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Genetics and Genomics of Cotton pp 227–254Cite as

Gossypium Bioinformatics Resources

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Part of the book series: Plant Genetics and Genomics: Crops and Models ((PGG,volume 3))

Abstract

The primary goal of this chapter is to provide practical information for utilizing the array of Gossypium bioinformatics resources that are presently available. To establish the setting, the chapter begins with the description of a survey of Gossypium bioinformatics resources that was undertaken by the author in early 2007. Resources are categorized by life science area(s), available data types and available modes of data access. Navigating resources and searching for Gossypium data is then described through a broad collection of search examples that cover data categories ranging from maps, markers and genomic sequence through pedigree, phenotype and agroecology related. Possibilities for automated access to and utilization of resource data through Web services and workflows are described along with examples. Finally, the potential impacts of whole genome sequencing are noted, especially those affecting the range of data types and interface tools offered and the utilization of data exchange standards and ontologies.

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Author information

Authors and Affiliations

  1. Plant Genome Mapping Lab, University of Georgia, Georgia

    Alan R. Gingle

Authors
  1. Alan R. Gingle
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Corresponding author

Correspondence to Alan R. Gingle .

Editor information

Editors and Affiliations

  1. Plant Genome Mapping Laboratory, University of Georgia, 111 Riverbend Road, 30602, Athens, GA, USA

    Andrew H. Paterson

Appendix A

Appendix A

1.1 A.1 Gossypium Web Resource Survey: Table of Resources

This appendix contains tables of Web resources that provide Gossypium data in each of the listed categories. A final table contains other URLs of projects and resources that are discussed in the text. Tables for each data category list resource name or abbreviation and URL. Resources providing multiple categories of data appear in multiple tables.

A.11 Maps, Markers and Genomic Sequence
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A.12 Plant images
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A.13 Crop Science Related
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A.14 Proteome Related
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A.15 Diversity and Evolution
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A.16 General Information
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A.17 Transcriptome Related
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A.18 Biochemical Pathways
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A.20 Project and resource URLs mentioned in the text
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Gingle, A.R. (2009). Gossypium Bioinformatics Resources. In: Paterson, A.H. (eds) Genetics and Genomics of Cotton. Plant Genetics and Genomics: Crops and Models, vol 3. Springer, New York, NY. https://doi.org/10.1007/978-0-387-70810-2_10

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