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In vitro Analysis of Ribozyme-mediated Knockdown of an ADRP Associated Rhodopsin Mutation

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Recent Advances in Retinal Degeneration

Part of the book series: Advances in Experimental Medicine and Biology ((AEMB,volume 613))

Retinitis Pigmentosa (RP) is a group of retinal degenerative diseases that are characterized mainly by the loss of rod photoreceptor cells. RP can be sub divided into 3 classes, autosomal dominant, autosomal recessive, and X- linked RP, where the mutant gene exists on the sex chromosome (X) (Hartong et al., 2006; Wang et al., 2005). Mutations in rhodopsin are the most common cause of the autosomaldominant form of RP (ADRP). More than 100 mutations in rhodopsin account for approximately 30 of ADRP cases with varying severity of visual impairment (Dryja et al., 1991). Based on in vitro studies (Sung et al., 1993; Sung et al., 1991), rhodopsin mutations that are similar to wild-type in terms of expression levels, folding and formation of functional photopigment are considered Class 1 mutations.

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References

  • Blake, K. R., Murakami, A., and Miller, P. S., 1985, Inhibition of rabbit globin mRNA translation by sequence-pecific oligodeoxyribonucleotides, Biochemistry. 24:6132.

    Article  PubMed  CAS  Google Scholar 

  • Bumcrot, D., Manoharan, M., Koteliansky, V., and Sah, D. W., 2006, RNAi therapeutics: a potential new class of pharmaceutical drugs, Nat Chem Biol. 2:711

    Article  PubMed  CAS  Google Scholar 

  • Cashman, S. M., Binkley, E. A., and Kumar-Singh, R.,2005, Towards mutation-independent silencing of genes involved in retinal degeneration by RNA interference, Gene Ther. 12:1223.

    Article  PubMed  CAS  Google Scholar 

  • Drenser, K. A., Timmers, A. M., Hauswirth, W. W., and Lewin, A. S.,1998, Ribozyme-targeted destruction of RNA associated with autosomal-dominant retinitis pigmentosa, Invest Ophthalmol Vis Sci. 39:681.

    PubMed  CAS  Google Scholar 

  • Dryja, T. P., Hahn, L. B., Cowley, G. S., McGee, T. L., and Berson, E. L., 1991, Mutation spectrum of the rhodopsin gene among patients with autosomal dominant retinitis pigmentosa, Proc Natl Acad Sci U S A. 88:9370.

    Article  PubMed  CAS  Google Scholar 

  • Dryja, T. P., McGee, T. L., Hahn, L. B., Cowley, G. S., Olsson, J. E., Reichel, E., Sandberg, M. A., and Berson, E. L., 1990, Mutations within the rhodopsin gene in patients with autosomal dominant retinitis pigmentosa, N Engl J Med. 323:1302.

    Article  PubMed  CAS  Google Scholar 

  • Esteban, J. A., Walter, N. G., Kotzorek, G., Heckman, J. E., and Burke, J. M., 1998, Structural basis for heterogeneous kinetics: reengineering the hairpin ribozyme, Proc Natl Acad Sci U S A. 95:6091.

    Article  PubMed  CAS  Google Scholar 

  • Frederick, J. M., Krasnoperova, N. V., Hoffmann, K., Church-Kopish, J., Ruther, K., Howes, K., Lem, J., and Baehr, W., 2001, Mutant rhodopsin transgene expression on a null background, Invest Ophthalmolo Vis Sci. 42:826

    CAS  Google Scholar 

  • Fritz, J. J., Gorbatyuk, M., Lewin, A. S., and Hauswirth, W. W., 2004, Design and validation of therapeutic hammerhead ribozymes for autosomal dominant diseases, Methods Mol Biol. 252:221.

    PubMed  CAS  Google Scholar 

  • Gorbatyuk, M., Justilien, V., Liu, J., Hauswirth, W. W., and Lewin, A. S., 2007, Preservation of photoreceptor morphology and function in P23H rats using an allele independent ribozyme, Exp Eye Res. 84:44.

    Article  PubMed  CAS  Google Scholar 

  • Gorbatyuk, M. S., Pang, J. J., Thomas, J., Jr., Hauswirth, W. W., and Lewin, A. S., 2005, Knockdown of wild-type mouse rhodopsin using an AAV vectored ribozyme as part of an RNA replacement approach, Mol Vis. 11:648.

    PubMed  CAS  Google Scholar 

  • Goto, Y., Peachey, N. S., Ziroli, N. E., Seiple, W. H., Gryczan, C., Pepperberg, D. R., and Naash, M. I., 1996, Rod phototransduction in transgenic mice expressing a mutant opsin gene, J Opt Soc Am A Opt Image Sci Vis. 13:577.

