Skip to main content

New Light on Aerobic Anoxygenic Phototrophs

  • Chapter
Book cover The Purple Phototrophic Bacteria

Part of the book series: Advances in Photosynthesis and Respiration ((AIPH,volume 28))

Summary

Discovered 30 years ago, aerobic anoxygenic phototrophs (AAP) represent an entirely new bacterial functional group that was surprisingly found to constitute nearly 10% of microbial cells in the world’s biggest surface ecosystem, the ocean. These intriguing and colorful descendents of anaerobic anoxygenic phototrophs possess a fully functional photosynthetic apparatus that is paradoxically operative only under oxic conditions. An obviously ancient group, the AAP display numerous extensive evolutionary modifications to their photosynthetic machinery from that of their ancestors, such as different suites of light-harvesting 2 complexes and, in some species, the only zinc-based chlorophyll pigments found anywhere in nature. Whereas AAP are incapable of photoautotrophy and rely on heterotrophy for 80% or more of their cellular energetics, sunlight can double organic carbon assimilatory efficiency over that of strict heterotrophs, making AAP key players in the marine carbon cycle. The AAP inhabit not just soil, rivers and oceans, but also hypersaline waters, thermal springs and even the dark realm of deep ocean hydrothermal vents. Ubiquity and atypical photosynthetic nature has inspired an ever-increasing scientific interest in the AAP, for which there are more exceptions than rules.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 259.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 329.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 329.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Abbreviations

AAP:

aerobic anoxygenic phototrophs

BChl:

bacteriochlorophyll

Cmi. :

Citromicrobium

Cyt:

cytochrome

D :

Dinoroseobacter

DMSP:

dimethylsulfoniopropionate

E. :

Erythromicrobium

Erb. :

Erythrobacter

GYa:

109 years ago

H. :

Hoeflea

IREM:

infrared epifluorescence microscopy

IRFRR:

infrared fast repetition rate fluorometry

LH:

lightharvesting

PEP:

phosphoenol pyruvate

PSU:

photosynthetic unit

QPCR:

quantitative polymerase chain reaction

Q y :

electronic transition of BChl a from ground state to lowest excited singlet state

R. :

Roseicyclus

Rba. :

Rhodobacter

RC:

reaction center

Rps. :

Rhodopseudomonas

Rsc. :

Roseococcus

Rst. :

Roseateles

Rubisco:

ribulose-1,5-bisphosphate carboxylase/oxygenase

Rva:

Roseovarius

S. :

Stappia

Srb. :

Sandaracinobacter

Stl. :

Staleya

TMAO:

trimethylamine N-oxide

References

  • Alarico S, Rainey FA, Empadinhas N, Schumann P, Nobre MF and Da Costa MS (2002) Rubritepida flocculans gen. nov., sp. nov., a new slightly thermophilic member of the α-1 subclass of the Proteobacteria. Syst Appl Microbiol 25: 198–206

    PubMed  CAS  Google Scholar 

  • Allgaier M, Uphoff H, Felske A and Wagner-Döbler I (2003) Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats. Appl Environ Microbiol 69: 5051–5059

    PubMed  CAS  Google Scholar 

  • Beatty JT (2002) On the natural selection and evolution of the aerobic phototrophic bacteria. Photosynth Res 73: 109–114

    PubMed  CAS  Google Scholar 

  • Beatty JT, Overmann J, Lince MT, Manske AK, Lang AS, Blankenship RE, van Dover CL, Martinson TA and Plumley FG (2005) An obligately photosynthetic bacterial anaerobe from a deep-sea hydrothermal vent. Proc Natl Acad Sci 102: 9306–9310

    PubMed  CAS  Google Scholar 

  • Béjà O, Suzuki MT, Heidelberg JF, Nelson WC, Preston CM, Hamada T, Elsen JA, Fraser CM and DeLong EF (2002) Unsuspected diversity among marine aerobic anoxygenic phototrophs. Nature 415: 630–633

    PubMed  Google Scholar 

  • Biebl H and Wagner-Döbler I (2006) Growth and bacteriochlorophyll a formation in taxonomically diverse aerobic anoxygenic phototrophic bacteria in chemostat culture: Influence of light regimen and starvation. Proc Biochem 41: 2153–2159

