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Protein Microarrays-Based Strategies for Life Detection in Astrobiology

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Part of the Space Sciences Series of ISSI book series (SSSI,volume 25)

Abstract

The detection of organic molecules of unambiguous biological origin is fundamental for the confirmation of present or past life. Planetary exploration requires the development of miniaturized apparatus for in situ life detection. Analytical techniques based on mass spectrometry have been traditionally used in space science. Following the Viking landers, gas chromatography-mass spectrometry (GC-MS) for organic detection has gained general acceptance and has been used successfully in the Cassini–Huygens mission to Titan. Microfluidics allows the development of miniaturized capillary electrophoresis devices for the detection of important molecules for life, like amino acids or nucleobases. Recently, a new approach is gaining acceptance in the space science community: the application of the well-known, highly specific, antibody–antigen affinity interaction for the detection and identification of organics and biochemical compounds. Antibodies can specifically bind a plethora of structurally different compounds of a broad range of molecular sizes, from amino acids level to whole cells. Antibody microarray technology allows us to look for the presence of thousands of different compounds in a single assay and in just one square centimeter. Herein, we discuss several important issues—most of which are common with other instruments dealing with life signature detection in the solar system—that must be addressed in order to use antibody microarrays for life detection and planetary exploration. These issues include (1) preservation of biomarkers, (2) the extraction techniques for biomarkers, (3) terrestrial analogues, (4) the antibody stability under space environments, (5) the selection of unequivocal biomarkers for the antibody production, or (6) the instrument design and implementation.

Keywords

  • Planetary exploration
  • Life-detection instruments
  • Antibody microarrays
  • Immunosensors

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References

  • J.P. Alarie, J.R. Bowyer, M.J. Sepaniak, A.M. Hoyt, T. Vo-Dinh, Anal. Chimica Acta 236, 237 (1990)

    CrossRef  Google Scholar 

  • B. Allard, J. Templier, Phytochemistry 54, 369 (2000)

    CrossRef  Google Scholar 

  • G.P. Anderson, S.C. Moreira, P.T. Charles, I.L. Medintz, E.R. Goldman, M. Zeinali et al., Anal. Chem. 78, 2279 (2006)

    CrossRef  Google Scholar 

  • G.P. Anderson, K.D. King, K.L. Gaffney, L.H. Johnson, Biosens. Bioelectron. 14, 771 (2000)

    CrossRef  Google Scholar 

  • Bada et al., Space Sci. Rev. (2007, this issue). doi:10.1007/s11214-007-9213-3

    Google Scholar 

  • U.V. Balashova, I. Vedina, G.E. Markosyan, G.A. Zavarzin, Mikrobiologiya 43, 581 (1974)

    Google Scholar 

  • Barron, Space Sci. Rev. (2007, this issue). doi:10.1007/s11214-007-9254-7

  • S.A. Benner, K.G. Devine, L.N. Matveeva, D.H. Powell, Proc. Natl. Acad. Sci. USA 97, 2425 (2000)

    CrossRef  ADS  Google Scholar 

  • E. Bjorklund, T. Nilsson, S. Bøwadt, Trends Anal. Chem. 19, 434 (2000)

    CrossRef  Google Scholar 

  • E.T. Boder, K.S. Midelfort, K.D. Wittrup, Proc. Natl. Acad. Sci. USA 97, 10701 (2000)

    CrossRef  ADS  Google Scholar 

  • E.D. Breen, J.G. Curley, D.E. Overcashier, C.C. Hsu, S.J. Shire, Pharm. Res. 18, 1345 (2001)

    CrossRef  Google Scholar 

  • J.J. Brocks, G.A. Logan, R. Buick, R.E. Summons, Science 285, 1033 (1999)

    CrossRef  Google Scholar 

  • J.J. Brocks, R.E. Summons, R. Buick, G.A. Logan, Org. Geochem. 34, 1161 (2003)

    CrossRef  Google Scholar 

  • R.E. Buchanan, N.E. Gibbons (eds.), Bergey’s Manual of Determinative Bacteriology, 8th edn. (The Williams & Wilkens Co., Baltimore, 1974)

    Google Scholar 

  • G. Campistron, R.M. Buijs, M. Geffard, Brain Res. 376, 400 (1986)

