Mueller, C. (2001) Curr. Opin. Struct. Biol. 11, 26–32.

    Article  Google Scholar 

  23. Riechmann, J.L., Heard, J., Martin, G., Reuber, L., Jiang, C., Keddie, J., Adam,L., Pineda, O., Ratcliffe, O.J., Samaha, R.R., Creelman, R., Pilgrim, M., Broun, P., Zhang, J.Z., Ghandehari, D., Sherman, B.K. and Yu, G. (2000) Science 290, 2105–2110.

    Article  PubMed  CAS  Google Scholar 

  24. Tyagi, A.K. (2001) Curr. Sci. 80, 161–169.

    CAS  Google Scholar 

  25. Zawel, L. and Reinberg, D. (1995) Annu. Rev. Biochem. 64, 533–561.

    Article  PubMed  CAS  Google Scholar 

  26. Davison, B.L., Egly, J.M., Mulvihill, E.R. and Chambon, P. (1983) Nature 301,680–686.

    Article  PubMed  CAS  Google Scholar 

  27. Singer, V.L., Wobbe, C.R. and Struhl, K. (1990) Genes Dev. 4, 636–645.

    Article  PubMed  CAS  Google Scholar 

  28. Hahn, S., Buratowski, S., Sharp, P.A. and Guarente, L. (1989) Proc. Nat. Acad.Sci. U.S.A. 86, 5718–5722.

    Article  CAS  Google Scholar 

  29. Smale, S.T. and Baltimore, D. (1989) Cell 57, 103–113.

    Article  PubMed  CAS  Google Scholar 

  30. Martinez, E., Chiang, C.M., Ge, H. and Roeder, R.G. (1994) EMBO J. 13, 3115–3126.

    PubMed  CAS  Google Scholar 

  31. Javahery, R., Khachi, A., Lo, K., Zenzie-Gregory, B. and Smale S.T. (1994) Mol.Cell Biol. 14, 116–127.

    PubMed  CAS  Google Scholar 

  32. Nakamura, M., Tsunoda, T. and Obokata, J. (2002) Plant J. 29, 1–10.

    Article  PubMed  CAS  Google Scholar 

  33. Burke, T.W. and Kadonaga, J.T. (1997) Genes Dev. 11, 3020–3031.

    Article  PubMed  CAS  Google Scholar 

  34. He, X., Futterer, J. and Hohn, T. (2002) Nucl. Acids Res. 30, 497–506.

    Article  PubMed  CAS  Google Scholar 

  35. Lagrange, T., Kapanidis, A.N., Tang, H., Reinberg, D. and Ebright, R.H. (1998) Genes Dev. 12, 34–44.

    Article  PubMed  CAS  Google Scholar 

  36. Mouradov, A., Mouradova, E. and Scott, K.J. (1994) Plant Mol. Biol. 26, 503–507.

    CAS  Google Scholar 

  37. Smale, S.T. (2001) Genes Dev. 15, 2503–2508.

    Article  PubMed  CAS  Google Scholar 

  38. Dynan, W.S., Sazer, S., Tjian, R. and Schimke, R.T. (1986) Nature 319, 246–248.

    Article  PubMed  CAS  Google Scholar 

  39. Nielsen, S.J., Praestegaard, M., Jorgensen, H.F. and Clark, B.F. (1998) Biochem.J. 333, 511–517.

    PubMed  CAS  Google Scholar 

  40. Minami, E.I., Ozeki, Y., Matsuoka, M., Koizaka, N. and Tanaka, Y. (1989) Eur. J.Biochem. 185, 19–25.

    Article  PubMed  CAS  Google Scholar 

  41. Sun, C., Sathish, P., Ahlandsberg, S. and Jansson, C. (1998) Plant Physiol. 118,37–49.

    Article  PubMed  CAS  Google Scholar 

  42. Nozue, K., Fukuda, S., Kanegae, T. and Wada, M. (1998) Plant Physiol. 118, 712–718.

    Google Scholar 

  43. Gelinas, R., Endlich, B., Pfeiffer, C., Yagi, M. and Stamatoyannopoulos, G.(1985) Nature 313, 323–325.

    Article  PubMed  CAS  Google Scholar 

  44. Rieping, M. and Schöffl, F. (1992) Mol. Gen. Genet. 231, 226–232.

    PubMed  CAS  Google Scholar 

  45. Ito, T., Fujimoto, Y., Nakayama, T. and Iwabuchi, M. (1995) Plant Cell Physiol.36,1281–1289.

    PubMed  CAS  Google Scholar 

  46. Edwards, D., Murray, J.A.H. and Smith, A.G. (1998) Plant Physiol. 117, 1015–1022.

    Article  PubMed  CAS  Google Scholar 

  47. Toki, S., Takamatsu, S., Nojiri, C., Ooba, S., Anzai, H., Iwata, M., Christensen,A.H., Quail, P.H. and Uchimiya, H. (1992) Plant Physiol. 100, 1503–1507.