    CAS  Google Scholar 

  • Biebl H, Allgaier M, Lünsdorf H, Pukall R, Tindall BJ and Wagner-Döbler I (2005a) Roseovarius mucosus sp. nov., amember of the Roseobacter clade with trace amounts of bacteriochlorophyll a. Int J Syst Evol Microbiol 55: 2377–2383

    PubMed  CAS  Google Scholar 

  • Biebl H, Allgaier M, Tindall, BJ Koblížek M, Lünsdorf H, Pukall R and Wagner-Döbler I (2005b) Dinoroseobacter shibae gen nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates. Int J Syst Evol Microbiol 55: 1089–1096

    PubMed  CAS  Google Scholar 

  • Biebl H, Tindall BJ, Pukall R, Lünsdorf H, Allgaier M and Wagner-Döbler I (2006) Hoeflea phototrophica sp. nov., a novel marine aerobic alphaproteobacterium that forms bacteriochlorophyll a. Int J Syst Evol Microbiol 56: 821–826

    PubMed  CAS  Google Scholar 

  • Biebl H, Pukall R, Lünsdorf H, Schulz S, Allgaier M, Tindall BJ and Wagner-Döbler I (2007) Description of Labrenzia alexandrii gen. nov., sp. nov., a novel alphaproteobacterium containing bacteriochlorophyll a, and a proposal for reclassification of Stappia aggregata as Labrenzia aggregata comb. nov., of Stappia marina as Labrenzia marina comb. nov. and of Stappia alba as Labrenzia alba comb. nov., and emended descriptions of the genera Pannonibacter, Stappia and Roseibium, and of the species Roseibium denhamense and Roseibium hamelinense. Int J Syst Evol Microbiol 57: 1095–1107

    PubMed  CAS  Google Scholar 

  • Boettcher KJ, Geaghan KK, Maloy AP and Barber BJ (2005) Roseovarius crassostreae sp. nov., a member of the Roseobacter clade and the apparent cause of juvenile oyster disease (JOD) in cultured Eastern oysters. Int J Syst Evol Microbiol 55: 1531–1537

    PubMed  CAS  Google Scholar 

  • Boldareva EN, Bryantseva IA, Tsapin A, Nelson K, Sorokin DY, Tourova TP, Boichenko VA, Stadnichuk IN and Gorlenko VM (2007) The new alkaliphilic bacteriochlorophyll a-containing bacterium Roseinatronobacter monicus sp. nov. from the hypersaline soda Mono Lake (California, United States). Microbiology 76: 82–92

    CAS  Google Scholar 

  • Brown MV and Fuhrman JA (2005) Marine bacterial microdiversity as revealed by internal transcribed spacer analysis. Aquat Microbial Ecol 41: 15–23

    Google Scholar 

  • Cho JC, Stapels MD, Morris RM, Vergin MS, Schwalbach MS, Givan SA, Barofsky DF and Giovannoni SJ (2007) Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria. Environ Microbiol 9: 1456–1463

    PubMed  CAS  Google Scholar 

  • Cogdell RJ, Howard TD, Isaacs NW, McLuskey K and Gardiner AT (2002) Structural factors which control the position of the Qy absorption band of bacteriochlorophyll a in purple bacterial antenna complexes. Photosynth Res 74: 135–141

    PubMed  CAS  Google Scholar 

  • Cottrell MT, Mannino A and Kirchman DL (2006) Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre. Appl Environ Microbiol 72: 557–564

    PubMed  CAS  Google Scholar 

  • Denner, EBM, Vybiral D, Koblížek M, Kämpfer P, Busse H and Velimirov B (2002) Erythrobacter citreus sp. nov., a yellow-pigmented bacterium that lacks bacteriochlorophyll a, isolated from the western Mediterranean Sea. Int J Syst Evol Microbiol 62: 1655–1661

    Google Scholar 

  • Du H, Jiao N, Hu Y and Zeng Y (2006) Real-time PCR for quantification of aerobic anoxygenic phototrophic bacteria based on pufM gene in marine environment. J Exp Mar Biol Ecol 329: 113–121

