Abstract
Plants play an important, but often insufficiently recognized. role in human societies, chiefly as providers of food, feed, and fiber, but for other uses as well such as drugs and building materials. In those cases where demand for a particular plant product exceed natural supply, humans initiated cultivation of those plants 10,000 years ago, resulting in the domestication of a limited number of species in several areas of the world, generally located in tropical and subtropical areas. Tropical and subtropical areas consist of several ecozones defined by climate, soil, and vegetation and fauna. One of the major factors distinguishing tropical ecozones is the distribution of rainfall and particularly the length of the dry season, if any. From a biological standpoint, most of biodiversity is concentrated in tropical areas. This may explain in part why the majority of crops discussed in this volume originated in either tropical or subtropical ecozones with summer rains or in the tropical ecozone with year-round rains. The fundamental contribution of genomics to plant breeding is to provide information on the genotypic basis of phenotypic variation. Based on this information, marker-assisted selection systems can be developed that can increase the efficiency at identifying agronomically useful diversity and transferring it into improved cultivars. In turn, marker-assisted selection is expected to increase the efficiency of plant breeding. To achieve this goal, however, genomic resources have to be developed, not only in model species, but especially in target species as illustrated in this volume. Having access to a diverse set of improved crops is a critical element of strategies to alleviate food insecurity and poverty, which affect disproportionately rural populations. Recently, the goal of increasing crop productivity has taken added urgency because of the combined impact of the focus on biofuels and global warming. Genomics is a crucial tool in raising crop productivity for the foreseeable future.
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References
Altschul SF, Gish W (1996) Local alignment statistics. Computer Methods for Macromolecular Sequence Analysis, pp. 460–480
Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796–815
Balick MJ, Cox PA (1996) Plants, people, and culture: the science of ethnobotany. Freeman, New York
Barker G (2006) The agricultural revolution in prehistory. Oxford University Press, Oxford
Bellwood P (2005) First farmers: the origins of agricultural societies. Blackwell, Malden, MA
Brady KU, Kruckeberg AR, Bradshaw HD (2005) Evolutionary ecology of plant adaptation to serpentine soils. Annual Review of Ecology Evolution and Systematics 36:243–266
Bramwell D (2002) How many plant species are there? Plant Talk http://www.plant-talk.org/stories/28bramw.html (Verified June 8, 2007)
Carlborg Ö, Haley CS (2004) Epistasis: too often neglected in complex trait studies? Nature Rev Genetics 5:618–U614
Cassman KG (2007) Climate change, biofuels, and global food security. Environ Res Lett 2:,011002
Clarke A, Gaston KJ (2006) Climate, energy and diversity. Proc Royal Soc B-Biol Sci 273:2257–2266
Collard BCY, Jahufer MZZ, Brouwer JB, Pang ECK (2005) An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts. Euphytica 142:169–196
Crane PR, Lidgard S (1989) Angiosperm diversification and paleolatitudinal gradients in Cretaceous floristic diversity. Science 246:675–678
Currie DJ, Paquin V (1987) Large-scale biogeographical patterns of species richness of trees. Nature 329:326–327
Davies J, Berzonsky WA, Leach GD (2006) A comparison of marker-assisted and phenotypic selection for high grain protein content in spring wheat. Euphytica 152:117–134
Estrada Lugo EIJ (1989) El Códice Florentino: su información etnobotánica. Colegio de Postgraduados, Chapingo, México
Flint-Garcia SA, Thornsberry JM, Buckler IV ES (2003) Structure of linkage disequilibrium in plants. Ann Rev Plant Biol 54:357–374
Francia E, Tacconi G, Crosatti C, Barabaschi D, Bulgarelli D, et al. (2005) Marker assisted selection in crop plants. Plant Cell Tiss Organ Cult 82:317–342
Gepts P (2000) A phylogenetic and genomic analysis of crop germplasm: a necessary condition for its rational conservation and utilization. In: Gustafson J (ed) Proc Stadler Symp. Plenum, New York, pp. 163–181
Gepts P (2004a) Domestication as a long-term selection experiment. Plant Breed Rev 24 (Part 2): 1–44
Gepts P (2004b) Who owns biodiversity and how should the owners be compensated? Plant Physiol 134:1295–1307
Gepts P (2006) Plant genetic resources conservation and utilization: The accomplishments and future of a societal insurance policy. Crop Sci 46:2278–2292
Gepts P, Hancock J (2006) The future of plant breeding Crop Sci 46:1630–1634
Goff SA, Ricke D, Lan T-H, Presting G, Wang R, et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296:92–100
Govaerts R (2003) How many species of seed plants are there? - a response. Taxon 52:583–584
Gur A, Zamir D (2004) Unused natural variation can lift yield barriers in plant breeding. PLoS Biology 2:1610–1615
Hall N (2007) Advanced sequencing technologies and their wider impact in microbiology. J Exp Biol 210:1518–1525
Harlan JR (1971) Agricultural origins: centers and non-centers. Science 174:468–474
Harlan JR (1992) Crops and man, 2nd edn. American Society of Agronomy, Madison, WI
Hawkins BA, Field R, Cornell HV, Currie DJ, Guegan JF, et al. (2003) Energy, water, and broad-scale geographic patterns of species richness. Ecology 84:3105–3117