    Article  Google Scholar 

  • Grasby, J. A., Mersmann, K., Singh, M., and Gait, M. J., 1995, Purine functional groups in essential residues of the hairpin ribozyme required for catalytic cleavage of RNA, Biochemistry. 34:4068.

    Article  PubMed  CAS  Google Scholar 

  • Hampel, A., Tritz, R., Hicks, M., and Cruz, P., 1990, ’Hairpin’ catalytic RNA model: evidence for helices and sequence requirement for substrate RNA, Nucleic Acids Res. 18:299.

    Article  PubMed  CAS  Google Scholar 

  • Hartong, D. T., Berson, E. L., and Dryja, T. P., 2006, Retinitis pigmentosa, Lancet. 368:1795.

    Article  PubMed  CAS  Google Scholar 

  • Inoue, T., Sullivan, F. X., and Cech, T. R., 1985, Intermolecular exon ligation of the rRNA precursor of Tetrahymena: oligonucleotides can function as 5’ exons, Cell. 43:431

    Article  PubMed  CAS  Google Scholar 

  • Joseph, S., and Burke, J. M., 1993, Optimization of an anti-HIV hairpin ribozyme by in vitro selection, J Biol Chem. 268:24515.

    PubMed  CAS  Google Scholar 

  • LaVail, M. M., Yasumura, D., Matthes, M. T., Drenser, K. A., Flannery, J. G., Lewin, A. S., and Hauswirth, W. W., 2000, Ribozyme rescue of photoreceptor cells in P23H transgenic rats: long-term survival and late-stage therapy, Proc Natl Acad Sci U S A. 97:11488.

    Article  PubMed  CAS  Google Scholar 

  • Lewin, A. S., Drenser, K. A., Hauswirth, W. W., Nishikawa, S., Yasumura, D., Flannery, J. G., and LaVail, M. M., 1998, Ribozyme rescue of photoreceptor cells in a transgenic rat model of autosomal dominant retinitis pigmentosa, Nat Med. 4:967.

    Article  PubMed  CAS  Google Scholar 

  • Liu, J., Timmers, A. M., Lewin, A. S., and Hauswirth, W. W., 2005, Ribozyme knockdown of the gamma-subunit of rod cGMP phosphodiesterase alters the ERG and retinal morphology in wild-type mice, Invest Ophthalmol Vis Sci. 46:3836.

    Article  PubMed  Google Scholar 

  • McGee Sanftner, L. H., Abel, H., Hauswirth, W. W., and Flannery, J. G., 2001, Glial cell line derived neurotrophic factor delays photoreceptor degeneration in a transgenic rat model of retinitis pigmentosa, Mol Ther. 4:622.

    Article  PubMed  CAS  Google Scholar 

  • Naash, M. I., Hollyfield, J. G., al-Ubaidi, M. R., and Baehr, W., 1993, Simulation of human autosomal dominant retinitis pigmentosa in transgenic mice expressing a mutated murine opsin gene, Proc Natl Acad Sci U S A. 90:5499.

    Article  PubMed  CAS  Google Scholar 

  • Naash, M. L., Peachey, N. S., Li, Z. Y., Gryczan, C. C., Goto, Y., Blanks, J., Milam, A. H., and Ripps, H., 1996a, Light-induced acceleration of photoreceptor degeneration in transgenic mice expressing mutant rhodopsin, Invest Ophthalmology Visual Sci. 37:775.

    Google Scholar 

  • Naash, M. I., Ripps, H., Li, S., Goto, Y., and Peachey, N. S., 1996b, Polygenic disease and retinitis pigmentosa: albinism exacerbates photoreceptor degeneration induced by the expression of a mutant opsin in transgenic mice, J Neurosci. 16:7853.

    Google Scholar 

  • Naash, M. I., Wu, T. H., Chakraborty, D., Fliesler, S. J., Ding, X. Q., Nour, M., Peachey, N. S., Lem, J., Qtaishat, N., Al-Ubaidi, M. R., and Ripps, H., 2004, Retinal abnormalities associated with the G90D mutation in opsin, The Journal of comparative neurology.478:149.

    Article  PubMed  CAS  Google Scholar 

  • Noorwez, S. M., Malhotra, R., McDowell, J. H., Smith, K. A., Krebs, M. P., and Kaushal, S., 2004, Retinoids assist the cellular folding of the autosomal dominant retinitis pigmentosa opsin mutant P23H, J Biol Chem. 279:16278.

    Article  PubMed  CAS  Google Scholar 

  • Nour, M., and Naash, M. I., 2003, Mouse models of human retinal disease caused by expression of mutant rhodopsin. A valuable tool for the assessment of novel gene therapies, Adv Exp Med Bio. 533:173.

