Abstract
Transport of various types of cargoes in cells is based on molecular motors moving along the cytoskeleton. Often, these motors work in teams rather than as isolated molecules. This chapter discusses analytical and computational approaches to study the cooperation of multiple molecular motors theoretically. In particular, we focus on stochastic methods on various levels of coarse-graining and discuss how the parameters in a mesoscopic theoretical description can be determined by averaging of the underlying microscopic processes. These methods are applied toward understanding the effects of elastic coupling in a motor pair and in the cooperation of several motors pulling a bead. In addition, we review how coupling can have different effects on different motor species.
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- 1.
A discussion of the origin of the quote can be found at http://quoteinvestigator.com/2011/05/13/einstein-simple/#more-2363.
- 2.
- 3.
Thus, we implicitly assume an exponential dwell time distribution.
- 4.
The index ‘si’ is used to indicate explicitly the unbinding rate and average binding time of a single motor. The corresponding quantities for a single bound motor in a complex of several motors (e.g., in a motor pair as discussed below) are denoted by \(\epsilon _1\) and \(t_1\) respectively. These quantities are closely related to the single motor parameters, but there are some subtleties: While \(\epsilon _1=\epsilon _\mathrm{si}\), the dwell time in the 1-motor bound state (or the average duration of a 1-motor run) for cooperative motors also depends on the binding rate \(\pi \) of the second motor or any other in a system with more than 2 motors, \(t_1=(\epsilon _1+\pi )^{-1}<t_\mathrm{si}\).
- 5.
It is convenient to introduce a highest state \((2,N)\) to reduce the network to a finite number of states. The state \((2,N)\) corresponds to a very large extension between the motor. Such a configuration is unlikely, because the motors typically unbind before reaching this state. Nevertheless, one has to check that the results do not depend on the choice of the value of \(N\).
- 6.
There may be more parameters for nonlinear couplings.
- 7.
Of course, the molecules themselves may also add a layer of complexity to the patterns of movements, for example if the motor has several different functional modes, as reported for dyneins [92].
References
Ali, M.Y., Kennedy, G.G., Safer, D., Trybus, K.M., Sweeney, H.L., Warshaw, D.M.: Myosin Va and myosin VI coordinate their steps while engaged in an in vitro tug of war during cargo transport. Proc Natl Acad Sci U S A 108, E 535–541 (2011).
Ali, M.Y., Krementsova, E.B., Kennedy, G.G., Mahaffy, R., Pollard, T.D., Trybus, K.M., Warshaw, D.M.: Myosin va maneuvers through actin intersections and diffuses along microtubules. Proc Natl Acad Sci U S A 104, 4332–6 (2007).
Atzberger, P.J., Peskin, C.S.: A brownian dynamics model of kinesin in three dimensions incorporating the force-extension profile of the coiled-coil cargo tether. Bull Math Biol 68, 131–60 (2006).
Barak, P., Rai, A., Rai, P., Mallik, R.: Quantitative optical trapping on single organelles in cell extract. Nat Methods 10, 68–70 (2013).
Beeg, J., Klumpp, S., Dimova, R., Gracià, R.S., Unger, E., Lipowsky, R.: Transport of beads by several kinesin motors. Biophys J 94, 532–41 (2008).
Bell, G.I.: Models for the specific adhesion of cells to cells. Science 200, 618–627 (1978).
Berger, F., Keller, C., Klumpp, S., Lipowsky, R.: Distinct transport regimes of two elastically coupled molecular motors. Phys Rev Lett 108, 208101 (2012).
Berger, F., Keller, C., Lipowsky, R., Klumpp, S.: Elastic coupling effects in cooperative transport by a pair of molecular motors. Cell Molec Bioeng 6, 48–64 (2013).
Berger, F., Keller, C., Müller, M.J.I., Klumpp, S., Lipowsky, R.: Co-operative transport by molecular motors. Biochem Soc Trans 39, 1211–5 (2011).
Berger, F., Müller, M.J.I., Lipowsky, R.: Enhancement of the processivity of kinesin-transported cargo by myosin V. Europhys Lett 87, 28,002 (2009).
Bieling, P., Telley, I.A., Piehler, J., Surrey, T.: Processive kinesins require loose mechanical coupling for efficient collective motility. EMBO Rep 9, 1121–7 (2008).
Bierbaum, V., Lipowsky, R.: Chemomechanical coupling and motor cycles of myosin V. Biophys J 100, 1747–55 (2011).