    CAS  Google Scholar 

  • Evans K, Fordham-Skelton AP, Mistry H, Reynolds CD, Lawless AM and Papiz MZ (2005) A bacteriophytochrome regulates the synthesis of LH4 complexes in Rhodopseudomonas palustris. Photosynth Res 85: 169–180

    PubMed  CAS  Google Scholar 

  • Fenchel T (2001) Marine bugs and carbon flow. Science 292: 2444–2445

    PubMed  CAS  Google Scholar 

  • Fleischman D and Kramer D (1998) Photosynthetic rhizobia. Biochim Biophys Acta 1364: 17–36

    PubMed  CAS  Google Scholar 

  • Foesel BU, Gößner AS, Drake HL and Schramm A (2007) Geminicoccus roseus gen. nov., sp. nov., an aerobic phototrophic Alphaproteobacterium isolated from a marine aquaculture biofilter. Syst Appl Microbiol 30: 581–586

    PubMed  CAS  Google Scholar 

  • Fowler GJS, Visschers RW, Grief GG, van Grondelle R and Hunter CN (1992) Genetically modified photosynthetic antenna complexes with blueshifted absorbance bands. Nature 355: 848–850

    PubMed  CAS  Google Scholar 

  • Fowler GJS, Sockalingum GD, Robert B and Hunter CN (1994) Blue shifts in bacteriochlorophyll absorbance correlate with changed hydrogen bonding patterns in light harvesting LH2 mutants of Rhodobacter sphaeroides with alterations at Tyr44 and Tyr45. Biochem. J. 299: 695–700

    PubMed  CAS  Google Scholar 

  • Francia F, Wang J, Venturoli G, Melandri BA, Barz WP and Oesterhelt D (1999) The reaction center-LH1 antenna complex of Rhodobacter sphaeroides contains one PufX molecule which is involved in dimerization of this complex. Biochemistry 38: 6834–6845

    PubMed  CAS  Google Scholar 

  • Fraser NJ, Hashimoto H and Cogdell RJ (2001) Carotenoids and bacterial photosynthesis: The story so far…. Photosynth Res 70: 249–256

    PubMed  CAS  Google Scholar 

  • Fuchs BM, Spring S, Teeling H, Quast C, Wulf J, Schattenhofer M, Yan S, Ferriera S, Johnson J, Glöckner FO and Amann R (2007) Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis. Proc Natl Acad Sci 104: 2891–2896

    PubMed  CAS  Google Scholar 

  • Gich F and Overmann J (2006) Sandarakinorhabdus limnophila gen. nov., sp. nov., a novel bacteriochlorophyll a-containing, obligately aerobic bacterium isolated from freshwater lakes. Int J Syst Evol Microbiol 56: 847–854

    PubMed  CAS  Google Scholar 

  • Gich F, Schubert K, Bruns A, Hoffelner H and Overmann J (2005) Specific detection, isolation, and characterization of selected, previously unculturedmembers of the freshwater bacterioplankton community. Appl Environ Microbiol 71: 5908–5919

    PubMed  CAS  Google Scholar 

  • Giraud E and Fleischman D (2004) Nitrogen-fixing symbiosis between photosynthetic bacteria and legumes. Photosynth Res 82: 115–130

    PubMed  CAS  Google Scholar 

  • González JM, Covert JS, Whitman WB, Henriksen JR, Mayer F, Scharf B, Schmitt R, Buchan A, Fuhrman JA, Kiene RP and Moran MA (2003) Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp.nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments. Int J Syst Evol Microbiol 53: 1261–1269

    PubMed  Google Scholar 

  • Hartigan N, Tharia HA, Sweeney F, Lawless AM and Papiz MZ (2002) The 7.5-Å electron density and spectroscopic properties of a novel low-light B800 LH2 from Rhodopseudomonas palustris. Biophys J 82: 963–977

    Article  PubMed  CAS  Google Scholar 

  • Hiraishi A and Shimada K (2001) Aerobic anoxygenic photosynthetic bacteria with zinc-bacteriochlorophyll. J Gen Appl Microbiol 47: 161–180

    PubMed  CAS  Google Scholar 

  • Hucke O, Schiltz E, Drews G and Labahn A (2003) Sequence analysis reveals new membrane anchor of reaction centre-bound cytochromes possibly related to PufX. FEBS Lett 535: 166–170

