Abstract
The polymerase chain reaction (PCR) is an enzymatic process that allows the generation of millions of identical DNA molecules in vitro in a few hours, starting with as little as one copy of DNA (Mullis et al., 1986; Mullis and Faloona, 1987; Saiki et al., 1988). In contrast to conventional cloning, this in vitro amplification process is quick, efficient, and can easily be automated. In addition to its enormous potential for clinical diagnosis PCR has found numerous applications in all fields of biology and medicine (Innis et al., 1990; Erlich, 1989; Erlich etal., 1991).
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References
Arveiler B, Porteous DJ (1991): Amplification of end fragments of YAC recombinants by inverse-polymerase chain reaction. Technique 3:24–28.
Borson ND, Salo WL, Drewes LR (1992): A lock-docking oligo(dT) primer for 5′ and 3′ RACE PCR. PCR Methods Applic 2:144–148.
Charnock-Jones DS, Platzer M, Rosenthal A (1993): Extension of incomplete cDNAs (EST’s) by biotin/streptavidin mediated walking using the polymerase chain reaction. J Biotechnol, in press.
Copley CG, Boot C, Bundell K, McPheat WL (1991): Unknown sequence amplification: Application to in vitro genome walking in Chlamydia trachomatis L2. Bio/Technology 9:74–79.
Dumas JB, Edwards M, Delort J, Mallet J (1991): Oligodeoxyribonucleotide ligation to single-stranded cDNA’s: A new tool for cloning 5′ ends of mRNA and for constructing cDNA libraries by in vitro amplification. Nucl Acids Res 19:5227–5232.
Earp DJ, Lowe B, Baker B (1990): Amplification of genomic sequences flanking transposable elements in host and heterologous plants: A tool for transposon tagging and genome characterization. Nucl Acids Res 18:3271–3279.
Erlich HA (ed) (1989): PCR Technology — Principles and Applications for DNA Amplification. New York: Stockton Press.
Erlich HA, Gelfand D, Sninsky JJ (1991): Recent advantages in the polymerase chain reaction. Science 252:1643–1651.
Espelund M, Jakobsen KS (1992): Cloning and direct sequencing of plant promotors using primer-adapter mediated PCR on DNA coupled to a magnetic solid phase. BioTechniques 13:74–81.
Fors L, Saavedra RA, Hood L (1990): Cloning of the shark Po promotor using a genomic walking technique based on the polymerase chain reaction. Nucl Acids Res 18:2793–2799.
Fritz JD, Greaser ML, Wolff JA (1991): A novel 3′ extension technique using random primers in RNA-PCR. Nucl Acids Res 19:3747.
Frohman MA (1990): RACE: Rapid amplification of cDNA ends. In: PCR Protocols — A Guide to Methods and Applications. Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. San Diego: Academic Press.
Frohman MA, Dush MK, Martin GR (1988): Rapid production of full-length cDNA from rare transcripts: Amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci USA 85:8998–9002.
Garrity PA, Wold BJ (1992): Effects of different DNA polymerases in ligation-mediated PCR: Enhanced genomic sequencing and in vivo footprinting. Proc Natl Acad Sci USA 89:1021–1025.
Huckaby CS, Kouri RE, Lane MJ, Peshick SM, Carroll WT, Henderson SM, Faldasz BD, Waterbury PG, Vournakis JN (1991): An efficient technique for obtaining sequences flanking inserted retroviruses. GATA 8:151–158.
Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) (1990): PCR Protocols — A Guide to Methods and Applications. San Diego: Academic Press.
Jain R, Gomer RH, Murtagh JJ (1992): Increasing specificity from PCR-RACE technique. BioTechniques 12:58–59.
Jones D, Winistorfer SC (1992): Sequence specific generation of a DNA panhandle permits PCR amplification of unknown flanking DNA. Nucl Acids Res 20:595–600.
Jones DH, Winistorfer SC (1993): Genome walking with 2- to 4-kb steps using panhandle PCR. PCR Methods Applic 2:197–203.
Kalman M, Kalman ET, Cashel M (1990): Polymerase chain reaction (PCR) amplification with a single specific primer. Biochem Biophys Res Commun 167:504–506.
Lagerström M, Parik J, Malmgren H, Stewart J, Petterson U, Landegren U (1991): Capture PCR: Efficient amplification of DNA fragments adjacent to known sequences in human and YAC DNA. PCR Methods Applic 1:111–119.
Mueller PR, Wold B (1989): In vivo footprinting of a muscle specific enhancer by ligation mediated PCR. Science 246:780–786.
