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The Bayesian approach to Population pharmacokinetic/pharmacodynamic modeling

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Book cover Case Studies in Bayesian Statistics

Part of the book series: Lecture Notes in Statistics ((LNS,volume 140))

Abstract

It is one of the principal aims of drug development to discover, for a particular agent, the relationship between dose administered, drug concentrations in the body and efficacy/toxicity. Understanding this relationship leads to the determination of doses which are both effective and safe. Population pharmacokinetic/pharmacodynamic models provide an important aid to this understanding.

Pharmacokinetics considers the absorption, distribution and elimination over time of a drug and its metabolites. Pharmacokinetic data consist of drug concentrations along with (typically) known sampling times and known dosage regimens. A dosage regimen is defined by a route of administration and the sizes and timings of the doses. Pharmacodynamics considers the action of a drug on the body. Pharmacodynamic data consist of a response measure, for example blood pressure, a pain score or a clotting time, and a known dosage regimen. Population data arise when these quantities are measured on a group of individuals, along with subject-specific characteristics (covariates) such as age, sex or the level of a biological marker. When identical doses are administered to a group of individuals large between-individual variability in responses is frequently observed. The mechanisms which cause this variability are complex and include between-individual differences in both pharmacokinetic and pharmacodynamic parameters. The general aim of population studies then is to isolate and quantify the within-and between-individual sources of variability. The explanation of between-individual sources of variability in terms of known covariates is important as it has implications for the determination of dosage regimens for particular covariate-defined subpopulations.

In this chapter we describe the drug development process from a population pharmacokinetic/pharmacodynamic perspective. In particular we describe how the nature of the statistical analysis and the models that are used are modified as the type of data and the aims of the study change through the various phases of development. The Bayesian approach to population modeling is particularly appealing from a biological perspective as it allows informative prior distributions to be incorporated. These priors may arise from previous studies and/or from medical/biological considera-tions. From an estimation standpoint a Bayesian approach is preferable because of the difficulties which a classical approach encounters due to the large numbers of parameters, the nonlinearity of the subject-specific models which are typically used and the large numbers of variance parameters.

We illustrate the population approach to drug development by describing a number of studies which were carried out by Ciba for a particular anti-clotting agent. We also present a detailed analysis for one of the studies.

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References

  • Aarons, L., Balant, L.P., Mentré, F., Morselli, P.L., Rowland, M., Steimer, J.-L. and Vozeh, S. (1996). Practical experience and issues in designing and performing population pharmacokinetic/pharmacodynamic studiesEur. J. Clin. Pharmacol., 49, 251–254.

    Article  Google Scholar 

  • Abernathy, D.R. and Azarnoff, D.L. (1990). Pharmacokinetic investigations in elderly patients. Clinical and ethical considerations. Clin. Pharmacokinet., 19, 89–93.

    Article  Google Scholar 

  • Beal, S.L. and Sheiner, L.B. (1982). Estimating population kinetics. CRC Critical Reviews in Biomedical Engineering, 8, 195–222.

    Google Scholar 

  • Beal, S.L. and Sheiner, L.B. (1993). NONMEM User’s Guide, University of California, San Fransisco.

    Google Scholar 

  • Bennett, J.E., Racine-Poon, A. and Wakefield, J.C. (1996). MCMC for nonlinear hierarchical models. InMarkov Chain Monte Carlo Methods in Practice, (eds. W.R. Gilks, S. Richardson and D.J. Spiegelhalter), 339–357. London: Chapman and Hall.

    Google Scholar 

  • Berry, D.A. (1990). Basic principles in designing and analyzing clinical studies. InStatistical Methodology in the Pharmaceutical Sciences, (ed. D.A. Berry), 1–55. Marcel-Dekker, Inc. New York and Basel.

    Google Scholar 

  • Carroll, R.J., Ruppert, D. and Stefanski, L.A. (1995). Measurement Error in Nonlinear Models., Chapman and Hall, London.

    MATH  Google Scholar 

  • Colburn, W.A. (1989). Controversy IV: population pharmacokinetics, NONMEM and the pharmacokinetic screen; academic, industrial and regulatory perspectives. J. Clin.Pharmacol., 29, 1–6.

    Google Scholar 

  • Davidian, M. and Gallant, A.R. (1993). The non-linear mixed effects model with a smooth random effects density. Biometrika, 80, 475–88.

