Abstract
The detection of organic molecules of unambiguous biological origin is fundamental for the confirmation of present or past life. Planetary exploration requires the development of miniaturized apparatus for in situ life detection. Analytical techniques based on mass spectrometry have been traditionally used in space science. Following the Viking landers, gas chromatography-mass spectrometry (GC-MS) for organic detection has gained general acceptance and has been used successfully in the Cassini–Huygens mission to Titan. Microfluidics allows the development of miniaturized capillary electrophoresis devices for the detection of important molecules for life, like amino acids or nucleobases. Recently, a new approach is gaining acceptance in the space science community: the application of the well-known, highly specific, antibody–antigen affinity interaction for the detection and identification of organics and biochemical compounds. Antibodies can specifically bind a plethora of structurally different compounds of a broad range of molecular sizes, from amino acids level to whole cells. Antibody microarray technology allows us to look for the presence of thousands of different compounds in a single assay and in just one square centimeter. Herein, we discuss several important issues—most of which are common with other instruments dealing with life signature detection in the solar system—that must be addressed in order to use antibody microarrays for life detection and planetary exploration. These issues include (1) preservation of biomarkers, (2) the extraction techniques for biomarkers, (3) terrestrial analogues, (4) the antibody stability under space environments, (5) the selection of unequivocal biomarkers for the antibody production, or (6) the instrument design and implementation.
Keywords
- Planetary exploration
- Life-detection instruments
- Antibody microarrays
- Immunosensors
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References
J.P. Alarie, J.R. Bowyer, M.J. Sepaniak, A.M. Hoyt, T. Vo-Dinh, Anal. Chimica Acta 236, 237 (1990)
B. Allard, J. Templier, Phytochemistry 54, 369 (2000)
G.P. Anderson, S.C. Moreira, P.T. Charles, I.L. Medintz, E.R. Goldman, M. Zeinali et al., Anal. Chem. 78, 2279 (2006)
G.P. Anderson, K.D. King, K.L. Gaffney, L.H. Johnson, Biosens. Bioelectron. 14, 771 (2000)
Bada et al., Space Sci. Rev. (2007, this issue). doi:10.1007/s11214-007-9213-3
U.V. Balashova, I. Vedina, G.E. Markosyan, G.A. Zavarzin, Mikrobiologiya 43, 581 (1974)
Barron, Space Sci. Rev. (2007, this issue). doi:10.1007/s11214-007-9254-7
S.A. Benner, K.G. Devine, L.N. Matveeva, D.H. Powell, Proc. Natl. Acad. Sci. USA 97, 2425 (2000)
E. Bjorklund, T. Nilsson, S. Bøwadt, Trends Anal. Chem. 19, 434 (2000)
E.T. Boder, K.S. Midelfort, K.D. Wittrup, Proc. Natl. Acad. Sci. USA 97, 10701 (2000)
E.D. Breen, J.G. Curley, D.E. Overcashier, C.C. Hsu, S.J. Shire, Pharm. Res. 18, 1345 (2001)