    CrossRef  Google Scholar 

  • L.L. Chang, D. Shepherd, J. Sun, D. Ouellette, K.L. Grant, X.C. Tang et al., J. Pharm. Sci. 94, 1427 (2005)

    CrossRef  Google Scholar 

  • C.S. Chen, H. Zhu, Biotechniques 40, 423 (2006)

    CrossRef  Google Scholar 

  • Y. Chen, C. Wiesmann, G. Fuh, B. Li, H.W. Christinger, P. McKay et al., J. Mol. Biol. 293, 865 (1999)

    CrossRef  Google Scholar 

  • J.R. Collett, E.J. Cho, A.D. Ellington, Methods 37, 4 (2005)

    CrossRef  Google Scholar 

  • G. Cooper, N. Kimmich, W. Belisle, J. Sarinana, K. Brabham, L. Garrel, Nature 414, 879 (2001)

    CrossRef  ADS  Google Scholar 

  • Eigenbrode, Summons, Space Sci. Rev. (2007, this volume). doi:10.1007/s11214-007-9252-9

  • P. Fernández-Calvo, C. Näke, L.A. Rivas, M. García-Villadangos, J. Gómez-Elvira, V. Parro, Planet. Space Sci. 54, 1612 (2006)

    CrossRef  ADS  Google Scholar 

  • D. Fernández-Remolar, J. Gómez-Elvira, F. Gómez, E. Sebastian, J. Martín, J.A. Manfredi et al., Planet. Space Sci. 52, 239 (2004)

    CrossRef  ADS  Google Scholar 

  • D.C. Fernández-Remolar, R.V. Morris, J.E. Gruener, R. Amils, A.H. Knoll, Earth Planet. Sci. Lett. 240, 149 (2005)

    CrossRef  ADS  Google Scholar 

  • D. Fernández-Remolar, O. Prieto-Ballesteros, N. Rodríguez, F. Gómez, R. Amils, J. Gómez-Elvira, C. Stoker, Astrobiology (2007, in press)

    Google Scholar 

  • G.J. Flynn, Earth, Moon Planets 72, 469 (1996)

    CrossRef  ADS  Google Scholar 

  • A. Geiger, P. Burgstaller, H. von der Eltz, A. Roeder, M. Famulok, Nucl. Acids Res. 24, 1029 (1996)

    CrossRef  Google Scholar 

  • J. Golden, L. Shriver-Lake, K. Sapsford, F. Ligler, Methods 37, 65 (2005)

    CrossRef  Google Scholar 

  • M.A. Gonzalez-Martinez, J. Penalva, J.C. Rodriguez-Urbis, E. Brunet, A. Maquieira, R. Puchades, Anal. Bioanal. Chem. 384, 1540 (2006)

    CrossRef  Google Scholar 

  • E. González-Toril, E. Llobet-Brossa, E.O. Casamayor, R. Amann, R. Amils, Appl. Environ. Microbiol. 69, 4853 (2003)

    CrossRef  Google Scholar 

  • M. Hansson, J. Ringdahl, A. Robert, U. Power, L. Goetsch, T.N. Nguyen et al., Immunotechnology 4, 237 (1999)

    CrossRef  Google Scholar 

  • M. Hiasa, Y. Moriyama, Biol. Pharm. Bull. 29, 1251 (2006)

    CrossRef  Google Scholar 

  • J. Hogan, Nature 437, 1080 (2005)

    CrossRef  ADS  Google Scholar 

  • L.D. Hutt, D.P. Glavin, J.L. Bada, R.A. Mathies, Anal. Chem. 71, 4000 (1999)

    CrossRef  Google Scholar 

  • G. Israël, C. Szopa, F. Raulin, M. Cabane, H.B. Niemann, S.K. Atreya et al., Nature 438, 796 (2005)

    CrossRef  ADS  Google Scholar 

  • D.S. Junior, F.J. Krug, M. de Godoi Pereira, M. Korn, Appl. Spectrosc. Rev. 41, 305 (2006)

    CrossRef  ADS  Google Scholar 

  • M. Kempe, Lett. Pept. Sci. 7 (2000)

    Google Scholar 

  • K. Kierek-Pearson, E. Karatan, Adv. Appl. Microbiol. 57, 79 (2005)