    Article  PubMed  CAS  Google Scholar 

  48. Zhang, W., McElroy, D. and Wu, R. (1991) Plant Cell 3, 1155–1165.

    PubMed  CAS  Google Scholar 

  49. Fankhauser, C. and Chory, J. (1997) Annu. Rev. Cell Dev. Biol. 13, 203–229.

    Article  PubMed  CAS  Google Scholar 

  50. Kuno, N. and Furuya, M. (2000) Semin. Cell Dev. Biol. 6, 485–493

    Google Scholar 

  51. Terzaghi, W.B. and Cashmore, A.R. (1995) Annu. Rev. Plant Physiol. Plant Mol.Biol. 46, 445–474.

    Article  CAS  Google Scholar 

  52. Arguello-Astorga, G.R. and Herrera-Estrella, L.R. (1996) Plant Physiol. 112,1151–1166.

    Article  PubMed  CAS  Google Scholar 

  53. Gilmartin, P.M, Sarokin, L., Memelink, J. and Chua, N.-H. (1990) Plant Cell 2,369–378.

    PubMed  CAS  Google Scholar 

  54. Puente, P., Wei, N. and Deng, X.W. (1996) EMBO J. 15, 3732–3743.

    PubMed  CAS  Google Scholar 

  55. Chattopadhyay, S., Puent, P., Deng, X.W. and Wei, N. (1998) Plant J. 15, 69–77.

    Article  PubMed  CAS  Google Scholar 

  56. Schulze-Lefert, P., Becker-Andre, M., Schulz, W., Hahlbrock, K. and Dangl, J.L.(1989) Plant Cell 1, 707–714.

    PubMed  CAS  Google Scholar 

  57. Kusnetsov, V., Bolle, C., Lubberstedt, T., Sopory, S., Hens’ Bann, R.G., and Zhou,D.-X. (1999) Trends Plant Sci. 4, 210–214.

    Article  Google Scholar 

  58. Teakle, G.R., Manfield, I.W., Graham, J.F. and Gilmartin, P.M. (2002) Plant Mol.Biol. 50, 43–57.

    CAS  Google Scholar 

  59. Oyama, T., Shimura, Y. and Okada, K. (1997) Genes Dev. 11, 2983–2995.

    Article  PubMed  CAS  Google Scholar 

  60. Martinez-Hernandez, A., Lopez-Ochoa, L., G Arguello-Astorga, G. and Herrera-Estrella, L. (2002) Plant Physiol. 128, 1223–1233.

    Article  PubMed  CAS  Google Scholar 

  61. Sheen, J., Zhou, L. and Jang, J.C. (1999) Curr. Opin. Plant Biol. 2, 410–418.

    Article  PubMed  CAS  Google Scholar 

  62. Abel, S., Ballas, N., Wong, L.M. and Theologis, A. (1996) Bioessays 18, 647–654.

    Article  PubMed  CAS  Google Scholar 

  63. Guilfoyle, T., Hagen, G., Ulmasov, T. and Murfett, J. (1998) Plant Physiol. 118,341–347.

    Article  PubMed  CAS  Google Scholar 

  64. Ballas, N., Wong, L.-M., Ke, M. and Theologis, A. (1995) Proc. Nat. Acad. Sci.U.S.A. 92, 3483–3487.

    Article  CAS  Google Scholar 

  65. Liu, Z.B., Ulmasov, T., Shi, X., Hagen, G. and Guilfoyle, T.J. (1994) Plant Cell 6,645–657.

    PubMed  CAS  Google Scholar 

  66. Ulmasov, T., Liu, Z.-B., Hagen, G. and Guilfoyle, T.J. (1995) Plant Cell 7, 1611–1623.

    PubMed  CAS  Google Scholar 

  67. Xu, N., Hagen, G. and Guilfoyle, T.J. (1997) Plant Sci. 126, 193–201.

    Article  CAS  Google Scholar 

  68. Hagen, G. and Guilfoyle, T. (2002) Plant Mol. Biol. 49, 373–385.

    CAS  Google Scholar 

  69. Ulmasov, T., Hagen, G. and Guilfoyle, T.J. (1997) Science 276, 1865–1868.

    Article  PubMed  CAS  Google Scholar 

  70. Ulmasov, T., Murfett, J., Hagen, G. and Guilfoyle, T.J. (1997) Plant Cell 9, 1963–1971.

    PubMed  CAS  Google Scholar 

  71. Liscum, E. and Reed, J.W. (2002) Plant Mol. Biol. 49, 387–400.

    CAS  Google Scholar 

  72. Abel, S. and Theologis, A. (1996) Plant Physiol. 111, 9–17.

    Article  PubMed  CAS  Google Scholar 

  73. Ellis, J.G., Tokuhisa, J.G., Llewellyn, D.J., Bouchez, D., Singh, K., Dennis, E.S.and Peacock, W.J. (1993) Plant J. 4, 433–443.