J.J. Brocks, G.A. Logan, R. Buick, R.E. Summons, Science 285, 1033 (1999)
J.J. Brocks, R.E. Summons, R. Buick, G.A. Logan, Org. Geochem. 34, 1161 (2003)
R.E. Buchanan, N.E. Gibbons (eds.), Bergey’s Manual of Determinative Bacteriology, 8th edn. (The Williams & Wilkens Co., Baltimore, 1974)
G. Campistron, R.M. Buijs, M. Geffard, Brain Res. 376, 400 (1986)
L.L. Chang, D. Shepherd, J. Sun, D. Ouellette, K.L. Grant, X.C. Tang et al., J. Pharm. Sci. 94, 1427 (2005)
C.S. Chen, H. Zhu, Biotechniques 40, 423 (2006)
Y. Chen, C. Wiesmann, G. Fuh, B. Li, H.W. Christinger, P. McKay et al., J. Mol. Biol. 293, 865 (1999)
J.R. Collett, E.J. Cho, A.D. Ellington, Methods 37, 4 (2005)
G. Cooper, N. Kimmich, W. Belisle, J. Sarinana, K. Brabham, L. Garrel, Nature 414, 879 (2001)
Eigenbrode, Summons, Space Sci. Rev. (2007, this volume). doi:10.1007/s11214-007-9252-9
P. Fernández-Calvo, C. Näke, L.A. Rivas, M. García-Villadangos, J. Gómez-Elvira, V. Parro, Planet. Space Sci. 54, 1612 (2006)
D. Fernández-Remolar, J. Gómez-Elvira, F. Gómez, E. Sebastian, J. Martín, J.A. Manfredi et al., Planet. Space Sci. 52, 239 (2004)
D.C. Fernández-Remolar, R.V. Morris, J.E. Gruener, R. Amils, A.H. Knoll, Earth Planet. Sci. Lett. 240, 149 (2005)
D. Fernández-Remolar, O. Prieto-Ballesteros, N. Rodríguez, F. Gómez, R. Amils, J. Gómez-Elvira, C. Stoker, Astrobiology (2007, in press)
G.J. Flynn, Earth, Moon Planets 72, 469 (1996)
A. Geiger, P. Burgstaller, H. von der Eltz, A. Roeder, M. Famulok, Nucl. Acids Res. 24, 1029 (1996)
J. Golden, L. Shriver-Lake, K. Sapsford, F. Ligler, Methods 37, 65 (2005)
M.A. Gonzalez-Martinez, J. Penalva, J.C. Rodriguez-Urbis, E. Brunet, A. Maquieira, R. Puchades, Anal. Bioanal. Chem. 384, 1540 (2006)
E. González-Toril, E. Llobet-Brossa, E.O. Casamayor, R. Amann, R. Amils, Appl. Environ. Microbiol. 69, 4853 (2003)
M. Hansson, J. Ringdahl, A. Robert, U. Power, L. Goetsch, T.N. Nguyen et al., Immunotechnology 4, 237 (1999)
M. Hiasa, Y. Moriyama, Biol. Pharm. Bull. 29, 1251 (2006)
J. Hogan, Nature 437, 1080 (2005)
L.D. Hutt, D.P. Glavin, J.L. Bada, R.A. Mathies, Anal. Chem. 71, 4000 (1999)
G. Israël, C. Szopa, F. Raulin, M. Cabane, H.B. Niemann, S.K. Atreya et al., Nature 438, 796 (2005)
D.S. Junior, F.J. Krug, M. de Godoi Pereira, M. Korn, Appl. Spectrosc. Rev. 41, 305 (2006)
M. Kempe, Lett. Pept. Sci. 7 (2000)
K. Kierek-Pearson, E. Karatan, Adv. Appl. Microbiol. 57, 79 (2005)
G. Klingelhofer, R.V. Morris, B. Bernhardt, C. Schroder, D.S. Rodionov, P.A. de Souza, Jr. et al., Science 1740, 306 (2004)
G. Kminek, J.L. Bada, Earth Planet. Sci. Lett. 245, 1 (2006)
W. Kusnezow, A. Jacob, A. Walijew, F. Diehl, J.D. Hoheisel, Proteomics 3, 254 (2003)
W. Liao, S. Guo, X.S. Zhao, Front. Biosci. 11, 186 (2006)
F.S. Ligler, C.R. Taitt, L.C. Shriver-Lake, K.E. Sapsford, Y. Shubin, J.P. Golden, Anal. Bioanal. Chem. 377, 469 (2003)
P.B. Luppa, L.J. Sokoll, D.W. Chan, Clin. Chimica Acta 314, 1–26 (2001)