    CAS  Google Scholar 

  • Penn, J. S., Li, S., and Naash, M. I., 2000, Ambient hypoxia reverses retinal vascular attenuation in a transgenic mouse model of autosomal dominant retinitis pigmentosa, Invest Ophthalmol Vis Sci. 41:4007.

    PubMed  CAS  Google Scholar 

  • Petrin, D., Baker, A., Coupland, S. G., Liston, P., Narang, M., Damji, K., Leonard, B., Chiodo, V. A., Timmers, A., Hauswirth, W., Korneluk, R. G., and Tsilfidis, C., 2003, Structural and functional protection of photoreceptors from MNU-induced retinal degeneration by the X-linked inhibitor of apoptosis, Invest Ophthalmol Vis Sci. 44:2757.

    Article  PubMed  Google Scholar 

  • Qtaishat, N. M., Okajima, T. I., Li, S., Naash, M. I., and Pepperberg, D. R., 1999, Retinoid kinetics in eye tissues of VPP transgenic mice and their normal littermates, Invest Ophthalmol Vis Sci. 40:1040.

    PubMed  CAS  Google Scholar 

  • Shimayama, T., Nishikawa, S., and Taira, K., 1995, Generality of the NUX rule: kinetic analysis of the results of systematic mutations in the trinucleotide at the cleavage site of hammerhead ribozymes, Biochemistry. 34:3649.

    Article  PubMed  CAS  Google Scholar 

  • Sung, C. H., Davenport, C. M., and Nathans, J., 1993, Rhodopsin mutations responsible for autosomal dominant retinitis pigmentosa. Clustering of functional classes along the polypeptide chain, J Biol Chem. 268:26645.

    PubMed  CAS  Google Scholar 

  • Sung, C. H., Schneider, B. G., Agarwal, N., Papermaster, D. S., and Nathans, J., 1991, Functional heterogeneity of mutant rhodopsins responsible for autosomal dominant retinitis pigmentosa, Proc Natl Acad Sci U S A. 88:8840.

    Article  PubMed  CAS  Google Scholar 

  • Tam, B. M., and Moritz, O. L., 2006, Characterization of rhodopsin P23H-induced retinal degeneration in a Xenopus laevis model of retinitis pigmentosa, Invest Ophthalmol Vis Sci. 47:3234.

    Article  PubMed  Google Scholar 

  • Tang, X. B., Hobom, G., and Luo, D., 1994, Ribozyme mediated destruction of influenza A virus in vitro and in vivo, J Med Virol. 42:385.

    Article  PubMed  CAS  Google Scholar 

  • Wang, D. Y., Chan, W. M., Tam, P. O., Baum, L., Lam, D. S., Chong, K. K., Fan, B. J., and Pang, C. P., 2005, Gene mutations in retinitis pigmentosa and their clinical implications, Clin Chim Acta. 351:16.

    Article  CAS  Google Scholar 

  • Wang, M., Lam, T. T., Tso, M. O., and Naash, M. I., 1997, Expression of a mutant opsin gene increases the susceptibility of the retina to light damage, Vis Neurosci. 14:55.

    Article  PubMed  Google Scholar 

  • Werner, M., and Uhlenbeck, O. C., 1995, The effect of base mismatches in the substrate recognition helices of hammerhead ribozymes on binding and catalysis, Nucleic Acids Res. 23:2092.

    Article  PubMed  CAS  Google Scholar 

  • Wu, T. H., Ting, T. D., Okajima, T. I., Pepperberg, D. R., Ho, Y. K., Ripps, H., and Naash, M. I., 1998, Opsin localization and rhodopsin photochemistry in a transgenic mouse model of retinitis pigmentosa, Neuroscience.87:709.

    Article  PubMed  CAS  Google Scholar 

  • Zamecnik, P. C., and Stephenson, M. L., 1978, Inhibition of Rous sarcoma virus replication and cell transformation by a specific oligodeoxynucleotide, Proc Natl Acad Sci U S A. 75:280.

    Article  Google Scholar 

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Correspondence to Dibyendu Chakraborty .

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Chakraborty, D., Whalen, P., Lewin, A.S., Naash, M.I. (2008). In vitro Analysis of Ribozyme-mediated Knockdown of an ADRP Associated Rhodopsin Mutation. In: Anderson, R.E., LaVail, M.M., Hollyfield, J.G. (eds) Recent Advances in Retinal Degeneration. Advances in Experimental Medicine and Biology, vol 613. Springer, New York, NY. https://doi.org/10.1007/978-0-387-74904-4_10

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  • DOI: https://doi.org/10.1007/978-0-387-74904-4_10

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