    PubMed  CAS  Google Scholar 

  • Igarashi N, Harada J, Nagashima S, Matsuura K, Shimada K and Nagashima KVP (2001) Horizontal transfer of the photosynthesis gene cluster and operon rearrangement in purple bacteria. J Mol Evol 52: 333–341

    PubMed  CAS  Google Scholar 

  • Ivanova EP, Pham DK, Wright JP and Nicolau DV (2002) Detection of coccoid forms of Sulfitobacter mediterraneus using atomic force microscopy. FEMS Microbiol Lett 214: 177–181

    PubMed  CAS  Google Scholar 

  • Ivanova EP, Bowman JP, Lysenko AM, Zhukova NV, Gorshkova NM, Kuznetsova TA, Kalinovskaya NI, Shevchenko LS and MikhailovVV (2005) Erythrobacter vulgaris sp. nov., anovel organism isolated from the marine invertebrates. Syst Appl Microbiol 28: 123–130

    PubMed  CAS  Google Scholar 

  • Jiao N, Zhang Y and Chen Y (2006) Time series observation based InfraRed Epifluorescence Microscopic (TIREM) approach for accurate enumeration of bacteriochlorophyll-containing microbes in marine environments. J Microbiol Meth 65: 442–452

    CAS  Google Scholar 

  • Karr EA, Sattley WM, Jung DO, Madigan MT and Achenbach LA (2003) Remarkable diversity of phototrophic purple bacteria in a permanently frozen Antarctic lake. Appl Environ Microbiol 69: 4910–4914

    PubMed  CAS  Google Scholar 

  • Kim B-C, Park JR, Bae J-W, Rhee S-K, Kim K-H, Oh J-W and Park Y-H (2006) Stappia marina sp. nov., a marine bacterium isolated from the Yellow Sea. Int J Syst Evol Microbiol 56: 75–79

    PubMed  CAS  Google Scholar 

  • Kim MK, Schubert K, Im W-T, Kim K-H, Lee S-T and Overmann J (2007) Sphingomonas kaistensis sp. nov., a novel alphaproteobacterium containing pufLM genes. Int J Syst Microbiol Ecol 57: 1527–1534

    CAS  Google Scholar 

  • Klug G (1993) Regulation of expression of photosynthesis genes in anoxygenic photosynthetic bacteria. Arch Microbiol 159: 397–404

    PubMed  CAS  Google Scholar 

  • Koblizek M, Béjà O, Bidigare RR, Christensen S, Benetiz-Nelson B, Vetriani C, Kolber MK, Falkowski PG and Kolber ZS (2003) Isolation and characterization of Erythrobacter sp. strains from the upper ocean. Arch Microbiol 180: 327–338

    PubMed  CAS  Google Scholar 

  • Koblížek M, Stoń-Egiert J, Sagan S and Kolber ZS (2005) Diel changes in bacteriochlorophyll a concentration suggest rapid bacterioplankton cycling in the Baltic Sea. FEMS Microbiol Ecol 51: 353–361

    PubMed  Google Scholar 

  • Koblížek M, Falkowski PG and Kolber ZS (2006) Diversity and distribution of photosynthetic bacteria in the Black Sea. Deep-Sea Res II 53: 1934–1944

    Google Scholar 

  • Koblížek M, Mašín M, Ras J, Poulton AJ and Prášil O (2007) Rapid growth rates of aerobic anoxygenic phototrophs in the ocean. Environ Microbiol 9: 2401–2406

    PubMed  Google Scholar 

  • Kohler S, Schwarze C, Herter S, Gad’on N, Drews G and Labahn A (2005) Exploring the structure of the reaction center from the aerobic photosynthetic bacterium Roseobacter denitrificans with fourier transform infrared spectroscopy. In: van der Est A and Bruce D (eds) Photosynthesis: Fundamental Aspects to Global Perspectives, pp 202–204. Alliance Communications Group, Lawrence

    Google Scholar 

  • Kolber ZS, Van Dover CL, Niederman RA and Falkowski PG (2000) Bacterial photosynthesis in surface waters of the open ocean. Nature 407: 177–179

