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Construction and Application Based on Compressing Depiction in Profile Hidden Markov Model

  • Zhijian Zhou
  • Daoliang Li
  • Li Li
  • Zetian Fu
Part of the The International Federation for Information Processing book series (IFIPAICT, volume 259)

A method to express Profile Hidden Markov Model (Profile HMM) parameters with compressing matrix is presented, which is obtained by imposing the characteristics of both the state transfer and the character output in the Profile HMM.

Keywords

Profile HMM Multiple sequence alignment Bioinformatics 

References

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Copyright information

© IFIP International Federation for Information Processing 2008

Authors and Affiliations

  • Zhijian Zhou
    • 1
  • Daoliang Li
    • 2
  • Li Li
    • 2
  • Zetian Fu
    • 2
  1. 1.College of ScienceChina Agricultural UniversityChina
  2. 2.College of Information and Electrical EngineeringChina Agricultural UniversityChina

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