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11.8 References
Amos, C.I., Page, G., 2001, Cost of linkage versus association methods. In: Rao D.C., Province M.A. (eds) Genetic Dissection of Complex Traits, pp. 213-221. Academic Press, San Diego, CA, USA.
Antonius, K., Ahokas, H., 1996, Flow cytometric determination of polyploidy level in spontaneous clones of strawberries. Hereditas 124: 285.
Ashman, T.L., 1999, Quantitative genetics of floral traits in a gynodioecious wild strawberry Fragaria virginiana: implications for the independent evolution of female and hermaphrodite floral phenotypes. Heredity 83: 733-741.
Ball, R.D., 2005, Experimental designs for reliable detection of linkage disequilibrium in unstructured random population association studies. Genetics 170: 859-875.
Barot, S., Gignoux, J., 2004, How do sessile dioecious species cope with their males? Theoretical Population Biology 66: 163-173.
Bennetzen, J.L., Freeling M., 1993, Grasses as a single genetic system: genome composition, collinearity and compatibility. Trends in Genetics 9: 259-261.
Bus, V., Brooking, L., Davis, L., Norling, C., Ranatunga, C., Gardiner, S., 2001. Accelerated breeding for apple. In: Halligan, L. (ed) The New Zealand Controlled Environment Laboratory (NZCEL) Workshop Proceedings. Use of Controlled Environments in Containment Research, June 2001, pp. 25-27.
Butcher, L.M., Meaburn, E., Knight, J., Sham, P.C., Schalkwyk, L.C., Craig, I.W., Plomin, R., 2005, SNPs, microarrays and pooled DNA: identification of four loci associated with mild mental impairment in a sample of 6000 children. Human Molecular Genetics 14: 1315-1325.
Charlesworth, D., Guttman, D.S., 1999, The evolution of dioecy and plant sex chromosome systems. In: Ainsworth C.C. (ed) Sex Determination in Plants, pp. 25-49. BIOS Scientific Publishers Ltd, Oxford, UK.
Charlesworth, D., Vekemans, X., Castric, V., Glemin, S., 2005, Plant self-incompatibility systems: a molecular evolutionary perspective. New Phytologist 168: 61-69.
Dalbo, M.A., Ye, G.N., Weeden, N.F., Steinkellner, H., Sefc, K.M., Reisch, B.I., 2000, A gene controlling sex in grapevines placed on a molecular marker-based genetic map. Genome 43: 333-340.
De Silva, H.N., Hall, A.J., Rikkerink, E., McNeilage, M.A., Fraser, L., 2005, Estimation of allele frequencies in polyploids under certain patterns of inheritance. Heredity [Epub ahead of print].
Dellaporta, S.L., Calderon-Urrea, A., 1993, Sex determination in flowering plants. Plant Cell 5: 1241-1251.
Dirlewanger, E., Graziano, E., Joobeur, T., Garriga-Caldere, F., Cosson, P., Howad, W., Arus, P., 2004, Comparative mapping and marker-assisted selection in Rosaceae fruit crops. Proceedings of the National Academy of Sciences of the United States of America 101: 9891-9896.
Dobzhanksy, T., 1972, The genetics of the evolutionary process. Columbia University Press, New York, NY, USA.
Gardiner, S.E., Bus, V.G.M., Rusholme, R.L., Chagné, D., Rikkerink, E.H.A., 2005, Apple. In: Kole C (ed) The Genomes: A Series on Genome Mapping, Molecular Breeding & Genomics. Science Publishers, Inc., Enfield, NH, USA, Plymouth, UK.
Guttman, D.S., Charlesworth, D., 1998, An X-linked gene has a degenerate Y-linked homologue in the dioecious plant Silene latifolia. Nature 393: 263-266.
Harvey, C.F., Gill, G.P., Fraser, L.G., McNeilage, M.A. 1997, Sex determination in Actinidia. 1. Sex-linked markers and progeny sex ratio in diploid A. chinensis. Sexual Plant Reproduction 10: 149-154.
Hospital, F., Chevalet, C., Mulsant, P., 1992, Using markers in gene introgression breeding programs. Genetics 132: 1199-1210.
Knapp, S., 2002, Tobacco to tomatoes: a phylogenetic perspective on fruit diversity in the Solanaceae. Journal of Experimental Botany 53: 2001-2022.
Lai, Z., Ma, W., Han, B., Liang, L., Zhang, Y., Hong, G., Xue, Y., 2002, An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum. Plant Molecular Biology 50: 29-42.
Lee, J.M., Sonnhammer, E.L.L., 2003, Genomic gene clustering analysis of pathways in eukaryotes. Genome Research 13: 875-882.