    PubMed  CAS  Google Scholar 

  • Kolber ZS, Plumley G, Lang AS, Beatty JT, Blankenship RE, Van Dover CL, Vetriani C, Koblížek M, Rathgeber C and Falkowski PG (2001) Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science 292: 2492–2495

    PubMed  CAS  Google Scholar 

  • Komagata K (1989) Taxonomy of facultative methylotrophs. In: Harashima K, Shiba T and Murata N (eds) Aerobic Photosynthetic Bacteria, pp 25–38. Japan Scientific Societies Press, Tokyo and Springer-Verlag, Berlin

    Google Scholar 

  • Krinsky (1971) IX. Function. In: Isler O (ed) Carotenoids, pp 670–716. Birkhäuser Verlag, Basel

    Google Scholar 

  • Labrenz M, Lawson PA, Tindall BJ, Collins MD and Hirsch P (2005) Roseisalinus antarcticus gen. nov., sp. nov., a novel aerobic bacteriochlorophyll a-producing α-proteobacterium isolated from hypersaline Ekho Lake, Antarctica. Int J Syst Evol Microbiol 55: 41–47

    PubMed  CAS  Google Scholar 

  • Lami R, Cottrell MT, Ras J, Ulloa O, Obernosterer I, Claustre H, Kirchman DL and Lebaron P (2007) High abundances of aerobic anoxygenic phototrophic bacteria in the South Pacific Ocean. Appl Environ Microbiol 73: 4198–4205

    PubMed  CAS  Google Scholar 

  • Larimer FW, Chain P, Hauser L, Lamerdin J, Malfatti S, Do L, Land, ML, Pelletier DA, Beatty JT, Lang AS, Tabita FR, Gibson JL, Hanson TE, Bobst C, Torres JLTy, Peres C, Harrison FH, Gibson J and Harwood CS (2004) Complete genome sequence of the metabolically versatile photo synthetic bacterium Rhodopseudomonas palustris. Nature Biotech 22: 55–61

    CAS  Google Scholar 

  • Liebetanz R, Hornberger U and Drews G (1991) Organization of the genes coding for the reaction center L and M subunits and B870 antenna polypeptides alpha and beta from the aerobic photo synthetic bacterium Erythrobacter sp. OCh1 14. Mol Microbiol 5: 1459–1468

    PubMed  CAS  Google Scholar 

  • Macián MC, Arahal DR, Garay E, Ludwig W, Schleifer KH and Pujalte MJ (2005) Thalassobacter stenotrophicus gen. nov., sp. nov., a novel marine α-proteobacterium isolated from Mediterranean sea water. Int J Syst Evol Microbiol 55: 105–110

    PubMed  Google Scholar 

  • Marchand EA and Silverstein J (2003) The role of enhanced heterotrophic bacterial growth on iron oxidation by Acidithiobacillus ferrooxidans. Geomicrobiol J 20: 231–244

    CAS  Google Scholar 

  • Marrs B (1981) Mobilization of the genes for photosynthesis from Rhodopseudomonas capsulata by a promiscuous plasmid. J Bacteriol 146: 1003–1012

    PubMed  CAS  Google Scholar 

  • Masuda S, Matsumoto Y, Nagashima KVP, Shimada K, Inoue K, Bauer CE and Matsuura K (1999) Structural and functional analyses of photo synthetic regulatory genes regA and regB from Rhodovulum sulfidophilum, Roseobacter denitrificans and Rhodobacter capsulatus. J Bacteriol 181: 4205–4215

    PubMed  CAS  Google Scholar 

  • Murray RGE, Brenner DJ, Colwell RR, De Vos P, Goodfellow M, Grimont PAD, Pfennig N, Stackebrandt E and Zivarzin GA (1990) Report of the ad hoc committee on approaches to taxonomy within Proteobacteria. Int J Syst Bacteriol 40: 213–215

    Google Scholar 

  • Nagashima KVP, Matsuura K, Wakao N, Hiraishi A and Shimada K (1997) Nucelotide sequences of genes coding for photo synthetic reaction centers and light-harvesting proteins of Acidiphilium rubrum and related aerobic acidophilic bacteria. Plant Cell Physiol 38: 1249–1258