    CrossRef  Google Scholar 

  • G. Klingelhofer, R.V. Morris, B. Bernhardt, C. Schroder, D.S. Rodionov, P.A. de Souza, Jr. et al., Science 1740, 306 (2004)

    Google Scholar 

  • G. Kminek, J.L. Bada, Earth Planet. Sci. Lett. 245, 1 (2006)

    CrossRef  ADS  Google Scholar 

  • W. Kusnezow, A. Jacob, A. Walijew, F. Diehl, J.D. Hoheisel, Proteomics 3, 254 (2003)

    CrossRef  Google Scholar 

  • W. Liao, S. Guo, X.S. Zhao, Front. Biosci. 11, 186 (2006)

    CrossRef  Google Scholar 

  • F.S. Ligler, C.R. Taitt, L.C. Shriver-Lake, K.E. Sapsford, Y. Shubin, J.P. Golden, Anal. Bioanal. Chem. 377, 469 (2003)

    CrossRef  Google Scholar 

  • P.B. Luppa, L.J. Sokoll, D.W. Chan, Clin. Chimica Acta 314, 1–26 (2001)

    CrossRef  Google Scholar 

  • M.D. Luque de Castro, L.E. Garcia-Ayuso, Anal. Chimica Acta 369, 1 (1998)

    CrossRef  Google Scholar 

  • M.E. Mackintosh, J. Gen. Microbiol. 105, 215 (1978)

    Google Scholar 

  • Mahaffy, Space Sci. Rev. (2007, this issue). doi:10.1007/s11214-007-9223-1

  • E. Mallat, D. Barceló, C. Barzen, G. Gauglitz, R. Abuknesha, Trends Anal. Chem. 20, 124 (2001a)

    CrossRef  Google Scholar 

  • E. Mallat, C. Barzen, R. Abuknesha, G. Gauglitz, D. Barceló, Anal. Chimica Acta 426, 209 (2001b)

    CrossRef  Google Scholar 

  • C.A. Marquette, L.J. Blum, Biosens. Bioelectron. 21, 1424 (2006)

    CrossRef  Google Scholar 

  • J. Masarova, E.S. Dey, B. Danielsson, Pol. J. Microbiol. 53, 23 (2004)

    Google Scholar 

  • J. Maule, M. Fogel, A. Steele, N. Wainwright, D.L. Pierson, D.S. McKay, J. Gravit. Physiol. 10, 47 (2003)

    Google Scholar 

  • G.D. McDonald, E. De Vanssay, J.R. Buckley, Icarus 132, 170 (1998)

    CrossRef  ADS  Google Scholar 

  • R. Navarro-González, F.A. Rainey, P. Molina, D.R. Bagaley, B.J. Hollen, J. de la Rosa et al., Science 302, 1018 (2003)

    CrossRef  ADS  Google Scholar 

  • Y.M. Newman, S.G. Ring, C. Colaco, Biotechnol. Genet. Eng. Rev. 11, 263 (1993)

    Google Scholar 

  • H.B. Niemann, S.K. Atreya, S.J. Bauer, G.R. Carignan, J.E. Demick, R.L. Frost et al., Nature 438, 779–84 (2005)

    CrossRef  ADS  Google Scholar 

  • P.R. Norris, J.C. Murrell, D. Hinson, Arch. Microbiol. 164, 294 (1995)

    CrossRef  Google Scholar 

  • N. Ohmura, K. Sasaki, N. Matsumoto, H. Saiki, J. Bacteriol. 184, 2081 (2002)

    CrossRef  Google Scholar 

  • J. Oro, G. Holzer, J. Mol. Evol. 14, 153 (1979)

    CrossRef  ADS  Google Scholar 

  • J. Oró, Nature 190, 389 (1961)

    CrossRef  ADS  Google Scholar 

  • J. Parellada, A. Narváez, M.A. López, E. Domínguez, J.J. Fernández, V. Pavlov et al., Anal. Chimica Acta 362, 47 (1998)

    CrossRef  Google Scholar 

  • J. Parnell, D. Cullen, M.R. Sims, S. Bowden, C.S. Cockell, R. Court et al., Astrobiology 7, 578 (2007)

    CrossRef  ADS  Google Scholar 

  • V. Parro, M. Moreno-Paz, Proc. Natl. Acad. Sci. USA 100, 7883 (2003)