    Article  PubMed  CAS  Google Scholar 

  74. Lam, E., Benfey, P.N., Gilmartin, P.M., Fang, R.-X. and Chua,N.-H. (1989) Proc.Nat. Acad. Sci. U.S.A. 86, 7890–7894.

    Article  CAS  Google Scholar 

  75. Krawczyk, S., Thurow, C., Niggeweg, R. and Gatz C. (2002) Nucl. Acids Res. 30,775–781.

    Article  PubMed  CAS  Google Scholar 

  76. Sakai, T., Takahashi, Y. and Nagata, T. (1998) Plant Cell Physiol. 39, 731–739.

    Article  PubMed  CAS  Google Scholar 

  77. Niggeweg, R., Thurow, C., Kegler, C. and Gatz, C. (2000) J. Biol. Chem. 275,19897–19905.

    Article  PubMed  CAS  Google Scholar 

  78. Thornton, T.M., Swain, S.M. and Olszewski, N.E. (1999) Trends Plant Sci. 4,424–428.

    Article  PubMed  Google Scholar 

  79. Skriver, K., Olsen, F.L., Rogers, J.C. and Mundy, J. (1991) Proc. Nat. Acad. Sci.U.S.A. 88, 7266–7270.

    Article  CAS  Google Scholar 

  80. Gubler, F., Kalla, R., Roberts, J.K. and Jacobsen J.V. (1995) Plant Cell 7, 1879–1891.

    PubMed  CAS  Google Scholar 

  81. Cercos, M., Gomez-Cadenas, A. and Ho, T.H.D. (1999) Plant J. 19, 107–118.

    Article  PubMed  CAS  Google Scholar 

  82. Tregear, J.W., Primavesi, L.F. and Huttly, A.K. (1995) Plant Mol. Biol. 29, 749–758.

    Article  PubMed  CAS  Google Scholar 

  83. Morita, A., Umemura, T., Kuroyanagi, M., Futsuhara, Y., Perata, P. and Yamaguchi, J. (1998) FEBS Lett. 423, 81–85.

    Article  PubMed  CAS  Google Scholar 

  84. Hattori, T., Terada, T. and Hamasuna, S. (1995) Plant J. 7, 913–925.

    Article  CAS  Google Scholar 

  85. Shen, Q., Zhang, P. and Ho, T.H. (1996) Plant Cell 8, 1107–1119.

    PubMed  CAS  Google Scholar 

  86. Marcotte, W.R., Russell, S.H. and Quatrano, R.S. (1989) Plant Cell 1, 969–976.

    PubMed  CAS  Google Scholar 

  87. McCarty, D.R., Hattori, T., Carson, C.B., Vasil, V., Lazar, M. and Vasil, I.K.(1991) Cell 66, 895–905.

    Article  PubMed  CAS  Google Scholar 

  88. Shen, Q., Gomez-Cadenas, A., Zhang, P., Walker-Simmons, M.K., Sheen, J. and Ho, T.H. (2001) Plant Mol. Biol. 47, 437–448.

    Article  PubMed  CAS  Google Scholar 

  89. Busk, P.K. and Pages, M. (1998) Plant Mol. Biol. 37, 425–435.

    CAS  Google Scholar 

  90. Bleecker, A.B. and Kende, H. (2000) Annu. Rev. Cell Dev. Biol. 16, 1–18.

    Article  PubMed  CAS  Google Scholar 

  91. Zegzouti, H., Jones, B., Frasse, P., Marty, C., Maitre, B., Latch, A., Pech, J.C. and Bouzayen, M. (1999) Plant J. 18, 589–600.

    Article  PubMed  CAS  Google Scholar 

  92. Montgomery, J., Goldman, S., Deikman, J., Margossian, L. and Fischer, R. L.(1993) Proc. Nat. Acad. Sci. U.S.A. 90, 5939–5943.

    Article  CAS  Google Scholar 

  93. Deikman, J. (1997) Physiol. Plant. 100, 561–566.

    Article  CAS  Google Scholar 

  94. Xu, R., Goldman, S., Coupe, S. and Deikman J. (1996) Plant Mol. Biol. 31, 1117–1127.

    Article  PubMed  CAS  Google Scholar 

  95. Coupe, S.A. and Deikman, J. (1997) Plant J. 11, 1207–1218.

    Article  PubMed  CAS  Google Scholar 

  96. Itzhaki, H., Maxson, J.M. and Woodson, W.R. (1994) Proc. Nat. Acad. Sci.U.S.A. 91, 8925–8929.

    Article  CAS  Google Scholar 

  97. Gazzarrini, S. and McCourt, P. (2001) Curr. Opin. Plant Biol. 4, 387–391.

    Article  PubMed  CAS  Google Scholar 

  98. Rolland, F., Moore, B. and Sheen, J. (2002) Plant Cell. Supp l. 185–205.

    Google Scholar 

  99. Hwang, Y.S., Karrer, E.E., Thomas, B.R., Chen, L. and Rodriguez, R.L. (1998) Plant Mol. Biol. 36, 331–341.

    CAS  Google Scholar 

  100. Lu, C.A., Ho, T.H., Ho, S.L. and Yu, S.M. (2002) Plant Cell 14, 1963–1980.

    Article  PubMed  CAS  Google Scholar 

  101. Liu, X.J., Prat, S., Willmitzer, L., and Frommer, W.B. (1990) Mol. Gen. Genet.223, 401–406.

    Article  PubMed  CAS  Google Scholar 

  102. Ishiguro, S. and Nakamura, K. (1994) Mol. Gen. Genet. 28, 563–571.

    Google Scholar 

  103. Grierson, C., Du, J.S., Zabala, M.T., Beggs, K., Smith, C., Holdsworth, M. and Bevan, M. (1994) Plant J. 5, 815–826.

    Article  PubMed  CAS  Google Scholar 

  104. Fu, H., Kim, S.Y. and Park, W.D. (1995) Plant Cell 7, 1387–1394.

    PubMed  CAS  Google Scholar 

  105. Urwin, N.A.R. and Jenkins, G.I. (1997) Plant Mol. Biol. 35, 929–942.

    CAS  Google Scholar 

  106. Sarah, C.J., Graham, I.A., Reynolds, S.J., Leaver, C.J. and Smith, S.M. (1996) Mol. Gen. Genet. 250, 153–161.

    Article  PubMed  CAS  Google Scholar 

  107. Lu, C.A., Lim, E.-K. and Yu, S.-M. (1998) J. Biol. Chem. 273, 10120–10131.

    Article  PubMed  CAS  Google Scholar 

  108. Kim, D.J., Smith, S.M. and Leaver, C.J. (1997) Gene 185, 265–269.

    Article  PubMed  CAS  Google Scholar 

  109. Rushton, P.J., Macdonald, H., Huttly, A.K., Lazarus, C.M. and Hooley, R. (1995) Plant Mol. Biol. 29, 691–702.

    Article  PubMed  CAS  Google Scholar 

  110. Pla, M., Vilardell, J., Guiltinan, M.J., Marcotte, W.R., Niogret, M.F., Quatrano,R.S. and Pages, M. (1993) Plant Mol. Biol. 21, 259–266.