    PubMed  CAS  Google Scholar 

  • Ouchane S, Steunou A, Picaud M and Astier C (2004) Aerobic and anaerobic Mg-protoporphyrin monomethyl ester cyclases in purple bacteria. J Biol Chem 279: 6385–6394

    PubMed  CAS  Google Scholar 

  • Oz A, Sabehi G, Koblížek M, Massana R and Béjà O (2005) Roseobacter-like bacteria in Red and Mediterranean Sea aerobic anoxygenic photosynthetic populations. Appl Environ Microbiol 71: 344–353

    PubMed  CAS  Google Scholar 

  • Peplies J, Glöckner FO, Amann R and Ludwig W (2004) Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton. Syst Appl Microbiol 27: 573–580

    PubMed  CAS  Google Scholar 

  • Pfennig N (1967) Photo synthetic bacteria. Ann Rev Microbiol 21: 285–384

    CAS  Google Scholar 

  • Pfennig N (1978) Rhodocyclus purpureus gen. nov. and sp. nov., a ring-shaped vitamin B12-requiring member of the family Rhodospirillaceae. Int J Syst Bacteriol 28: 283–288

    CAS  Google Scholar 

  • Pradella S, Allgaier M, Hoch C, Päuker O, Stackebrandt E and Wagner-Döbler I (2004) Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine Alphaproteobacteria. Appl Environ Microbiol 70: 3360–3369

    PubMed  CAS  Google Scholar 

  • Rainey FA, Silva J, Bobre MF, Silva MT and da Costa MS (2003) Porphyrobacter cryptus sp. nov., a novel slightly thermophilic, aerobic, bacteriochlorophyll a-containing species. Int J Syst Evol Microbiol 53: 35–41

    PubMed  CAS  Google Scholar 

  • Rappé MS, Connon SA, Vergin KL and Giovannoni SJ (2002) Cultivation of the ubiquitous SAR1 1 marine bacterioplankton clade. Nature 418: 630–633

    PubMed  Google Scholar 

  • Rathgeber C, Beatty JT and Yurkov V (2004) Aerobic phototrophic bacteria: new evidence for the diversity, ecological importance and applied potential of this previously overlooked group. Photosynth Res 81: 113–128

    CAS  Google Scholar 

  • Rathgeber C, Yurkova N, Stackebrandt E, Schumann P, Beatty JT and Yurkov V (2005) Roseicyclus mahoneyensis gen nov., sp. nov., an aerobic phototrophic bacterium isolated from a meromictic lake. Int J Syst Evol Microbiol 55: 1597–1603

    PubMed  CAS  Google Scholar 

  • Rathgeber C, Yurkova N, Stackebrandt E, Schumann P, Humphrey E, Beatty JT and Yurkov V (2007) Porphyrobacter meromictius sp. nov., an appendaged bacterium, that produces bacteriochlorophyll a. Curr Microbiol 55: 356–361

    PubMed  CAS  Google Scholar 

  • Rickard AH, Leach SA, Hall LS, Buswell CM, High NJ and Handley PS (2002) Phylogenetic relationships and coaggregation ability of freshwater biofilm bacteria. Appl Environ Microbiol 68: 3644–3650

    PubMed  CAS  Google Scholar 

  • Rohwerder T and Sand W (2003) The sulfane sulfur of persulfides is the actual substrate of the sulfur-oxidizing enzymes from Acidithiobacillus and Acidiphilium spp. Microbiology 149: 1699–1709

    PubMed  CAS  Google Scholar 

  • Rye R and Holland HD (1998) Paleosols and the evolution of atmospheric oxygen: A critical review. Am J Sci 298: 621–672

    PubMed  CAS  Google Scholar 

  • Salka I, Jost G, Jürgens K and Labrenz M (2006) Diversity and distribution of aerobic BChl a-producing bacteria in a depth profile of the central Baltic Sea. In: BIOspectrum Abstracts, VAAM Tagung Jena (PE42), p 142. Spektrum Akademischer Verlag GmBH, Heidelberg

    Google Scholar 

  • Schwalbach MS and Fuhrman JA (2005) Wide-ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR. Limnol Oceanogr 50: 620–628