    Article  MathSciNet  MATH  Google Scholar 

  • Davidian, M. and Giltinan, D.M. (1993). Some simple estimation methods for investigating intra-individual variability in nonlinear mixed effects models. Biometrics, 49, 59–73.

    Article  Google Scholar 

  • Davidian, M. and Giltinan, D.M. (1995). Nonlinear Models for Repeated Measurement Data., Chapman and Hall, London.

    Google Scholar 

  • Eriksson, B.I., Kalebo, P., Zachrisson, B., Ekman, S., Kerry, R. and Close, P. (1996). Prevention of deep vein thrombosis with recombinant hirudin CGP 39393 in hip prosthesis surgery. Evaluation of three dose levels of recombinant hirudin in comparison with unfractionated heparin. Lancet, 347, 635–39.

    Article  Google Scholar 

  • Eriksson, B.I., Ekman, S., Lindbratt, S., Baur, M., Torholm, C., Kalebo, P. and Close, P. (1997a). Prevention of deep vein thrombosis with recombinant hirudin — results of a double-blind multicenter trial comparing the efficacy of desirudin (Revasc) with that of unfractionated heparin in patients having a total hip replacement. J. Bone J. Surg. (Am), 79A, 326–33.

    Google Scholar 

  • Eriksson, B.I., Wille-Jorgensen, P., Kalebo, P., Mouret, P., Rosencher, N., Bosch, P., Baur, M., Ekman, S., Bach, D., Lindbratt, S. and Close, P. (1997b). Recombinant hirudin, desirudin, is more effective than a low-molecularweight heparin, enoxaparin, as prophylaxis of major thromboembolic complications after primary total hip replacement. To appear in New England Medical Journal.

    Google Scholar 

  • Food and Drug Administration (1989). Guideline for the study of drugs likely to be used in the elderly. Washington, DC.

    Google Scholar 

  • Gelman, A., Bois, F.Y. and Jiang, J. (1996). Physiological pharmacokinetic analysis using population modeling and informative prior distributions. Journal of the American Statistical Association, 91, 1400–12.

    Article  MATH  Google Scholar 

  • Gibaldi, M. and Perrier, D. (1982). Drugs and the Pharmaceutical Sciences, Volume 15 Pharmacokinetics, Second Edition., Marcel Dekker.

    Google Scholar 

  • Gilks, W.R., Best, N.G. and Tan, K.K.C. (1995). Adaptive rejection Metropolis sampling within Gibbs sampling. Appl. Statist., 44, 455–472.

    Article  MATH  Google Scholar 

  • Gilks, W.R., Neal, R.M., Best, N.G. and Tan, K.K.C. (1997). Corrigendum to `Adaptive rejection metropolis sampling within Gibbs sampling’. Applied Statistics, 46, 541–2.

    Google Scholar 

  • Godfrey, K.R. (1983). Compartmental Models and their Applications., London, Academic Press.

    Google Scholar 

  • Hastings, W. (1970). Monte Carlo sampling-based methods using Markov chains and their applications. Biometrika, 57, 97–109.

    Article  MATH  Google Scholar 

  • Hodges, J.S. (1998). Some algebra geometry for hierarchical models, applied to diagnostics. Journal of the Royal Statistical Society, Series B, 60, 497–536.

    Article  MathSciNet  MATH  Google Scholar 

  • Holford, N.H.G. and Sheiner, L.B. (1981). Understanding the dose-effect relationship: Clinical application of pharmacokinetic-pharmacodynamic models. Clinical Pharmacokinetics, 6, 429–453.

    Article  Google Scholar 

  • Lange, N. and Ryan, L. (1989). Assessing normality in random effects model. Annals of Statistics, 17, 624–642.

    Article  MathSciNet  MATH  Google Scholar 

  • Lindstrom, M. and Bates, D. (1990). Nonlinear mixed effects model for repeated measures data. Biometrics, 46, 673–87.

    Article  MathSciNet  Google Scholar 

  • Maitre, P., Buhrer, M., Thomson, D., and Stanski, D. (1991). A three-step approach to combining Bayesian regression and NONMEM population analysis. Journal of Pharmacokinetics and Biopharmaceutics, 19, 377–84.

    Google Scholar 

  • Mallet, A. (1986). A maximum likelihood estimation method for coefficient regression models. Biometrika, 73, 645–656.

    Article  MathSciNet  MATH  Google Scholar 

  • Mentré, F. and Mallet, A. (1994). Handling covariates in population pharmacoki-netics, International Journal of Bio-Medical Computing, 36, 25–33.