    Article  PubMed  CAS  Google Scholar 

  111. Ohto, M., Nakamura-Kito, K. and Nakamura, K. (1992) Plant Physiol. 99, 422–427.

    Article  PubMed  CAS  Google Scholar 

  112. Bustos, M.M., Iyer, M., and Gagliardi, S.J. (1998) Plant Mol. Biol. 37, 265–274.

    Article  PubMed  CAS  Google Scholar 

  113. Morimoto, R.I. (1998) Genes Dev. 12, 3788–3796.

    Article  PubMed  CAS  Google Scholar 

  114. Nover, L. and Scharf, K.D. (1997) Cell Mol. Life Sci. 53, 80–103.

    Article  CAS  Google Scholar 

  115. Scharf, K.D., Rose, S., Zott, W., Schoffl, F., Nover, L. and Schoff, F. (1990) EMBO J. 9, 4495–4501.

    PubMed  CAS  Google Scholar 

  116. Schoffl, F., Rieping, M., Baumann, G., Bevan, M. and Angermuller, S. (1989) Mol. Gen. Genet. 217, 246–253.

    Article  PubMed  CAS  Google Scholar 

  117. Coca, M.A., Almoguera, C. and Jordano, J. (1994) Plant Mol. Biol. 25, 479–492.

    CAS  Google Scholar 

  118. McDuffee, A.T., Senisterra, G., Huntley, S., Lepock, J.R., Sekhar, K.R., Meredith, M.J., Borrelli, M.J., Morrow, J.D. and Freeman M.L. (1997) J. Cell Physiol. 171, 143–151.

    Article  PubMed  CAS  Google Scholar 

  119. Mittler, R. and Zilinskas, B.A. (1992) J. Biot. Chem. 267, 21802–21807.

    CAS  Google Scholar 

  120. Kubo, A., Saji, H., Tanaka, K. and Kondo, N. (1993) FEBS Lett. 315, 313–317.

    Article  PubMed  CAS  Google Scholar 

  121. Storozhenko, S., De Pauw, P., Van Montagu, M., Inze, D. and Kushnir, S. (1998) Plant Physiol. 118, 1005–1014.

    Article  PubMed  CAS  Google Scholar 

  122. Rieping, M. and Schoffl, F. (1992) Mol. Gen. Genet. 231, 226–232.

    PubMed  CAS  Google Scholar 

  123. Neill, S., Desikan, R. and Hancock, J. (2002) Curr. Opin. Plant Biol. 5, 363–465.

    Article  Google Scholar 

  124. Baxter-Burrell, A., Yang, Z., Springer, P.S. and Bailey-Serres, J. (2002) Science 296, 2026–2028.

    Article  PubMed  CAS  Google Scholar 

  125. Desikan, R., A-H-Mackerness, S., Hancock, J.T. and Neill, S.J. (2001) Plant Physiol. 127, 159–172.

    Article  PubMed  CAS  Google Scholar 

  126. Vranova, E., Inze, D. and Van Breusegem, F. (2002) J. Exp. Bot. 53, 1227–1236.

    Article  PubMed  CAS  Google Scholar 

  127. Larkindale, J. and Knight, M.R. (2002) Plant Physiol. 128, 682–695.

    Article  PubMed  CAS  Google Scholar 

  128. Yamaguchi-Shinozaki, K. and Shinozaki, K. (1994) Plant Cell 6, 251–264.

    PubMed  CAS  Google Scholar 

  129. Baker, S.S., Wilhelm, K.S. and Thomashow, M.F. (1994) Plant Mol. Biol. 24,701–713.

    CAS  Google Scholar 

  130. Stockinger, E.J., Gilmour, S.J. and Thomashow, M.F. (1997) Proc. Nat. Acad.Sci. U.S.A. 94, 1035–1040.

    Article  CAS  Google Scholar 

  131. Jiang, C., Iu, B. and Singh, J. (1996) Plant Mol. Biol. 30, 679–684.

    Article  PubMed  CAS  Google Scholar 

  132. De Bruxelles, G.L., Peacock, W.J., Dennis, E.S. and Dolferus, R. (1996) Plant Physiol. 111, 381–391.

    Article  PubMed  CAS  Google Scholar 

  133. Pla, M., Vilardell, J., Guiltinan, M.J., Marcotte, W.R., Niogret, M.F., Quatrano,R.S. and Pages, M. (1993) Plant Mol. Biol. 21, 259–266.

    CAS  Google Scholar 

  134. Shinozaki, K. and Yamaguchi-Shinozaki, K. (2000) Curr. Opin. Plant Biol. 3,217–223.

    PubMed  CAS  Google Scholar 

  135. Dolferus, R., Klok, E.J., Ismond, K., Delessert, C., Wilson, S., Good, A., Peacock,J. and Dennis, L. (2001) Int. Union Biochem. Mol. Biol. Life 51, 79–82.