    CrossRef  ADS  Google Scholar 

  • V. Parro, J.A. Rodríguez-Manfredi, C. Briones, C. Compostizo, P.L. Herrero, E. Vez et al., Planet. Space Sci. 53, 729 (2005)

    CrossRef  ADS  Google Scholar 

  • V. Parro, P. Fernández-Calvo, J.A. Rodríguez Manfredi, M. Moreno-Paz, L.A. Rivas, M. García-Villadangos et al., Astrobiology (2007, in press)

    Google Scholar 

  • S. Pizzarello, X. Feng, S. Epstein, J.R. Cronin, Geochimica Cosmochimica Acta 58, 5579 (1994)

    CrossRef  ADS  Google Scholar 

  • F.L. Plows, J.E. Elsila, R.N. Zare, P.R. Buseck, Geochimica Cosmochimica Acta 67, 1429 (2003)

    CrossRef  ADS  Google Scholar 

  • R.C. Quinn, A.P. Zent, F.J. Grunthaner, P. Ehrenfreund, C.L. Taylor, J.R.C. Garry, Planet. Space Sci. 53, 1376 (2005)

    CrossRef  ADS  Google Scholar 

  • O. Ramström, M. Yan, Molecularly Imprinted Materials: Science and Technology (Marcer Dekker/CRC Press, New York, 2004)

    Google Scholar 

  • P. Rathanaswami, S. Roalstad, L. Roskos, Q.J. Su, S. Lackie, J. Babcook, Biochem. Biophys. Res. Commun. 334, 1004 (2005)

    CrossRef  Google Scholar 

  • B. Renberg, J. Nordin, A. Merca, M. Uhlen, J. Feldwisch, P.A. Nygren et al., J. Proteome Res. 6, 171 (2007)

    CrossRef  Google Scholar 

  • S. Rodriguez-Mozaz, M.J. Lopez de Alda, D. Barcelo, Anal. Bioanal. Chem. 386, 1025 (2006)

    CrossRef  Google Scholar 

  • S. Rodríguez-Mozaz, M.J. López de Alda, M.P. Marco, D. Barceló, Talanta 65, 291 (2005)

    Google Scholar 

  • S. Rodríguez-Mozaz, M.P. Marco, M.J. López de Alda, D. Barceló, Anal. Bioanal. Chem. 378, 588 (2004a)

    CrossRef  Google Scholar 

  • S. Rodríguez-Mozaz, S. Reder, M.J. López de Alda, G. Gauglitz, D. Barceló, Biosens. Bioelectron. 19, 633 (2004b)

    CrossRef  Google Scholar 

  • K.E. Sapsford, P.T. Charles, C.H. Patterson Jr., F.S. Ligler, Anal. Chem. 74, 1061 (2002)

    CrossRef  Google Scholar 

  • K.E. Sapsford, Y.S. Shubin, J.B. Delehanty, J.P. Golden, C.R. Taitt, L.C. Shriver-Lake et al., J. Appl. Microbiol. 96, 47 (2004)

    CrossRef  Google Scholar 

  • M.H. Schweitzer, J. Wittmeyer, R. Avci, S. Pincus, Astrobiology 5, 30 (2005a)

    CrossRef  ADS  Google Scholar 

  • M.H. Schweitzer, J.L. Wittmeyer, J.R. Horner, J.K. Toporski, Science 307, 1952 (2005b)

    CrossRef  ADS  Google Scholar 

  • M.A. Sephton, C.T. Pillinger, I. Gilmour, Geochimica Cosmochimica Acta 62, 1821 (1998)

    CrossRef  ADS  Google Scholar 

  • D. Shabat, H. Itzhaky, J.L. Reymond, E. Keinan, Nature 374, 143 (1995)

    CrossRef  ADS  Google Scholar 

  • H. Silvaieh, M.G. Schmid, O. Hofstetter, V. Schurig, G. Gubitz, J. Biochem. Biophys. Methods 53, 1 (2002)

    CrossRef  Google Scholar 

  • M.R. Sims, D.C. Cullen, N.P. Bannister, W.D. Grant, O. Henry, R. Jones et al., Planet. Space Sci. 53, 781 (2005)