    Article  Google Scholar 

  • Metropolis, N., Rosenbluth, A., Rosenbluth, M., Teller, A., and Teller, E. (1953). Equations of state calculations by fast computing machines. J. Chemical Physics, 21, 1087–91.

    Article  Google Scholar 

  • Miller, A.J. (1990). Subset Selection in Regression, Chapman and Hall, London.

    MATH  Google Scholar 

  • Muller, P. and Rosner, G.L. (1997). A Bayesian population model with hierarchical mixture priors applied to blood count data. Journal of the American Statistical Association, 92, 1279–92.

    Google Scholar 

  • Pinheiro, J. and Bates, D. (1995). Approximations to the loglikelihood function in the nonlinear mixed effects model. Computational and Graphical Statistics, 4, 12–35.

    Google Scholar 

  • Pitsiu, M., Parker, E.M., Aarons, L. and Rowland, M. (1993). Population pharmacokinetics and pharmacodynamics of warfarin in healthy young adults, Eur.J.Pharm.Sci., 1, 151–157.

    Article  Google Scholar 

  • Racine-Poon, A. (1985). A Bayesian approach to nonlinear random effects models. Biometrics, 41, 1015–1024.

    Article  MathSciNet  MATH  Google Scholar 

  • Racine-Poon, A. and Wakefield, J.C. (1996). Bayesian analysis of population pharmacokinetic and instantaneous pharmacodynamic relationships. InBayesian Biostatistics, (ed. D. Berry and D. Stangl). Marcel-Dekker.

    Google Scholar 

  • Racine-Poon, A. and Wakefield, J.C. (1998). Statistical methods for population pharmacokinetic modelling. Statistical Methods in Medical Research, 7, 63–84.

    Article  Google Scholar 

  • Rowland, M. and Tozer, T.N. (1995). Clinical Pharmacokinetics: Concepts and Applications, Third Edition., Williams and Wilkins.

    Google Scholar 

  • Sheiner, L.B., Beal, S.L. and Dunne, A. (1997). Analysis of non-randomly censored ordered categorical longitudinal data from analgesic trials (with discussion). Journal of the American Statistical Association, 92, 1235–55.

    Article  MATH  Google Scholar 

  • Sheiner, L.B. and Benet, L.Z. (1985). Premarketing observational studies of population pharmacokinetics of new drugs. Clin.Pharmacol.Ther., 38, 481–487.

    Article  Google Scholar 

  • Smith, A. and Roberts, G. (1993). Bayesian computation via the Gibbs sampler and related Markov chain Monte Carlo methods. J Roy Statist Soc, Series B, 55, 3–23.

    MathSciNet  MATH  Google Scholar 

  • Steimer, J., Vozeh, S., Racine-Poon, A., Holford, N., and O’Neill, R. (1994). The population approach: rationale, methods and applications in clinical pharmacology and drug development. In Handbook of experimental pharmacology, (eds. P. Welling and H. Balant). Springer Verlag.

    Google Scholar 

  • Temple, R. (1983). Discussion paper on the testing of drugs in the elderly. Washington, DC: Memorandum of the Food and Drug Administration of Department of Health and Human Service.

    Google Scholar 

  • Temple, R. (1985). Food and Drug Administration’s guidelines for clinical testing of drugs in the elderly. Drug Information Journal, 19, 483–486.

    Google Scholar 

  • Temple, R. (1989). Dose-response and registration of new drugs. In Dose-response relationships in Clinical Pharmacology., Eds. Lasagne, L., Emill, S. and Naranjo, C.A. Amsterdam, Elsevier, pl45–167.

    Google Scholar 

  • Verstraete, M., Nurmohamed, M., Kienast, J. et al, (1993). Biological effects of recombinant hirudin (GP 39393) in human volunteers. J. Amer. Coll. Cardiol., ,22, 1080–1088.

    Article  Google Scholar 

  • Vonesh, E.F. and Chinchilla, V.M. (1997) Linear and Nonlinear Models for the Analysis of Repeated Measurements. New York, Dekker.

    MATH  Google Scholar 

  • Vozeh, S. and Steimer, J.J. (1985). Feedback control methods for drug dosage optimization: concepts, classifications and clinical applications. Clinical Pharmacokinetics, 10, 457–476.