Mueller PR, Wold B (1991): Ligation-mediated PCR: Applications to genomic footprinting. Methods: Companion Methods Enzymol 2:20–31.
Mullis KB, Faloona FA (1987): Specific synthesis of DNA in vitro via a polymerase catalyzed chain reaction. Methods Enzymol 155:335–350.
Mullis KB, Faloona FA, Scharf SJ, Saiki RK, Horn GT, Erlich HA (1986): Specific enzymatic amplification of DNA in vitro: The polymerase chain reaction. Cold Spring Harbor Symp Quant Biol 51:263–273.
Ochman H, Gerber AS, Hartl DL (1988): Genetic applications of an inverse polymerase chain reaction. Genetics 120:621–623.
Ochman H, Medhora MM, Garza D, Hartl DL (1990): Amplifications of flanking sequences by inverse PCR. In: PCR Protocols — A Guide to Methods and Applications. Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. San Diego: Academic Press.
Palittapongarnpim P, Chomyc S, Fanning A, Kunimoto D (1993): DNA fingerprinting of Mycobacterium tuberculosis isolates by ligation-mediated polymerase chain reaction. Nucl Acids Res 21: 761–762.
Pfeifer GP (1992): Analysis of chromatin structure by ligation-mediated PCR. PCR Methods Applic 2:107–111.
Pfeifer GP, Steigerwald SD, Mueller PR, Wold B, Riggs AD (1989): Genomic sequencing and methylation analysis by ligation mediated PCR. Science 246:810–813.
Riley J, Butler R, Ogilvie D, Finniear R, Jenner D, Powell S, Anand R, Smith JC, Markham AF (1990): A novel, rapid method for the isolation of terminal sequence from yeast artificial chromosome (YAC) clones. Nucl Acids Res 18:2887–2890.
Rosenthal A (1992): PCR amplification techniques for chromosome walking. Trends Biotechnol 10:44–48.
Rosenthal A, Jones DSC (1990): Genomic walking and sequencing by oligo-cassette mediated polymerase chain reaction. Nucl Acids Res 18:3095–3096.
Rosenthal A, MacKinnon RN, Jones DSC (1991): PCR walking from microdissection clone M54 identifies three exons from the human gene for the neural cell adhesion molecule LI (CAM-LI). Nucl Acids Res 19:5395–5401.
Rosenthal A, Charnock-Jones DS (1992): New protocols for DNA sequencing with dye terminators. DNA Sequence — DNA Sequencing Mapping 3:61–64.
Rosenthal A, Coutelle O, Craxton M (1993): Large-scale production of DNA sequencing templates by microtitre format PCR. Nucl Acids Res 21: 173–174.
Roux KH, Dhanarajan P (1990): A strategy for single site PCR amplification of ds DNA: Priming digested cloned or genomic DNA from an anchor-modified restriction site and a short internal sequence. BioTechniques 8:48–57.
Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA (1988): Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487–491.
Sarkar G, Turner RT, Bolander ME (1993): Restriction-site PCR: A direct method of unknown sequence retrieval adjacent to a known locus by using universal primers. PCR Methods Applic 2:318–322.
Shyamala V, Ames FL (1989): Genome walking by single-specific-primer polymerase chain reaction: SSP-PCR. Gene 84:1–8.
Silverman GA, Ye RD, Pollock KM, Sadler JE, Korsmeyer S J (1989): Use of yeast artificial chromosome clones for mapping and walking within human chromosome segment 18q21.3. Proc Natl Acad Sci USA 86:7485–7489.
Sikela JM, Auffray C (1993): Finding new genes faster than ever. Nature Genet 3:189–191.
Törmänen YT, Swiderski PM, Kaplan BE, Pfeifer GP, Riggs AD (1992): Extension product capture improves genomic sequencing and DNase I footprinting by ligation-mediated PCR. Nucl Acids Res 20:5487–5488.
Triglia T, Peterson MG, Kemp DJ (1988): A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences. Nucl Acids Res 16:8186.
Verhasselt P, Voet M, Volckaert G (1992): DNA sequencing by a subcloning-walking strategy using a specific and a semi-random primer in the polymerase chain reaction. DNA Sequence 2: 281–287.
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Rosenthal, A., Platzer, M., Charnock-Jones, D.S. (1994). Capture PCR: An Efficient Method for Walking Along Chromosomal DNA and cDNA. In: Mullis, K.B., Ferré, F., Gibbs, R.A. (eds) The Polymerase Chain Reaction. Birkhäuser, Boston, MA. https://doi.org/10.1007/978-1-4612-0257-8_19
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DOI: https://doi.org/10.1007/978-1-4612-0257-8_19
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