Bierbaum, V., Lipowsky, R.: Dwell time distributions of the molecular motor myosin v. PLoS One 8, e55366 (2013).
Blehm, B.H., Schroer, T.A., Trybus, K.M., Chemla, Y.R., Selvin, P.R.: In vivo optical trapping indicates kinesin’s stall force is reduced by dynein during intracellular transport. Proc Natl Acad Sci U S A 110, 3381–6 (2013).
Block, S.M.: Kinesin motor mechanics: Binding, stepping, tracking, gating, and limping. Biophys J 92, 2986–95 (2007).
Böhm, K.J., Stracke, R., Mühlig, P., Unger, E.: Motor protein-driven unidirectional transport of micrometer-sized cargoes across isopolar microtubule arrays. Nanotechnology 12, 238–244 (2001).
Bouzat, S., Falo, F.: The influence of direct motor-motor interaction in models for cargo transport by a single team of motors. Phys Biol 7, 046009 (2010).
Campàs, O., Kafri, Y., Zeldovich, K.B., Casademunt, J., Joanny, J.F.: Collective dynamics of interacting molecular motors. Phys Rev Lett 97, 038101 (2006).
Carter, N.J., Cross, R.A.: Mechanics of the kinesin step. Nature 435, 308–12 (2005).
Clancy B.E., Behnke-Parks W.M., Andreasson J.O.L., Rosenfeld S.S., Block S.M.: A universal pathway for kinesin stepping. Nature Struct. Mol. Biol. 18 1020–7 (2011).
Clemen, A.E.M., Vilfan, M., Jaud, J., Zhang, J., Bärmann, M., Rief, M.: Force-dependent stepping kinetics of myosin-V. Biophys J 88, 4402–10 (2005).
Constantinou, P.E., Diehl, M.R.: The mechanochemistry of integrated motor protein complexes. J Biomech 43, 31–7 (2010).
Coppin, C., Pierce, D., Hsu, L., Vale, R.: The load dependence of kinesin’s mechanical cycle. Proc Natl Acad Sci U S A 94, 8539–8544 (1997).
Crevenna, A.H., Madathil, S., Cohen, D.N., Wagenbach, M., Fahmy, K., Howard, J.: Secondary structure and compliance of a predicted flexible domain in kinesin-1 necessary for cooperation of motors. Biophys J 95, 5216–27 (2008).
Derr, N.D., Goodman, B.S., Jungmann, R., Leschziner, A.E., Shih, W.M., Reck-Peterson, S.L.: Tug-of-war in motor protein ensembles revealed with a programmable dna origami scaffold. Science 338, 662–5 (2012).
Driver, J.W., Jamison, D.K., Uppulury, K., Rogers, A.R., Kolomeisky, A.B., Diehl, M.R.: Productive cooperation among processive motors depends inversely on their mechanochemical efficiency. Biophys J 101, 386–95 (2011).
Driver, J.W., Rogers, A.R., Jamison, D.K., Das, R.K., Kolomeisky, A.B., Diehl, M.R.: Coupling between motor proteins determines dynamic behaviors of motor protein assemblies. Phys Chem Chem Phys 12, 10,398–405 (2010).
Erickson, R.P., Jia, Z., Gross, S.P., Yu, C.C.: How molecular motors are arranged on a cargo is important for vesicular transport. PLoS Comput Biol 7, e1002,032 (2011).
Fisher, M.E., Kolomeisky, A.B.: Simple mechanochemistry describes the dynamics of kinesin molecules. Proc Natl Acad Sci USA 98, 7748–7753 (2001).
Furuta, K., Furuta, A., Toyoshima, Y.Y., Amino, M., Oiwa, K., Kojima, H.: Measuring collective transport by defined numbers of processive and nonprocessive kinesin motors. Proc Natl Acad Sci U S A 110, 501–6 (2013).
Gagliano, J., Walb, M., Blaker, B., Macosko, J.C., Holzwarth, G.: Kinesin velocity increases with the number of motors pulling against viscoelastic drag. Eur Biophys J 39, 801–13 (2010).
Gennerich, A., Carter, A.P., Reck-Peterson, S.L., Vale, R.D.: Force-induced bidirectional stepping of cytoplasmic dynein. Cell 131, 952 (2007).
Grant, B.J., Gheorghe, D.M., Zheng, W., Alonso, M., Huber, G., Dlugosz, M., McCammon, J.A., Cross, R.A.: Electrostatically biased binding of kinesin to microtubules. PLoS Biol 9, e1001207 (2011).
