Advertisement

NF-κB and Innate Immunity

Chapter
Part of the Current Topics in Microbiology and Immunology book series (CT MICROBIOLOGY, volume 349)

Abstract

Members of the NF-κB transcription factor family play a critical role in the development of innate immunity. Upon recognition of pathogen infections or tissue damage, the NF-κB pathway is strongly activated by cellular pattern recognition receptors, including Toll-like receptors and multiple cytosolic receptors such as RIG-I-like helicases and NOD family proteins. NF-κB is required not only for the expression, but also for subsequent signal transduction of numerous downstream cytokines. NF-κB-responsive genes affect a diverse array of cellular processes including apoptosis and cell survival, and often directly control the course of a pathogen infection. In this review, we will examine signaling pathways leading to NF-κB activation during the innate immune response and mechanisms of pathogen-modulation of these pathways; the specifics of NF-κB-dependent gene programs, and the physiological consequences for the immune system caused by the absence of individual NF-κB subunits.

Keywords

Long Terminal Repeat Newcastle Disease Virus Primary Response Gene Innate Host Defense Secondary Response Gene 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Abbreviations

PRR

Pattern recognition receptor

PAMP

Pathogen associated molecular pattern

TLR

Toll-like receptor

RLR

RIG-I-like receptor

NLR

NOD-like receptor

IFN

Interferon

IFNAR

Interferon α/β receptor

NF-κB

Nuclear factor-kappaB

LPS

Lipopolysaccharide

TIR

Toll/IL-1R

TRIF

TIR domain-containing adaptor gene inducing IFN-β

MyD88

Myeloid differentiation primary response gene 88

MAPK

Mitogen activated protein kinase

TNF

Tumor necrosis factor

TRAF

TNF receptor-associated factor

TIRAP

TIR-domain containing adaptor protein

IRAK

IL-1 receptor associated kinase

TAK1

Transforming growth factor-activated protein kinase 1

IKK

ikappaB kinase

IRF

Interferon regulatory factor

Poly(I:C)

