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Genome Exploitation and Bioinformatics Tools

  • Anne de Jong
  • Auke J. van Heel
  • Oscar P. Kuipers
Chapter

Abstract

Bioinformatic tools can greatly improve the efficiency of bacteriocin screening efforts by limiting the amount of strains. Different classes of bacteriocins can be detected in genomes by looking at different features. Finding small bacteriocins can be especially challenging due to low homology and because small open reading frames (ORFs) are often omitted from annotations. In this chapter, several bioinformatic tools/strategies to identify bacteriocins in genomes are discussed.

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Copyright information

© Springer Science+Business Media, LLC 2011

Authors and Affiliations

  • Anne de Jong
  • Auke J. van Heel
  • Oscar P. Kuipers
    • 1
  1. 1.Department of Molecular GeneticsUniversity of Groningen, Groningen Biomolecular Sciences and Biotechnology InstituteGroningenThe Netherlands

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