Gross, S.P., Vershinin, M., Shubeita, G.T.: Cargo transport: two motors are sometimes better than one. Curr Biol 17, R478–86 (2007).
Hancock, W.O., Howard, J.: Kinesin’s processivity results from mechanical and chemical coordination between the ATP hydrolysis cycles of the two motor domains. Proc Natl Acad Sci USA 96, 13147–13152 (1999).
Hendricks, A.G., Perlson, E., Ross, J.L., Schroeder 3rd, H.W., Tokito, M., Holzbaur, E.L.F.: Motor coordination via a tug-of-war mechanism drives bidirectional vesicle transport. Curr Biol 20, 697–702 (2010).
Hill, T.: Free Energy Transduction in Biology. Academic Press, New York (1977).
Hill, T.L.: Interrelations between random walks on diagrams (graphs) with and without cycles. Proc Natl Acad Sci USA 85, 2879–2883 (1988).
Hill, T.L.: Number of visits to a state in a random walk, before absorption, and related topics. Proc Natl Acad Sci USA 85, 4577–4581 (1988).
Holmes, K.C.: Muscle contraction. In: L. Wolpert (ed.) The limits of reductionism in biology, Novartis Foundation Symposium 213, pp. 76–92. Wiley, Chichester (1998).
Howard, J.: Mechanics of Motor Proteins and the Cytoskeleton. Sinauer Associates, Sunderland (Mass.) (2001).
Howard, J., Hudspeth, A.J., Vale, R.D.: Movement of microtubules by single kinesin molecules. Nature 342, 154–158 (1989).
Hwang, W., Lang, M.J., Karplus, M.: Force generation in kinesin hinges on cover-neck bundle formation. Structure 16, 62–71 (2008).
Hyeon, C., Klumpp, S., Onuchic, J.N.: Kinesin’s backsteps under mechanical load. Phys Chem Chem Phys 11, 4899–910 (2009).
Hyeon, C., Onuchic, J.N.: Mechanical control of the directional stepping dynamics of the kinesin motor. Proc Natl Acad Sci U S A 104, 17,382–7 (2007).
Jülicher, F., Ajdari, A., Prost, J.: Modeling molecular motors. Rev Mod Phys 69, 1269–1281 (1997).
Keller, C.: Coupled molecular motors. Diploma thesis, Humboldt-Universität, Berlin (2009).
Keller, C.: Coupled Molecular Motors: Network Representation & Dynamics of Kinesin Motor Pairs. Ph.D. thesis, Universität Potsdam (2013).
Keller, C., Berger, F., Liepelt, S., Lipowsky, R.: Network complexity and parametric simplicity for cargo transport by two molecular motors. J Stat Phys 150, 205–234 (2013).
King, S.J., Schroer, T.A.: Dynactin increases the processivity of the cytoplasmic dynein motor. Nat Cell Biol 2, 20 (2000).
Klumpp, S., Lipowsky, R.: Cooperative cargo transport by several molecular motors. Proc Natl Acad Sci U S A 102, 17,284–9 (2005).
Korn, C.B., Klumpp, S., Lipowsky, R., Schwarz, U.S.: Stochastic simulations of cargo transport by processive molecular motors. J Chem Phys 131, 245,107 (2009).
Kramers, H.: Brownian motion in a field of force and the diffusion model of chemical reactions. Physica 7, 284 (1940).
Kunwar, A., Mogilner, A.: Robust transport by multiple motors with nonlinear force-velocity relations and stochastic load sharing. Phys Biol 7, 16012 (2010).
Kunwar, A., Tripathy, S.K., Xu, J., Mattson, M.K., Anand, P., Sigua, R., Vershinin, M., McKenney, R.J., Yu, C.C., Mogilner, A., Gross, S.P.: Mechanical stochastic tug-of-war models cannot explain bidirectional lipid-droplet transport. Proc Natl Acad Sci U S A 108, 18960–5 (2011).
Larson, A.G., Landahl, E.C., Rice, S.E.: Mechanism of cooperative behaviour in systems of slow and fast molecular motors. Phys Chem Chem Phys 11, 4890–8 (2009).
Leduc, C., Campàs, O., Zeldovich, K.B., Roux, A., Jolimaitre, P., Bourel-Bonnet, L., Goud, B., Joanny, J.F., Bassereau, P., Prost, J.: Cooperative extraction of membrane nanotubes by molecular motors. Proc Natl Acad Sci USA 101, 17096–17101 (2004).