    CAS  Google Scholar 

  • Schwarze C, Carluccio AV, Venturoli G and Labahn A (2000) Photo-induced cyclic electron transfer involving cytochrome bc 1 complex and reaction center in the obligate aerobic phototroph Roseobacter denitrificans. Eur J Biochem 267: 422–433

    PubMed  CAS  Google Scholar 

  • Shiba T, Simidu U and Taga N (1979) Distribution of aerobic bacteria which contain bacteriochlorophyll a. Appl Environ Microbiol 38: 43–45

    PubMed  CAS  Google Scholar 

  • Siebert CA, Qian P, Fotiadis D, Engel A, Hunter CN and Bullough PA (2004) Molecular architecture of photosynthetic membranes in Rhodobacter sphaeroides: the role of PufX. EMBO J 23: 690–700

    PubMed  CAS  Google Scholar 

  • Sieracki ME, Gilg IC, Their EC, Poulton NJ and Goericke R (2006) Distribution of planktonic aerobic photoheterotrophic bacteria in the northwest Atlantic. Limnol Oceanogr 51: 38–46

    Google Scholar 

  • Stackebrandt E, Frederiksen W, Garrity GM, Grimont PAD, Kämpfer P, Maiden MCJ, Nesme X, Roselló-Mora R, Swings J, Trüper HG, Vauterin L, Ward AC and Whitman WB (2002) Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52: 1043–1047

    PubMed  CAS  Google Scholar 

  • Steiner R and Scheer H (1985) Characterization of a B800/1020 antenna from the photo synthetic bacteria Ectothiorhodospia halochloris and Ectothiorhodospia abdelmalekii. Biochim BiophysActa 3: 278–284

    Google Scholar 

  • Suyama T, Shigematsu T, Suzuki T, Tokiwa Y, Kanagawa T, Nagashima KVP and Hanada S (2002) Photosynthetic apparatus in Roseateles depolymerans 61A is transcriptionally inducedby carbon limitation. Appl Environ Microbiol 68: 1665–1673

    PubMed  CAS  Google Scholar 

  • Suzuki T, Mori Y and Nishimura Y (2006) Roseibacterium elongatum gen. nov., sp. nov., an aerobic, bacteriochlorophyll-containing bacterium isolated from the west coast of Australia. Int J Syst Evol Microbiol 56: 417–421

    PubMed  CAS  Google Scholar 

  • Swingley WD, Gholba S, Mastrian SD, Matthies HJ, Hao J, Ramos H, Acharya CR, Conrad AL, Taylor HL, Dejesa LC, Shah MK, O’Huallachain ME, Lince MT, Blankenship RE, Beatty JT and Touchman JW (2007) The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic as opposed to photosynthetic metabolism. J Bacteriol 189: 683–690

    PubMed  CAS  Google Scholar 

  • Uchino Y, Hirata A, Yokota A and Sugiyama J (1998) Reclassification of marine Agrobacterium species: Proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata, sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. J Gen Appl Microbiol 44: 201–210

    PubMed  CAS  Google Scholar 

  • van Berkum P, Leibold JM and Eardly BD (2006) Proposal for combining Bradyrhizobium spp. (Aeschynomene indica) with Blastobacter denitrificans and to transfer Blastobacter denitrificans (Hirsch and Muller, 1985) to the genus Bradyrhizobium as Bradyrhizobium denitrificans (comb. nov). Syst Appl Microbiol 29: 207–215

    PubMed  Google Scholar 

  • Wagner-Döbler I and Biebl H (2006) Environmental biology of the marine Roseobacter lineage. Ann Rev Microbiol 60: 255–280

    Google Scholar 

  • Waidner LA and Kirchman DL (2005) Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River. Environ Microbiol 7: 1896–1908

    PubMed  CAS  Google Scholar 

  • Waidner LA and Kirchman DL (2007) Aerobic anoxygenic phototrophic bacteria attached to particles in turbid waters of the Delaware and Chesapeake Estuaries. Appl Environ Microbiol 73: 3936–3944

    PubMed  CAS  Google Scholar 

  • Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandier O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP and Trüper HG (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37: 463–464