    Article  CAS  Google Scholar 

  136. Dolferus, R., Jacobs, M., Peacock, W.J. and Dennis, E.S. (1994) Plant Physiol. 105,1075–1087.

    Article  PubMed  CAS  Google Scholar 

  137. Olive, M.R., Walker, J.C., Singh, K., Dennis, E.S. and Peacock, W.J. (1990) Plant Mol. Biol. 15, 593–604.

    Article  PubMed  CAS  Google Scholar 

  138. Hoeren, F.U., Dolferus, R., Wu, Y., Peacock, W.J. and Dennis, E.S. (1998) Genetics 149, 479–490.

    PubMed  CAS  Google Scholar 

  139. Rushton, P.J. and Somssich, I.E. (1998) Curr. Opin. Plant Biol. 1, 311–315.

    Article  PubMed  CAS  Google Scholar 

  140. Creelman, R.A. and Mullet, J.E. (1997) Annu. Rev. Plant Physiol. Plant Mol.Biol. 48, 355–381.

    Article  PubMed  CAS  Google Scholar 

  141. Blechert, S., Brodschelm, W., Holder, S., Kammerer, L., Kutchan, T.M., Mueller,M.J., Xia, Z.Q. and Zenk, M.H. (1995) Proc. Nat. Acad. Sci. U.S.A. 92, 4099–4105.

    Article  CAS  Google Scholar 

  142. Xu, Y., Chang, P.F.L., Liu, D., Narasimhan, M.L., Raghothama, M.G., Hasegawa,P.M., and Bressan R.A. (1994) Plant Cell 6, 1077–1085.

    PubMed  CAS  Google Scholar 

  143. Vijayan, P., Shockey, J., Levesque, C.A., Cook, R.J. and Browse, J. (1998) Proc.Nat. Acad. Sci. U.S.A. 95, 7209–7214.

    Article  CAS  Google Scholar 

  144. Mason, H.S., DeWald, D.B. and Mullet, J.E. (1993) Plant Cell 5, 241–251.

    PubMed  CAS  Google Scholar 

  145. Rouster, J., Leah, R., Mundy, J. and Cameron-Mills, V. (1997) Plant J. 11, 513–523.

    Article  PubMed  CAS  Google Scholar 

  146. Kim, S.-R., Choi, J.-L., Costa, M.A. and An, G. (1992) Plant Physiol. 99, 627–631.

    Article  PubMed  CAS  Google Scholar 

  147. Xiang, C., Miao, Z.-H. and Lam, E. (1996) Plant Mol. Biol. 32, 415–426.

    Article  PubMed  CAS  Google Scholar 

  148. Menke, F.L., Champion, A., Kijne, J.W. and Memelink, J. (1999) EMBO J. 18,4455–4463.

    Article  PubMed  CAS  Google Scholar 

  149. Ohme-Takagi, M. and Shinshi, H. (1990) Plant Mol. Biol. 15, 941–946.

    Article  PubMed  CAS  Google Scholar 

  150. Ohme-Takagi, M. and Shinshi, H. (1995) Plant Cell 7, 173–182.

    PubMed  CAS  Google Scholar 

  151. Ohta, M., Ohme-Takagi, M. and Shinshi, H. (2000) Plant J. 22, 29–38.

    Article  PubMed  CAS  Google Scholar 

  152. Wu, K., Tian, L., Hollingworth, J., Brown, D.C. and Miki, B. (2002) Plant Physiol. 128, 30–37.

    Article  PubMed  CAS  Google Scholar 

  153. O’Donnell, P.J., Calvert, C., Atzorn, R., Wasternack, C., Leyser, H.M.O. and Bowles, D.J. (1996) Science 274, 1914–1917.

    Article  PubMed  Google Scholar 

  154. Yamamoto, S., Suzuki, K. and Shinshi, H. (1999) Plant J. 20, 571–579.

    Article  PubMed  CAS  Google Scholar 

  155. Maleck, K., Levine, A., Eulgem, T., Morgen, A., Schmid, J., Lawton, K., Dangl, J.L. and Dietrich, R.A. (2000) Nature Genet. 26, 403–410.

    Article  PubMed  CAS  Google Scholar 

  156. Eulgem, T., Rushton, P.J., Robatzek, S. and Somssich, I.E. (2000) Trends Plant Sci. 5,199–206.

    Article  PubMed  CAS  Google Scholar 

  157. Ohtake, Y., Takahashi, T. and Komeda, Y. (2000) Plant Cell Physiol. 41, 1038–1044.

    PubMed  CAS  Google Scholar 

  158. Hara, K., Yagi, M., Kusano, T. and Sano, H. (2000) Mol. Gen. Genet. 263, 30–37.

    Article  PubMed  CAS  Google Scholar 

  159. Romeis, T., Piedras, R., Zhang, S., Klessig, D.F., Hirt, H. and Jones, J.D.G.(1999) Plant Cell 11, 273–287.

    PubMed  CAS  Google Scholar 

  160. Bevan, M., Colot, V., Hammond-Kosack, M., Holdsworth, M., Torres de Zabala, M., Smith, C., Grierson, C. and Beggs, K. (1993) Philos. Trans. Roy. Soc. Lond. Biol. Sci. 342, 209–215.