Leduc, C., Ruhnow, F., Howard, J., Diez, S.: Detection of fractional steps in cargo movement by the collective operation of kinesin-1 motors. Proc Natl Acad Sci USA 104, 10847–10852 (2007).
Leidel, C., Longoria, R.A., Gutierrez, F.M., Shubeita, G.T.: Measuring molecular motor forces in vivo: implications for tug-of-war models of bidirectional transport. Biophys J 103, 492–500 (2012).
Li, X., Lipowsky, R., Kierfeld, J.: Critical motor number for fractional steps of cytoskeletal filaments in gliding assays. PLoS One 7, e43219 (2012).
Liepelt, S., Lipowsky, R.: Kinesin’s network of chemomechanical motor cycles. Phys Rev Lett 98, 258102 (2007).
Liepelt, S., Lipowsky, R.: Steady-state balance conditions for molecular motor cycles and stochastic nonequilibrium processes. Europhys Lett 77, 50002 (2007).
Liepelt, S., Lipowsky, R.: Impact of slip cycles on the operation modes and efficiency of molecular motors. J Stat Phys 141, 1–16 (2010).
Lipowsky, R., Klumpp, S.: ’Life is motion’ - multiscale motility of molecular motors. Physica A 352, 53–112 (2005).
Lipowsky, R., Liepelt, S.: Chemomechanical coupling of molecular motors: Thermodynamics, network representations and balanced conditions. J Stat Phys 130, 39–67 (2008). Erratum: J Stat Phys 135, 777–778 (2009).
Lu, H., Efremov, A.K., Bookwalter, C.S., Krementsova, E.B., Driver, J.W., Trybus, K.M., Diehl, M.R.: Collective dynamics of elastically coupled myosin V motors. J Biol Chem 287, 27,753–61 (2012).
Mallik, R., Carter, B.C., Lex, S.A., King, S.J., Gross, S.: Cytoplasmic dynein functions as a gear in response to load. Nature 427, 649 (2004).
Mallik, R., Petrov, D., Lex, S.A., King, S., Gross, S.: Building complexity: An in vitro study of cytoplasmic dynein with in vivo implications. Curr Biol 15, 2075–2085 (2005).
McKenney, R.J., Vershinin, M., Kunwar, A., Vallee, R.B., Gross, S.P.: Lis1 and NudE induce a persistent dynein force-producing state. Cell 141, 304–14 (2010).
Mehta, A.D., Rock, R.S., Rief, M., Spudich, J.A., Mooseker, M.S., Cheney, R.E.: Myosin-V is a processive actin-based motor. Nature 400, 590–593 (1999).
Müller, M.J.I., Klumpp, S., Lipowsky, R.: Motility states of molecular motors engaged in a stochastic tug-of-war. J Stat Phys 133, 1059–1081 (2008).
Müller, M.J.I., Klumpp, S., Lipowsky, R.: Tug-of-war as a cooperative mechanism for bidirectional cargo transport by molecular motors. Proc Natl Acad Sci USA 105, 4609–4614 (2008).
Müller, M.J.I., Klumpp, S., Lipowsky, R.: Bidirectional transport by molecular motors: enhanced processivity and response to external forces. Biophys J 98, 2610–8 (2010).
Ökten, Z., Churchman, L.S., Rock, R.S., Spudich, J.A.: Myosin VI walks hand-over-hand along actin. Nat Struct Mol Biol 11, 884 (2004).
Posta, F., D’Orsogna, M.R., Chou, T.: Enhancement of cargo processivity by cooperating molecular motors. Phys Chem Chem Phys 11, 4851–60 (2009).
Rice, S., Lin, A.W., Safer, D., Hart, C.L., Naber, N., Carragher, B.O., Cain, S.M., Pechatnikova, E., Wilson-Kubalek, E.M., Whittaker, M., Pate, E., Cooke, R., Taylor, E.W., Milligan, R.A., Vale, R.D.: A structural change in the kinesin motor protein that drives motility. Nature 402, 778–84 (1999).
Risken, H.: The Fokker-Planck Equation. Springer, Berlin Heidelberg (1996).
Rock, R.S., Rice, S.E., Wells, A.L., Purcell, T.J., Spudich, J.A., Sweeney, H.L.: Myosin VI is a processive motor with a large step size. Proc Natl Acad Sci USA 98, 13,655 (2001).