    CrossRef  ADS  Google Scholar 

  • A.M. Skelley, H.J. Cleaves, C.N. Jayarajah, J.L. Bada, R.A. Mathies, Astrobiology 6, 824 (2006)

    CrossRef  ADS  Google Scholar 

  • A.M. Skelley, J.R. Scherer, A.D. Aubrey, W.H. Grover, R.H. Ivester, P. Ehrenfreund et al., Proc. Natl. Acad. Sci. USA 102, 1041 (2005)

    CrossRef  ADS  Google Scholar 

  • C. Stoker, LPS XXXIV, 1076 (2003)

    ADS  Google Scholar 

  • C.R. Stoker, M.A. Bullock, J. Geophys. Res. 102, 10881 (1997)

    CrossRef  ADS  Google Scholar 

  • C. Stoker, S. Dunagan, T.O. Stevens, R. Amils, J. Gómez-Elvira, D. Fernández et al., LPS XXXV, 2025 (2004)

    ADS  Google Scholar 

  • C. Stoker, H. Cannon, S. Dunagan, L.G. Lemke, D. Miller, J. Gómez-Elvira et al., Astrobiology (2007, in press)

    Google Scholar 

  • Summons et al., Space Sci. Rev. (2007, this issue). doi:10.1007/s11214-007-9256-5

  • C.R. Taitt, J.P. Golden, Y.S. Shubin, L.C. Shriver-Lake, K.E. Sapsford, A. Rasooly, F.S. Ligler, Microb. Ecol. 47, 175 (2004)

    CrossRef  Google Scholar 

  • D.P. Thompson, P.K. Wilson, M.R. Sims, D.C. Cullen, J.M. Holt, D.J. Parker et al., Anal. Chem. 78, 2738 (2006)

    CrossRef  Google Scholar 

  • J. Tschmelak, G. Proll, J. Riedt, J. Kaiser, P. Kraemmer, L. Barzaga et al., Biosens. Bioelectron. 20, 1509 (2005a)

    CrossRef  Google Scholar 

  • J. Tschmelak, G. Proll, J. Riedt, J. Kaiser, P. Kraemmer, L. Barzaga et al., Biosens. Bioelectron. 20, 1499 (2005b)

    CrossRef  Google Scholar 

  • N. Tuross, L. Stathoplos, Meth. Enzymol. 224, 121 (1993)

    CrossRef  Google Scholar 

  • J.M. Van Emon, V. Lopez-Avila, Anal. Chem. 64, 79A (1992)

    CrossRef  Google Scholar 

  • E. Vorobyova, V. Soina, M. Gorlenko, N. Zalinuva, A. Mamukelashvili, D. Gilichinsky et al., FEMS Microbiol. Rev. 20, 277 (1997)

    CrossRef  Google Scholar 

  • R.M. Wadkins, J.P. Golden, F.S. Ligler, J. Biomed. Optics 2, 74 (1997)

    CrossRef  ADS  Google Scholar 

  • M.G. Weller, A.J. Schuetz, M. Winklmair, R. Niessner, Anal. Chimica Acta 393, 29 (1999)

    CrossRef  Google Scholar 

  • M.G. Weller, Protein Microarrays (Jones and Bartlett Publishers, Sudbury, 2005) p. 285

    Google Scholar 

  • J. Whitfield, Nature 430, 288 (2004)

    CrossRef  ADS  Google Scholar 

  • R. Wiese, Y. Belosludtsev, T. Powdrill, P. Thompson, M. Hogan, Clin. Chem. 47, 1451 (2001)

    Google Scholar 

  • M.K. Wong, W. Gu, T.L. Ng, Anal. Sci. 13, 97 (1997)

    CrossRef  Google Scholar 

  • X.Q. Zhang, P.L. Bishop, M.J. Kupferle, Water Sci. Technol. 37, 345 (1998)

    CrossRef  Google Scholar 

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Parro, V., Rivas, L.A., Gómez-Elvira, J. (2008). Protein Microarrays-Based Strategies for Life Detection in Astrobiology. In: Botta, O., Bada, J.L., Gomez-Elvira, J., Javaux, E., Selsis, F., Summons, R. (eds) Strategies of Life Detection. Space Sciences Series of ISSI, vol 25. Springer, Boston, MA. https://doi.org/10.1007/978-0-387-77516-6_21

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