    CAS  Google Scholar 

  161. Thomas, M.S. (1993) Plant Cell 5, 1401–1410.

    PubMed  CAS  Google Scholar 

  162. Bäumlein, H., Wobus, U., Pustell, J. and Kafatos F.C. (1986) Nucl. Acids Res. 14,2707–2720.

    Article  PubMed  Google Scholar 

  163. Dickinson, C.D., Evans, R.P. and Nielsen, N.C. (1988) Nucl. Acids Res. 16, 183–197.

    Article  Google Scholar 

  164. Lelievre, J.M., Oliveira, L.O. and Nielsen, N.C. (1992) Plant Physiol. 98, 387–391.

    Article  PubMed  CAS  Google Scholar 

  165. Fujiwara, T. and Beachy, B.N. (1994) Plant Mol. Biol. 24, 261–272.

    Article  PubMed  CAS  Google Scholar 

  166. McCarty, D.R. (1995) Annu. Rev. Plant Physiol. Plant Mol. Biol. 46, 71–93.

    Article  CAS  Google Scholar 

  167. Reidt, W., Wohlfarth, T., Ellerström, M., Czihal, A., Tewes, A., Ezcurra, I., Rask,L. and Baumlein, H. (2000) Plant J. 21, 401–408.

    Article  PubMed  CAS  Google Scholar 

  168. Ezcurra, I., Wycliffe, P., Nehlin, L., Ellerström, M. and Rask, L. (2000) Plant J.24, 57–66.

    Article  PubMed  CAS  Google Scholar 

  169. Thompson, G.A. and Larkins, B.A. (1989) Bioassays 10, 108–112.

    Article  CAS  Google Scholar 

  170. Marzabal, P., Busk, P.K., Ludevid, M.D. and Torrent, M. (1998) Plant J. 16, 41–52.

    Article  PubMed  CAS  Google Scholar 

  171. Takaiwa, F., Yamanouchi, U., Yoshihara, T., Washida, H., Tanabe, F., Kato, A.and Yamada, K. (1996) Plant Mol. Biol. 30, 1207–1221.

    CAS  Google Scholar 

  172. Washida, H., Wu, C.Y., Suzuki, A., Yamanouchi, U., Akihama, T., Harada, K.and Takaiwa, F. (1999) Plant Mol. Biol. 40, 1–12.

    CAS  Google Scholar 

  173. Suzuki, A., Wu, C.Y., Washida, H. and Takaiwa, F. (1998) Plant Cell Physiol. 39,555–559.

    Article  PubMed  CAS  Google Scholar 

  174. Vicente-Carbajosa, J., Moose, S.P., Parsons, R.L. and Schmidt, R. (1997) Proc.Nat. Acad. Sci. U.S.A. 94, 7685–7690.

    Article  CAS  Google Scholar 

  175. Albani, D., Hammond-Kosack, M.C., Smith, C., Conlan, S., Colot, V.,Holdsworth, M. and Bevan, M.W. (1997) Plant Cell 9, 171–184.

    PubMed  CAS  Google Scholar 

  176. Wu, C.Y., Suzuki, A., Washida, H. and Takaiwa, F. (1998) Plant J. 14, 673–683.

    Article  PubMed  CAS  Google Scholar 

  177. Wu, C., Washida, H., Onodera, Y., Harada, K. and Takaiwa, F. (2000) Plant J. 23,415–421.

    Article  PubMed  CAS  Google Scholar 

  178. Giovannoni, J. (2001) Annu. Rev. Plant Physiol. Plant Mol. Biol. 52, 725–749.

    Article  PubMed  CAS  Google Scholar 

  179. Atkinson, R.G., Bolitho, K.M., Wright, M.A., Iturriagagoitia-Bueno, T., Reid, S.J.and Ross, G.S. (1998) Plant Mol. Biol. 38, 449–460.

    Article  PubMed  CAS  Google Scholar 

  180. Kuntz, M., Chen, H.C., Simkin, A.J., Romer, S. and Shipton, C.A. (1998) Plant J.13,351–361.

    Article  CAS  Google Scholar 

  181. Yamagata, H., Yonesu, K., Hirata, A. and Aizono, Y. (2002) J. Biol. Chem. 277,11582–11590.

    Article  PubMed  CAS  Google Scholar 

  182. Nicholass, F.J., Smith Christopher, J.S., Schuch, W., Bird, C.R. and Grierson, D.(1995) Plant Mol. Biol. 28, 423–435.