M.D. Luque de Castro, L.E. Garcia-Ayuso, Anal. Chimica Acta 369, 1 (1998)
M.E. Mackintosh, J. Gen. Microbiol. 105, 215 (1978)
Mahaffy, Space Sci. Rev. (2007, this issue). doi:10.1007/s11214-007-9223-1
E. Mallat, D. Barceló, C. Barzen, G. Gauglitz, R. Abuknesha, Trends Anal. Chem. 20, 124 (2001a)
E. Mallat, C. Barzen, R. Abuknesha, G. Gauglitz, D. Barceló, Anal. Chimica Acta 426, 209 (2001b)
C.A. Marquette, L.J. Blum, Biosens. Bioelectron. 21, 1424 (2006)
J. Masarova, E.S. Dey, B. Danielsson, Pol. J. Microbiol. 53, 23 (2004)
J. Maule, M. Fogel, A. Steele, N. Wainwright, D.L. Pierson, D.S. McKay, J. Gravit. Physiol. 10, 47 (2003)
G.D. McDonald, E. De Vanssay, J.R. Buckley, Icarus 132, 170 (1998)
R. Navarro-González, F.A. Rainey, P. Molina, D.R. Bagaley, B.J. Hollen, J. de la Rosa et al., Science 302, 1018 (2003)
Y.M. Newman, S.G. Ring, C. Colaco, Biotechnol. Genet. Eng. Rev. 11, 263 (1993)
H.B. Niemann, S.K. Atreya, S.J. Bauer, G.R. Carignan, J.E. Demick, R.L. Frost et al., Nature 438, 779–84 (2005)
P.R. Norris, J.C. Murrell, D. Hinson, Arch. Microbiol. 164, 294 (1995)
N. Ohmura, K. Sasaki, N. Matsumoto, H. Saiki, J. Bacteriol. 184, 2081 (2002)
J. Oro, G. Holzer, J. Mol. Evol. 14, 153 (1979)
J. Oró, Nature 190, 389 (1961)
J. Parellada, A. Narváez, M.A. López, E. Domínguez, J.J. Fernández, V. Pavlov et al., Anal. Chimica Acta 362, 47 (1998)
J. Parnell, D. Cullen, M.R. Sims, S. Bowden, C.S. Cockell, R. Court et al., Astrobiology 7, 578 (2007)
V. Parro, M. Moreno-Paz, Proc. Natl. Acad. Sci. USA 100, 7883 (2003)
V. Parro, J.A. Rodríguez-Manfredi, C. Briones, C. Compostizo, P.L. Herrero, E. Vez et al., Planet. Space Sci. 53, 729 (2005)
V. Parro, P. Fernández-Calvo, J.A. Rodríguez Manfredi, M. Moreno-Paz, L.A. Rivas, M. García-Villadangos et al., Astrobiology (2007, in press)
S. Pizzarello, X. Feng, S. Epstein, J.R. Cronin, Geochimica Cosmochimica Acta 58, 5579 (1994)
F.L. Plows, J.E. Elsila, R.N. Zare, P.R. Buseck, Geochimica Cosmochimica Acta 67, 1429 (2003)
R.C. Quinn, A.P. Zent, F.J. Grunthaner, P. Ehrenfreund, C.L. Taylor, J.R.C. Garry, Planet. Space Sci. 53, 1376 (2005)
O. Ramström, M. Yan, Molecularly Imprinted Materials: Science and Technology (Marcer Dekker/CRC Press, New York, 2004)
P. Rathanaswami, S. Roalstad, L. Roskos, Q.J. Su, S. Lackie, J. Babcook, Biochem. Biophys. Res. Commun. 334, 1004 (2005)
B. Renberg, J. Nordin, A. Merca, M. Uhlen, J. Feldwisch, P.A. Nygren et al., J. Proteome Res. 6, 171 (2007)
S. Rodriguez-Mozaz, M.J. Lopez de Alda, D. Barcelo, Anal. Bioanal. Chem. 386, 1025 (2006)
S. Rodríguez-Mozaz, M.J. López de Alda, M.P. Marco, D. Barceló, Talanta 65, 291 (2005)
S. Rodríguez-Mozaz, M.P. Marco, M.J. López de Alda, D. Barceló, Anal. Bioanal. Chem. 378, 588 (2004a)
S. Rodríguez-Mozaz, S. Reder, M.J. López de Alda, G. Gauglitz, D. Barceló, Biosens. Bioelectron. 19, 633 (2004b)
K.E. Sapsford, P.T. Charles, C.H. Patterson Jr., F.S. Ligler, Anal. Chem. 74, 1061 (2002)