    Article  Google Scholar 

  • Wakefield, J.C. (1994). An expected loss approach to the design of dosage regimens via sampling-based methods. The Statistician, 43, 13–29.

    Article  Google Scholar 

  • Wakefield, J.C. (1996a). The Bayesian analysis of population pharmacokinetic models. J. Amer. Statist. Assoc., 91, 62–75.

    Article  MATH  Google Scholar 

  • Wakefield, J.O. (1996b). Bayesian individualization via sampling based methods. Journal of Pharmacokinetics and Biopharmaceutics, 24, 103–31.

    Google Scholar 

  • Wakefield, J.C. and Bennett, J.E. (1996). The Bayesian modeling of covariates for population pharmacokinetic models. Journal of the American Statistical Association, 91, 917–927.

    Article  MATH  Google Scholar 

  • Wakefield, J.C., Gelfand, A.E. and Smith, A.F.M. (1991). Efficient generation of random variates via the ratio-of-uniform method. Statist. Comput., 1, 129–133.

    Article  Google Scholar 

  • Wakefield, J.C. and Racine-Poon, A. (1995). An application of Bayesian population pharmacokinetic/pharmacodynamic models to dose recommendation. Statistics in Medicine, 14, 971–86.

    Article  Google Scholar 

  • Wakefield, J.C., Smith, A.F.M., Racine-Poon, A. and Gelfand, A.E. (1994). Bayesian analysis of linear and non-linear population models using the Gibbs sampler. Appl. Statist., 43, 201–221.

    Article  MATH  Google Scholar 

  • Wakefield, J.C. and Walker, S.G. (1997). Bayesian nonparametric population model: formulation and comparison with likelihood approaches. Journal of Pharmacokinetics and Biopharmaceutics, 25, 235–53.

    Google Scholar 

  • Walker, S.G. and Wakefield, J.C. (1998). Population models with a nonparametric random coefficient distribution. To appear inSankhya, Series B

    Google Scholar 

  • Wang, N. and Davidian, M. (1996). A note on covariate measurement error in nonlinear mixed effects models. Biometrika, 83, 801–812.

    Article  MathSciNet  MATH  Google Scholar 

  • Yuh, L., Beal, S., Davidian, M., Harrison, F., Hester, A., Kowalski, K., Vonesh, E., and Wolfinger, R. (1994). Population pharmacokinetic/ph-armacodynamic methodology and applications: a bibliography. Biometrics, 50, 566–675.

    Article  MATH  Google Scholar 

References

  • Beal, S.L. and Sheiner, L.B. (1993). NONMEM User’s Guide, University of California, San Francisco.

    Google Scholar 

  • Davidian, M. and Gallant, A.R. (1993). The nonlinear mixed effects model with a smooth random effects densityBiometrika, 80, 475–488.

    Article  MathSciNet  MATH  Google Scholar 

Additonal References

  • Bennett, J.E., Wakefield, J.C. and Lacey, L.F. (1997). Modeling of trough plasma bismuth concentrations. Journal of Pharmacokinetics and Biopharmaceutics, 25, 79–106.

    Google Scholar 

  • Bennett, J.E. and Wakefield, J.C. (1998). Errors-in-variables in joint PIC/PD modeling. Manuscript under preparation

    Google Scholar 

  • Evans, W.E., Taylor, R.H., Feldman, S. Crom, W.R., Rivera, G., Yee, G.C. (1980). A model for dosing gentamicin in children and adolescents that adjusts for tissue accumulation with continuous dosingClinical Pharmacokinetics, 5, 295–306.

    Article  Google Scholar 

  • Spiegelhalter, D.J., Thomas, A., Best, N.G. and Gilks, W.R. (1994). BUGS: Bayesian Inference Using Gibbs Sampling, Version 3.0., Cambridge: Medical Research Council Biostatistics Unit.

    Google Scholar 

  • Wakefield, J.C. and Rahman, N.J. The combination of population pharmacokinetic studies. Submitted for publication

    Google Scholar 

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Wakefield, J., Aarons, L., Racine-Poon, A. (1999). The Bayesian approach to Population pharmacokinetic/pharmacodynamic modeling. In: Gatsonis, C., et al. Case Studies in Bayesian Statistics. Lecture Notes in Statistics, vol 140. Springer, New York, NY. https://doi.org/10.1007/978-1-4612-1502-8_4

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  • DOI: https://doi.org/10.1007/978-1-4612-1502-8_4

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