    Article  PubMed  CAS  Google Scholar 

  183. Deikman, J., Xu, R., Kneissl, M.L., Ciardi, J.A., Kim, K.N. and Pelah, D. (1998) Plant Mol. Biol. 37, 1001–1011.

    CAS  Google Scholar 

  184. Van Haaren, M.J.J. and Houck, C.M. (1993) Plant Mol. Biol. 21, 625–640.

    Google Scholar 

  185. Mehta, R.A., Cassol, T., Li, N., Ali, N., Handa, A.K. and Mattoo, A.K. (2002) Nature Biotech. 20, 613–618.

    Article  CAS  Google Scholar 

  186. Daniell, H., Streatfield, S. J. and Wycoff, K. (2001) Trends Plant Sci. 6, 219–226.

    Article  PubMed  CAS  Google Scholar 

  187. Taylor, L.P. and Hepler, P.K. (1997) Annu. Rev. Plant Physiol. Plant Mol. Biol.48, 461–491.

    Article  PubMed  CAS  Google Scholar 

  188. Bate, N. and Twell, D. (1998) Plant Mol. Biol. 37, 859–869.

    CAS  Google Scholar 

  189. Hamilton, D.A., Schwarz, Y.H. and Mascarenhas, J.P. (1998) Plant Mol. Biol. 38,663–669.

    Article  PubMed  CAS  Google Scholar 

  190. Eyal, Y., Curie, C. and McCormick, S. (1995) Plant Cell. 7, 373–384.

    PubMed  CAS  Google Scholar 

  191. Twell, D., Yamaguchi, J., Wing, R.A., Ushiba, J. and McCormick, S. (1991) Genes Dev. 5, 496–507.

    Article  PubMed  CAS  Google Scholar 

  192. Weterings, K., Schrauwen, J., Wullems, G. and Twell, D. (1995) Plant J. 8, 55–63.

    Article  PubMed  CAS  Google Scholar 

  193. Zabaleta, E., Heiser, V., Grohmann, L. and Brennicke, A. (1998) Plant J. 15, 49–59.

    Article  PubMed  CAS  Google Scholar 

  194. Kim, H.U., Park, B.S., Jin, Y.M. and Chung, T.Y. (1997) Mol. Cells 7, 21–27.

    PubMed  CAS  Google Scholar 

  195. Eady, C., Lindsey, K. and Twell, D. (1994) Plant J. 5, 543–550.

    Article  CAS  Google Scholar 

  196. Xu, H., Davies, S.P., Kwan, B.Y.H., O’Brien, A.P., Singh, M. and Knox, R.B.(1993) Mol. Gen. Genet. 239, 58–65.

    PubMed  CAS  Google Scholar 

  197. Guerrero, F.D., Crossland, L., Smutzer, G.S., Hamilton, D.A. and Mascarenhas,J.P. (1990) Mol. Gen. Genet. 224, 161–168.

    Article  PubMed  CAS  Google Scholar 

  198. Zachgo, S., Saedler, H. and Schwarz-Sommer, Z. (1997) Plant J. 11, 1043–1050.

    Article  PubMed  CAS  Google Scholar 

  199. Kobayashi, A., Sakamoto, A., Kubo, K., Rybka, Z., Kanno, Y. and Takatsuji, H.(1998) Plant J. 13, 571–576.

    Article  PubMed  CAS  Google Scholar 

  200. Sweetman, J., Spurr, C., Eliasson, A., Gass, N., Steinmetz, A. and Twell, D. (2000)Sex. Plant Reprod. 12, 339–345.

    Article  CAS  Google Scholar 

  201. Heuer, S., Lorz, H. and Dresselhaus, T. (2000) Sex. Plant Reprod. 13, 21–27.

    Article  CAS  Google Scholar 

  202. Yang, S., Sweetman, J.P., Amirsadeghi, S., Barghchi, M., Huttly, A.K., Chung,W.I. and Twell, D. (2001) Plant Physiol. 126, 1738–1753.

    Article  PubMed  CAS  Google Scholar 

  203. Banerji, J., Rusconi, S. and Schaffner, W. (1981) Cell 27, 299–308.

    Article  PubMed  CAS  Google Scholar 

  204. Herr, W. (1993) Semin. Virol. 4, 3–13.

    Article  CAS  Google Scholar 

  205. Dean, C., Favreau, M., Bond-Nutter, D., Bedbrook, J. and Dunsmuir, P. (1989) Plant Cell 1, 201–208.

    PubMed  CAS  Google Scholar 

  206. Bustos, M.M., Guiltinan, M.J., Jordano, J., Begum, D., Kalkan, F.A. and Hall,T.C. (1989) Plant Cell 1, 839–853.

    PubMed  CAS  Google Scholar 

  207. Czarnecka, E., Ingersoll, J.C. and Gurley, W.B. (1992) Plant Mol. Biol. 19, 985–1000.

    Article  PubMed  CAS  Google Scholar 

  208. Sandhu, J.S., Webster, C.I. and Gray, J.C. (1998) Plant Mol. Biol. 37, 885–896.

    Article  PubMed  CAS  Google Scholar 

  209. Roberge, M. and Gasser, S.M. (1992) Mol. Microbiol. 6, 419–423.

    Article  PubMed  CAS  Google Scholar 

  210. Gasser, S.M. and Laemmli, U.K. (1986) Cell 46, 521–530.

    Article  PubMed  CAS  Google Scholar 

  211. Koo, H.S., Wu, H.M. and Crothers, D.M. (1986) Nature 320, 501–506.

    Article  PubMed  CAS  Google Scholar 

  212. Amati, B., Pick, L., Laroche, T. and Gasser, S.M. (1990) EMBO J. 9, 4007–4016.

    PubMed  CAS  Google Scholar 

  213. Bode, J., Kohwi, Y., Dickinson, L., Joh, T., Klehr, D., Mielke, C. and Kohwi-Shigematsu, T. (1992) Science 255, 195–197.

    Article  PubMed  CAS  Google Scholar 

  214. Slatter, R.E., Dupree, P. and Gray, J.C. (1991) Plant Cell 3, 1239–1250.

    PubMed  CAS  Google Scholar 

  215. Snyder, M., Buchman, A.R. and Davis, R.W. (1986) Nature 324, 87–89.

    Article  PubMed  CAS  Google Scholar 

  216. Sander, M. and Hsieh, T.S. (1985) Nucl. Acids Res. 13, 1057–1072.

    Article  PubMed  CAS  Google Scholar 

  217. Kohwi-Shigematsu, T. and Kohwi, Y. (1990) Biochemistry 29, 9551–9560.

    Article  PubMed  CAS  Google Scholar 

  218. Van Houten, J.V. and Newlon, C.S. (1990) Mol. Cell Biol. 10, 3917–3925.

    PubMed  Google Scholar 

  219. Hall, G.Jr., Allen, G.C., Loer, D.S., Thompson, W.F. and Spiker, S. (1991) Proc.Nat. Acad. Sci. U.S.A. 88, 9320–9324.