K.E. Sapsford, Y.S. Shubin, J.B. Delehanty, J.P. Golden, C.R. Taitt, L.C. Shriver-Lake et al., J. Appl. Microbiol. 96, 47 (2004)
M.H. Schweitzer, J. Wittmeyer, R. Avci, S. Pincus, Astrobiology 5, 30 (2005a)
M.H. Schweitzer, J.L. Wittmeyer, J.R. Horner, J.K. Toporski, Science 307, 1952 (2005b)
M.A. Sephton, C.T. Pillinger, I. Gilmour, Geochimica Cosmochimica Acta 62, 1821 (1998)
D. Shabat, H. Itzhaky, J.L. Reymond, E. Keinan, Nature 374, 143 (1995)
H. Silvaieh, M.G. Schmid, O. Hofstetter, V. Schurig, G. Gubitz, J. Biochem. Biophys. Methods 53, 1 (2002)
M.R. Sims, D.C. Cullen, N.P. Bannister, W.D. Grant, O. Henry, R. Jones et al., Planet. Space Sci. 53, 781 (2005)
A.M. Skelley, H.J. Cleaves, C.N. Jayarajah, J.L. Bada, R.A. Mathies, Astrobiology 6, 824 (2006)
A.M. Skelley, J.R. Scherer, A.D. Aubrey, W.H. Grover, R.H. Ivester, P. Ehrenfreund et al., Proc. Natl. Acad. Sci. USA 102, 1041 (2005)
C. Stoker, LPS XXXIV, 1076 (2003)
C.R. Stoker, M.A. Bullock, J. Geophys. Res. 102, 10881 (1997)
C. Stoker, S. Dunagan, T.O. Stevens, R. Amils, J. Gómez-Elvira, D. Fernández et al., LPS XXXV, 2025 (2004)
C. Stoker, H. Cannon, S. Dunagan, L.G. Lemke, D. Miller, J. Gómez-Elvira et al., Astrobiology (2007, in press)
Summons et al., Space Sci. Rev. (2007, this issue). doi:10.1007/s11214-007-9256-5
C.R. Taitt, J.P. Golden, Y.S. Shubin, L.C. Shriver-Lake, K.E. Sapsford, A. Rasooly, F.S. Ligler, Microb. Ecol. 47, 175 (2004)
D.P. Thompson, P.K. Wilson, M.R. Sims, D.C. Cullen, J.M. Holt, D.J. Parker et al., Anal. Chem. 78, 2738 (2006)
J. Tschmelak, G. Proll, J. Riedt, J. Kaiser, P. Kraemmer, L. Barzaga et al., Biosens. Bioelectron. 20, 1509 (2005a)
J. Tschmelak, G. Proll, J. Riedt, J. Kaiser, P. Kraemmer, L. Barzaga et al., Biosens. Bioelectron. 20, 1499 (2005b)
N. Tuross, L. Stathoplos, Meth. Enzymol. 224, 121 (1993)
J.M. Van Emon, V. Lopez-Avila, Anal. Chem. 64, 79A (1992)
E. Vorobyova, V. Soina, M. Gorlenko, N. Zalinuva, A. Mamukelashvili, D. Gilichinsky et al., FEMS Microbiol. Rev. 20, 277 (1997)
R.M. Wadkins, J.P. Golden, F.S. Ligler, J. Biomed. Optics 2, 74 (1997)
M.G. Weller, A.J. Schuetz, M. Winklmair, R. Niessner, Anal. Chimica Acta 393, 29 (1999)
M.G. Weller, Protein Microarrays (Jones and Bartlett Publishers, Sudbury, 2005) p. 285
J. Whitfield, Nature 430, 288 (2004)
R. Wiese, Y. Belosludtsev, T. Powdrill, P. Thompson, M. Hogan, Clin. Chem. 47, 1451 (2001)
M.K. Wong, W. Gu, T.L. Ng, Anal. Sci. 13, 97 (1997)
X.Q. Zhang, P.L. Bishop, M.J. Kupferle, Water Sci. Technol. 37, 345 (1998)
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Parro, V., Rivas, L.A., Gómez-Elvira, J. (2008). Protein Microarrays-Based Strategies for Life Detection in Astrobiology. In: Botta, O., Bada, J.L., Gomez-Elvira, J., Javaux, E., Selsis, F., Summons, R. (eds) Strategies of Life Detection. Space Sciences Series of ISSI, vol 25. Springer, Boston, MA. https://doi.org/10.1007/978-0-387-77516-6_21
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