Liu, Z., Moore, P.H., Ma, H., Ackerman, C.M., Ragiba, M., Yu, Q., Pearl, H.M., Kim, M.S., Charlton, J.W., Stiles, J.I., Zee, F.T., Paterson, A.H., Ming, R., 2004, A primitive Y chromosome in papaya marks incipient sex chromosome evolution. Nature 427: 348-352.
Luby, J.J., Shaw, D.V., 2001, Does marker-assisted selection make dollars and sense in a fruit breeding programme? HortScience 36: 872-879.
Luo, Z.W., Zhang, R.M., Kearsey, M.J., 2004, Theoretical basis for genetic linkage analysis in autotetraploid species. Proceedings of the National Academy of Sciences of the United States of America 101: 7040-7045.
Mnejja, M., Arus, P., 2006, Microsatellite transportability across Rosaceae crops. In: 3rd International Rosaceae Genomics conference, p. 57, War Memorial Conference Center, Napier New Zealand, 19-22 March 2006.
Morgan, D.R., Soltis, D.E., Robertson, K.R., 1994, Systematic and Evolutionary implications of rbcL sequence variation in Rosaceae. American Journal of Botany 81: 890-903.
Paal, J., Henselewski, H., Muth, J., Meksem, K., Menendez, C.M., Salamini, F., Ballvora, A., Gebhardt, C., 2004, Molecular cloning of the potato Gro1-4 gene conferring resistance to pathotype Ro1 of the root cyst nematode Globodera rostochiensis, based on a candidate gene approach. Plant Journal 38: 285-297.
Perovic, D., Stein, N., Zhang, H., Drescher, A., Prasad, M., Kota, R., Kopahnke, D., Graner, A., 2004, An integrated approach for comparative mapping in rice and barley with special reference to the Rph16 resistance locus. Functional & Integrative Genomics 4: 74-83.
Sargent, D.J., Davis, T.M., Tobutt, K.R., Wilkinson, M.J., Battey, N.H., Simpson, D.W., 2004, A genetic linkage map of microsatellite, gene-specific and morphological markers in diploid Fragaria. Theoretical and Applied Genetics 109: 1385-1391.
Sham, P., Bader, J.S., Craig, I., O’Donovan, M., Owen, M., 2002, DNA Pooling: a tool for large-scale association studies. Nature Reviews Genetics 3: 862-871.
Sykes, B., 2003, Adam’s Curse - a future without men. Bantam, London.
Tanksley, S.D., Nelson, J.C., 1996, Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from updated germplasm into elite breeding lines. Theoretical and Applied Genetics 92: 191-203.
Thumma, B.R., Nolan, M.F., Evans, R., Moran, G.F., 2005, Polymorphisms in Cinnamoyl CoA Reductase (CCR) are associated with Variation in Microfibril Angle in Eucalyptus spp. Genetics: genetics. 105: 042028.
Ushijima, K., Yamane, H., Watari, A., Kakehi, E., Ikeda, K., Hauck, N.R., Iezzoni, A.F., Tao, R., 2004, The S haplotype-specific F-box protein gene, SFB, is defective in self-compatible haplotypes of Prunus avium and P. mume. Plant Journal 39: 573-586.
Wang, Y., Wang, X., McCubbin, A.G., Kao, T.H., 2003, Genetic mapping and molecular characterization of the self-incompatibility (S) locus in Petunia inflata. Plant Molecular Biology 53: 565-580.
Weiblen, G.D., Yu, D.W., Wes, S.A., 2001, Pollination and parasitism in functionally dioecious figs. Proceedings of Biological Science 22: 651-659.
Wright, S.I., Lauga, B., Charlesworth, D., 2003, Subdivision and haplotype structure in natural populations of Arabidopsis lyrata. Molecular Ecology 12: 1247-1263.
Yamamoto, T., Terakami, S., Nishitani, C., Kimura, T., Sawamura, Y., Hirabashi, T., Hayashi, T., 2006, Genome mapping in pear. In: 3rd International Rosaceae Genomics Conference, p. 55, War Memorial Conference Center, Napier New Zealand, 19-22 March 2006.
Zeng, D., Lin, D.Y., 2005, Estimating haplotype-disease associations with pooled genotype data. Genetic Epidemiology 28: 70-82.
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Rikkerink, E.H.A., Oraguzie, N.C., Gardiner, S.E. (2007). Prospects of Association Mapping in Perennial Horticultural Crops. In: Oraguzie, N.C., Rikkerink, E.H.A., Gardiner, S.E., De Silva, H.N. (eds) Association Mapping in Plants. Springer, New York, NY. https://doi.org/10.1007/978-0-387-36011-9_11
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