    Article  CAS  Google Scholar 

  220. Avramova, Z., SanMiguel, P., Georgieva, E. and Bennetzen, J.L. (1995) Plant Cell 7, 1667–1680.

    PubMed  CAS  Google Scholar 

  221. Allen, G.C., Hall, G.Jr., Michalowski, S., Newman, W., Spiker, S., Weissinger,A.K. and Thompson, W.F. (1996) Plant Cell 8, 899–913.

    PubMed  CAS  Google Scholar 

  222. Vain, P., Worland, B., Kohli, A., Snape, J.W., Christou, P., Allen, G.C. and Thompson, W.F. (1999) Plant J. 18, 233–242.

    Article  CAS  Google Scholar 

  223. Allen, G.C., Spiker, S. and Thompson, W.F. (2000) Plant Mol. Biol. 43, 361–376.

    Article  PubMed  CAS  Google Scholar 

  224. Hernandez, P., Bjerknes, C.A., Lamm, S.S. and van’t Hof, J. (1988) Plant Mol.Biol. 10, 413–422.

    Article  CAS  Google Scholar 

  225. Brun, C., Surdej, P. and Miassod, R. (1993) Exp. Cell Res. 208, 104–114.

    Article  PubMed  CAS  Google Scholar 

  226. Borisjuk, N., Borisjuk, L., Komarnytsky, S., Timeva, S., Hemleben, V., Gleba, Y.and Raskin, I. (2000) Nature Biotechnol. 18, 1303–1306.

    Article  CAS  Google Scholar 

  227. Schlogelhofer, P., Nizhynska, V., Feik, N., Chambon, C., Potuschak, T., Wanzenbock, E.M., Schweizer, D. and Bachmair, A. (2002) Plant Mol. Biol. 49, 655–667.

    Article  PubMed  Google Scholar 

  228. Singh, K.B. (1998) Plant Physiol. 118, 1111–1120.

    Article  PubMed  CAS  Google Scholar 

  229. Willy, P.J., Kobayashi, R. and Kadonaga, J.T. (2000) Science 290, 982–985.

    Article  PubMed  CAS  Google Scholar 

  230. Butler, J.E. and Kadonaga, J.T. (2001) Genes Dev. 15, 2515–2519.

    Article  PubMed  CAS  Google Scholar 

  231. Li, Y., Dubois, F. and Zhou, D. (2001) FEBS Lett. 489, 187–191.

    Article  PubMed  CAS  Google Scholar 

  232. Finnegan, E.J. (2001) Trends Genet. 17, 361–365.

    Article  PubMed  CAS  Google Scholar 

  233. Carey, M. (1998) Cell 92, 5–8.

    Article  PubMed  CAS  Google Scholar 

  234. Sugiura, M. (1997) Annu. Rev. Plant Physiol. Plant Mol. Biol. 48, 383–398.

    Article  PubMed  CAS  Google Scholar 

  235. Zhu, Q., Ordiz, M.I., Dabia, T., Beachy, R.N. and Lamb, C. (2002) Plant Cell 14,795–803.

    Article  PubMed  CAS  Google Scholar 

  236. Ishige, F., Takaichi, M., Foster, R., Chua, N.-H. and Oeda, K. (1999) Plant J. 18,443–448.

    Article  CAS  Google Scholar 

  237. Kusnadi, A.R., Hood, E.E., Witcher, D.R., Howard,.JA. and Nikolov, Z.L. (1998) Biotechnol. Prog. 14, 149–155.

    Article  PubMed  CAS  Google Scholar 

  238. Komarnytsky, S., Borisjuk, N.V., Borisjuk, L.G., Alam, M.Z. and Raskin, I.(2000) Plant Physiol. 124, 927–934.

    Article  PubMed  CAS  Google Scholar 

  239. Borisjuk, N.V., Borisjuk, L.G., Logendra, S., Petersen, F., Gleba, Y. and Raskin,1. (1999) Nature Biotechnol. 17, 466–469.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Biotech Center, Cook College, Rutgers University, 59 Dudley Rd., New Brunswick, NJ, 08901-8520, USA

    Slavko Komarnytsky & Nikolai Borisjuk

Authors
  1. Slavko Komarnytsky
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Nikolai Borisjuk
    View author publications

    You can also search for this author in PubMed Google Scholar

Editor information

Editors and Affiliations

  1. Brookhaven National Laboratory, Upton, New York, USA

    Jane K. Setlow

Rights and permissions

Reprints and permissions

Copyright information

© 2003 Springer Science+Business Media New York

About this chapter

Cite this chapter

Komarnytsky, S., Borisjuk, N. (2003). Functional Analysis of Promoter Elements in Plants. In: Setlow, J.K. (eds) Genetic Engineering. Genetic Engineering: Principles and Methods, vol 25. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-0073-5_6

Download citation

  • DOI: https://doi.org/10.1007/978-1-4615-0073-5_6

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-1-4613-4911-2

  • Online ISBN: 978-1-4615-0073-5

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics

Search

Navigation