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DNA Sequence Analysis

  • Victor Bloomfield
Chapter
Part of the Biological and Medical Physics, Biomedical Engineering book series (BIOMEDICAL)

Abstract

In this chapter we introduce some of the elementary concepts for analyzing DNA sequences in terms of “words” of length 1 (bases), 2 (base pairs), 3 (triplets, such as codons), restriction sites, etc. The analysis uses some of the basic probability concepts that we have worked with in the previous chapter. Our treatment follows closely that of Deonier et al. [18, Chs. 2 and 3].

Keywords

Dinucleotide Frequency Markov Transition Matrix Dinucleotide Sequence Replication Fork Move Endonuclease EcoR1 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer-Verlag New York 2009

Authors and Affiliations

  1. 1.Department of Biochemistry, Molecular Biology, and BiophysicsUniversity of Minnesota6-155 Jackson Hall MinneapolisUSA

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