Rogers, A.R., Driver, J.W., Constantinou, P.E., Kenneth Jamison, D., Diehl, M.R.: Negative interference dominates collective transport of kinesin motors in the absence of load. Phys Chem Chem Phys 11, 4882–9 (2009).
Romberg, L., Vale, R.: Chemomechanical cycle of kinesin differs from that of myosin. Nature 361, 168–170 (1993).
Schliwa, M., Woehlke, G.: Molecular motors. Nature 422, 759–765 (2003).
Schnitzer, M.J., Visscher, K., Block, S.M.: Force production by single kinesin motors. Nature Cell Biol. 2, 718–723 (2000).
Schuster, M., Lipowsky, R., Assmann, M.A., Lenz, P., Steinberg, G.: Transient binding of dynein controls bidirectional long-range motility of early endosomes. Proc Natl Acad Sci U S A 108, 3618–23 (2011).
Soppina, V., Rai, A.K., Ramaiya, A.J., Barak, P., Mallik, R.: Tug-of-war between dissimilar teams of microtubule motors regulates transport and fission of endosomes. Proc Natl Acad Sci U S A 106, 19,381–6 (2009).
Svoboda, K., Block, S.M.: Force and velocity measured for single kinesin molecules. Cell 77, 773 (1994).
Svoboda, K., Schmidt, C.F., Schnapp, B.J., Block, S.M.: Direct observation of kinesin stepping by optical trapping interferometry. Nature 365, 721–727 (1993).
Toba, S., Watanabe, T.M., Yamaguchi-Okimoto, L., Toyoshima, Y.Y., Higuchi, H.: Overlapping hand-over-hand mechanism of single molecular motility of cytoplasmic dynein. Proc Natl Acad Sci USA 103, 5741 (2006).
van Kampen, N.: Stochastic Processes in Physics and Chemistry. Elsevier, Amsterdam (1992).
Veigel, C., Coluccio, L.M., Jontes, J.D., Sparrow, J.C., Milligan, R.D., Molloy, J.E.: The motor protein myosin-I produces its working stroke in two steps. Nature 398, 530–533 (1999).
Vershinin, M., Carter, B.C., Razafsky, D.S., King, S.J., Gross, S.P.: Multiple-motor based transport and its regulation by tau. Proc Natl Acad Sci U S A 104, 87–92 (2007).
Visscher, K., Schnitzer, M.J., Block, S.M.: Single kinesin molecules studied with a molecular force clamp. Nature 400, 184 (1999).
Walter, W.J., Koonce, M.P., Brenner, B., Steffen, W.: Two independent switches regulate cytoplasmic dynein’s processivity and directionality. Proc Natl Acad Sci U S A 109, 5289–93 (2012).
Wang, Z., Li, M.: Force-velocity relations for multiple-molecular-motor transport. Phys Rev E 80, 041923 (2009).
Welte, M.A.: Bidirectional transport along microtubules. Curr Biol 14, R525–37 (2004).
Welte, M.A., Gross, S.P.: Molecular motors: a traffic cop within? HFSP J 2, 178–82 (2008).
Xu, J., Shu, Z., King, S.J., Gross, S.P.: Tuning multiple motor travel via single motor velocity. Traffic 13, 1198–205 (2012).
Yildiz, A., Forkey, J.N., McKinney, S.A., Ha, T., Goldman, Y.E., Selvin, P.R.: Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5-nm localization. Science 300, 2061–2065 (2003).
Yildiz, A., Selvin, P.R.: Fluorescence imaging with one nanometer accuracy: application to molecular motors. Acc Chem Res 38, 574–82 (2005).
Yildiz, A., Tomishige, M., Gennerich, A., Vale, R.D.: Intramolecular strain coordinates kinesin stepping behaviour along microtubules. Cell 134, 1030–1040 (2008).
Yildiz, A., Tomishige, M., Vale, R.D., Selvin, P.R.: Kinesin walks hand-over-hand. Science 303, 676–678 (2004).
Zhang, Y.: Cargo transport by several motors. Phys Rev E 83, 011909 (2011).
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Klumpp, S., Keller, C., Berger, F., Lipowsky, R. (2015). Molecular Motors: Cooperative Phenomena of Multiple Molecular Motors. In: De, S., Hwang, W., Kuhl, E. (eds) Multiscale Modeling in Biomechanics and Mechanobiology. Springer, London. https://doi.org/10.1007/978-1-4471-6599-6_3
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