    Article  Google Scholar 

  • Woese CR (1987) Bacterial evolution. Microbiol Rev 51: 221–271

    PubMed  CAS  Google Scholar 

  • Yoon J-H, Kim H, Kim I-G, Kang KH and Park Y-H (2003) Erythrobacter flavus sp. nov., a slight halophile from the East Sea in Korea. Int J Syst Evol Microbiol 53: 1169–1174

    PubMed  CAS  Google Scholar 

  • Yoon J-H, Kang KH, Oh T-K and Park Y-H (2004a) Erythrobacter aquimaris sp. nov., isolated from sea water of a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 54: 1981–1985

    PubMed  CAS  Google Scholar 

  • Yoon J-H, Lee M-H and Oh T-K (2004b) Porphyrobacter donghaensis sp. nov., isolated from sea water of the East Sea in Korea. Int J Syst Evol Microbiol 54: 2231–2235

    PubMed  CAS  Google Scholar 

  • Yoon J-H, Kang KH, Yeo S-H and Oh T-K (2005a) Erythrobacter luteolus sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 55: 1167–1170

    PubMed  CAS  Google Scholar 

  • Yoon J-H, Oh T-K and Park Y-H (2005b) Erythrobacter seohaensis sp. nov. and Erythrobacter gaetbuli sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 55: 71–75

    PubMed  CAS  Google Scholar 

  • Yoon J-H, Kang S-J, Lee M-H, Oh HW and Oh T-K (2006) Porphyrobacter dokdonensis sp. nov., isolated from sea water. Int J Syst Evol Microbiol 56: 1079–1083

    PubMed  CAS  Google Scholar 

  • Yurkov VV (2006) Aerobic phototrophic proteobacteria. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K-H and Stackebrandt E (eds) Prokaryotes (3rd Edition), Vol 5, pp 562–584. Springer-Verlag, New York

    Google Scholar 

  • Yurkov VV and Beatty JT (1998) Aerobic anoxygenic phototrophic bacteria. Microbiol Mol Biol Rev 62: 695–724

    PubMed  CAS  Google Scholar 

  • Yurkov VV and Csotonyi JT (2003) Aerobic anoxygenic phototrophs and heavy metalloid reducers from extreme environments. In: Pandalai SG (ed) Recent Research Developments in Bacteriology, Vol 1, pp 247–300. Transworld Research Network, Trivandrum

    Google Scholar 

  • Yurkov V and van Gemerden H (1993) Impact of light/dark regimen on growth rate, biomass formation and bacteriochlorophyll synthesis in Erythromicrobium hydrolyticum. Arch Microbiol 159: 84–89

    CAS  Google Scholar 

  • Yurkov VV, Krieger S, Stackebrandt E and Beatty JT (1999) Citromicrobium bathyomarinum, a novel aerobic bacterium isolated from deep-sea hydrothermal vent plume waters that contains photosynthetic pigment-protein complexes. J Bacteriol 181: 4517–4525

    PubMed  CAS  Google Scholar 

  • Yurkova N, Rathgeber C, Swiderski J, Stackebrandt E, Beatty JT, Hall KJ and Yurkov V (2002) Diversity, distribution and physiology of the aerobic phototrophic bacteria in the mixolimnion of a meromictic lake. FEMS Microbiol Ecol 40: 191–204

    CAS  PubMed  Google Scholar 

  • Yutin N and Béjà O (2005) Putative novel photosynthetic reaction centre organizations in marine aerobic anoxygenic photosynthetic bacteria: insights frommetagenomics and environmental genomics. Environ Microbiol 7: 2027–2033

    PubMed  CAS  Google Scholar 

  • Yutin N, Suzuki MT and Béjà O (2005) Novel primers reveal wider diversity among marine aerobic anoxygenic phototrophs. Appl Environ Microbiol 71: 8958–8962

    PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Vladimir Yurkov .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2009 Springer Science + Business Media B.V

About this chapter

Cite this chapter

Yurkov, V., Csotonyi, J.T. (2009). New Light on Aerobic Anoxygenic Phototrophs. In: Hunter, C.N., Daldal, F., Thurnauer, M.C., Beatty, J.T. (eds) The Purple Phototrophic Bacteria. Advances in Photosynthesis and Respiration, vol 28. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-8815-5_3

Download citation

Publish with us

Policies and ethics