Hawtin GC (2000) Genetic diversity and food security. UNESCO The Courier http://www.unesco. org/courier/2000_Johnson WC, Gepts P05/uk/doss23.htm (Verified July 13, 2007)
Johnson WC, Gepts P (2002) The role of epistasis in controlling seed yield and other agronomic traits in an Andean x Mesoamerican cross of common bean (Phaseolus vulgaris L.). Euphytica 125:69–79
Kleidon A, Mooney HA (2000) A global distribution of biodiversity inferred from climatic constraints: results from a process-based modelling study. Global Change Biol 6:507–523
Knapp SJ (1998) Marker-assisted selection as a strategy for increasing the probability of selecting superior genotypes. Crop Sci 38:1164–1174
Lam AL, Pazin DE, Sullivan BA (2005) Control of gene expression and assembly of chromosomal subdomains by chromatin regulators with antagonistic functions. Chromosoma (Berlin) 114:242–251
Lewington A (2003) Plants for people. Transworld, London
Lobell DB, Field CB (2007) global scale climate - crop yield relationships and the impacts of recent warming. Environmental Res Lett 2:014002
Mackay I, Powell W (2007) Methods for linkage disequilibrium mapping in crops. Trends Plant Sci 12:57–63
Marinelli J (ed) (2005) Plant. Dorling Kindersley, New York
Mittelbach GG, Steiner CF, Scheiner SM, Gross KL, Reynolds HL, et al. (2001) What is the observed relationship between species richness and productivity? Ecology 82:2381–2396
Mittelbach GG, Schemske DW, Cornell HV, Allen AP, Brown JM, et al. (2007) Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography. Ecol Lett 10:315–331
Morgante M, Salamini F (2003) From plant genomics to breeding practice. Curr Opinion Biotechnol 14:214–219
Myers N (1990) The biodiversity challenge: Expanded hot-spots analysis. The Environmentalist 10:243–256
Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GAB, Kent J (2000) Biodiversity hotspots for conservation priorities. Nature 403:853–858
Nichols WF, Killingbeck KT, August PV (1998) The influence of geomorphological heterogeneity on biodiversity II. A landscape perspective. Conservation Biol 12:371–379
Partel M, Laanisto L, Zobel M (2007) Contrasting plant productivity-diversity relationships across latitude: The role of evolutionary history. Ecology 88:1091–1097
Raunkiaer C (1934) The life forms of plants and statistical plant geography. Oxford University Press, Oxford
Ribaut JM, Ragot M (2007) Marker-assisted selection to improve drought adaptation in maize: the backcross approach, perspectives, limitations, and alternatives. J Exp Bot 58:351–360
Rockström J, Lannerstad M, Falkenmark M (2007) Assessing the water challenge of a new green revolution in developing countries. Proc Natl Acad Sci USA 104:6253–6260
Rosegrant MW, Cline SA (2003) global food security: Challenges and policies. Science 302:1917–1919
Sarr DA, Hibbs DE, Huston MA (2005) A hierarchical perspective of plant diversity. Quart Rev Biol 80:187–212
Schultz J (2005) The ecozones of the world, 2nd edn. Springer, Berlin
Singan V, Colbourne JK (2005) MicrosatDesign is a pipeline for transforming sequencer trace files into DNA markers. CGB Technical Report 2005–01. The Center for Genomics and Bioinformatics, Indiana University, Bloomington http://cgb.indiana.edu/files/articles/CGB-TR-200501.pdf (Verified July 13, 2007)
Smith B (1995) The emergence of agriculture. Scientific American Library, New York
Sreenivasulu N, Sopory S.K, Kishor PBK (2007) Deciphering the regulatory mechanisms of abiotic stress tolerance in plants by genomic approaches. Gene 388:1–13
Tanksley S, McCouch S (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science 277:1063–1066
Toledo A, Burlingame B (2006) Biodiversity and nutrition: A common path toward global food security and sustainable development. J Food Composition Anal 19:477–483
Tuskan GA, DiFazio S, Jansson S, Bohlmann J, Grigoriev I, et al. (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313:1596–1604
Valliyodan B, Nguyen HT (2006) Understanding regulatory networks and engineering for enhanced drought tolerance in plants. Curr Opin Plant Biol 9:189–195
van Driel R, Fransz PF, Verschure PJ (2003) The eukaryotic genome: a system regulated at different hierarchical levels. J Cell Sci 116:4067–4075
Varshney RK, Graner A, Sorrells ME (2005) Genomics-assisted breeding for crop improvement. Trends Plant Sci 10:621–630
von Braun J, Swaminathan MS, Rosegrant MW (2003) 2003–2004 IFPRI annual report essay: Agriculture, food security, nutrition and the Millennium Development Goals. IFPRI http://www.ifpri.org/pubs/books/ar2003/ar2003_essay.htm (Verified July 13, 2007)
Xu YB, McCouch SR, Zhang QF (2005) How can we use genomics to improve cereals with rice as a reference genome? Plant Mol Biol 59:7–26
Yamaguchi K, Mayfield SP (2005) Transcriptional and translational regulation of photosystem II gene expression. Advances in Photosynthesis and Respiration:The light-driven water: Plastoquinone oxireductase, pp. 649–668
Yu J, Hu S, Wang J, Wong GK-S, Li S, et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296:79–92
Zeder MA (2006) Central questions in the domestication of plants and animals. Evolutionary Anthropology 15:105–117
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Gepts, P. (2008). Tropical Environments, Biodiversity, and the Origin of Crops. In: Moore, P.H., Ming, R. (eds) Genomics of Tropical Crop Plants. Plant Genetics and Genomics: Crops and Models, vol 1. Springer, New York, NY. https://doi.org/10.1007/978-0-387-71219-2_1
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