Polyinosinic:polycytidylic acid

RIP

Receptor interacting protein

RHIM

RIP homotypic interaction motif

IL

Interleukin

TANK

TRAF-family member-associated NF-κB activator

TBK1

TANK-binding kinase-1

VSV

Vesicular stomatitis virus

ISRE

Interferon stimulated response element

RIG-I

Retinoic acid inducible gene-I

pDC

Plasmacytoid dendritic cell

NIK

NF-κB inducing kinase

PI-3K

Phosphatidylinositol 3-kinase

NDV

Newcastle disease virus

CARD

Caspase recruitment domain

Mda5

Melanoma differentiation-associated gene 5

FADD

Fas-associated protein with death domain

DAI

DNA-dependent activator of IFN-regulatory factors

ZBP-1

Z-DNA binding protein-1

NOD

Nucleotide-binding oligomerization domain

HIV-1

Human immunodeficiency virus-1

LTR

Long terminal repeat

HSV-1

Herpes simplex virus-1

ASFV

African swine flu virus

Th1

Type I helper T cell

PRD

Positive regulatory domain

References

  1. Abbott DW, Wilkins A, Asara JM, Cantley LC (2004) The Crohn’s disease protein, NOD2, requires RIP2 in order to induce ubiquitinylation of a novel site on NEMO. Curr Biol 14: 2217–2227PubMedGoogle Scholar
  2. Ablasser A, Bauernfeind F, Hartmann G, Latz E, Fitzgerald KA et al (2009) RIG-I-dependent sensing of poly(dA:dT) through the induction of an RNA polymerase III-transcribed RNA intermediate. Nat Immunol 10: 1065–1072PubMedGoogle Scholar
  3. Agarwal S, Rao A (1998) Modulation of chromatin structure regulates cytokine gene expression during T cell differentiation. Immunity 9:765–775PubMedGoogle Scholar
  4. Agalioti T, Lomvardas S, Parekh B, Yie J, Maniatis T et al (2000) Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter. Cell 103:667–678Google Scholar
  5. Amici C, Rossi A, Costanzo A, Ciafrè S, Marinari B et al (2006) Herpes simplex virus disrupts NF-kappaB regulation by blocking its recruitment on the IkappaBalpha promoter and directing the factor on viral genes. J Biol Chem 281:7110–7117PubMedGoogle Scholar
  6. Balachandran S, Thomas E, Barber GN (2004) A FADD-dependent innate immune mechanism in mammalian cells. Nature 432:401–405PubMedGoogle Scholar
  7. Beeson PB (1947) Tolerance to bacterial pyrogens: I. Factors influencing its development. J Exp Med 86:29–38Google Scholar
  8. Bell AC, West AG, Felsenfeld G (2001) Insulators and boundaries: versatile regulatory elements in the eukaryotic genome. Science 291:447–450PubMedGoogle Scholar
  9. Berkowitz B, Huang D, Chen-Park FE, Sigler PB, Ghosh G (2002) The x-ray crystal structure of the NF-kappa B p50.p65 heterodimer bound to the interferon beta-kappa B site. J Biol Chem 277:24694–24700Google Scholar
  10. Bertin J, Nir WJ, Fischer CM, Tayber OV, Errada PR et al (1999) Human CARD4 protein is a novel CED-4/Apaf-1 cell death family member that activates NF-kappaB. J Biol Chem 274:12955–12958PubMedGoogle Scholar
  11. Boone DL, Turer EE, Lee EG, Ahmad R, Wheeler MT et al (2004) The ubiquitin-modifying enzyme A20 is required for termination of Toll-like receptor responses. Nat Immunol 5:1052–1060PubMedGoogle Scholar
  12. Burns K, Clatworthy J, Martin L, Martinon F, Plumpton C et al (2000) Tollip, a new component of the IL-1RI pathway, links IRAK to the IL-1 receptor. Nat Cell Biol 2:346–351PubMedGoogle Scholar
  13. Caamaño J, Alexander J, Craig L, Bravo R, Hunter CA (1999) The NF-kappa B family member RelB is required for innate and adaptive immunity to Toxoplasma gondii. J Immunol 163:4453–4461PubMedGoogle Scholar
  14. Caamaño J, Tato C, Cai G, Villegas EN, Speirs K et al (2000) Identification of a role for NF-kappa B2 in the regulation of apoptosis and in maintenance of T cell-mediated immunity to Toxoplasma gondii. J Immunol 165:5720–5728PubMedGoogle Scholar
  15. Carmody RJ, Chen YH (2007) Nuclear factor-kappaB: activation and regulation during toll-like receptor signaling. Cell Mol Immunol 4:31–41PubMedGoogle Scholar
  16. Chariot A, Leonardi A, Muller J, Bonif M, Brown K et al (2002) Association of the adaptor TANK with the I kappa B kinase (IKK) regulator NEMO connects IKK complexes with IKK epsilon and TBK1 kinases. J Biol Chem 277:37029–37036PubMedGoogle Scholar
  17. Cheong R, Bergmann A, Werner SL, Regal J, Hoffmann A et al (2006) Transient IkappaB kinase activity mediates temporal NF-kappaB dynamics in response to a wide range of tumor necrosis factor-alpha doses. J Biol Chem 281:2945–2950PubMedGoogle Scholar
  18. Chiu Y, Macmillan JB, Chen ZJ (2009) RNA polymerase III detects cytosolic DNA and induces type I interferons through the RIG-I pathway. Cell 138:576–591PubMedGoogle Scholar
  19. Creagh EM, O’Neill LAJ (2006) TLRs, NLRs and RLRs: a trinity of pathogen sensors that co-operate in innate immunity. Trends Immunol 27:352–357PubMedGoogle Scholar
  20. Dennis A, Kudo T, Kruidenier L, Girard F, Crepin VF et al (2008) The p50 subunit of NF-kappaB is critical for in vivo clearance of the noninvasive enteric pathogen Citrobacter rodentium. Infect Immun 76:4978–4988PubMedGoogle Scholar
  21. Dobrovolskaia MA, Vogel SN (2002) Toll receptors, CD14, and macrophage activation and deactivation by LPS. Microbes Infect 4:903–914PubMedGoogle Scholar
  22. Doi TS, Takahashi T, Taguchi O, Azuma T, Obata Y (1997) NF-kappa B RelA-deficient lymphocytes: normal development of T cells and B cells, impaired production of IgA and IgG1 and reduced proliferative responses. J Exp Med 185:953–961PubMedGoogle Scholar
  23. Du Z, Wei L, Murti A, Pfeffer SR, Fan M et al (2007) Non-conventional signal transduction by type 1 interferons: the NF-kappaB pathway. J Cell Biochem 102:1087–1094PubMedGoogle Scholar
  24. El Gazzar M, Yoza BK, Hu JY, Cousart SL, McCall CE (2007) Epigenetic silencing of tumor necrosis factor alpha during endotoxin tolerance. J Biol Chem 282:26857–26864PubMedGoogle Scholar
  25. Ellwood K, Chi T, Huang W, Mitsouras K, Carey M (1998) Cooperative assembly of RNA polymerase II transcription complexes. Cold Spring Harb Symp Quant Biol 63:253–261PubMedGoogle Scholar
  26. Escalante CR, Shen L, Thanos D, Aggarwal AK (2002) Structure of NF-kappaB p50/p65 heterodimer bound to the PRDII DNA element from the interferon-beta promoter. Structure 10:383–391PubMedGoogle Scholar
  27. Fitzgerald KA, Palsson-McDermott EM, Bowie AG, Jefferies CA, Mansell AS et al (2001) Mal (MyD88-adapter-like) is required for Toll-like receptor-4 signal transduction. Nature 413:78–83PubMedGoogle Scholar
  28. Fitzgerald KA, McWhirter SM, Faia KL, Rowe DC, Latz E et al (2003a) IKKepsilon and TBK1 are essential components of the IRF3 signaling pathway. Nat Immunol 4:491–496PubMedGoogle Scholar
  29. Fitzgerald KA, Rowe DC, Barnes BJ, Caffrey DR, Visintin A et al (2003b) LPS-TLR4 signaling to IRF-3/7 and NF-kappaB involves the toll adapters TRAM and TRIF. J Exp Med 198:1043–1055PubMedGoogle Scholar
  30. Franchi L, Warner N, Viani K, Nuñez G (2009) Function of Nod-like receptors in microbial recognition and host defense. Immunol Rev 227:106–128PubMedGoogle Scholar
  31. Franzoso G, Carlson L, Poljak L, Shores EW, Epstein S et al (1998) Mice deficient in nuclear factor (NF)-kappa B/p52 present with defects in humoral responses, germinal center reactions, and splenic microarchitecture. J Exp Med 187:147–159PubMedGoogle Scholar
  32. Ghosh S, Hayden MS (2008) New regulators of NF-kappaB in inflammation. Nat Rev Immunol 8:837–848PubMedGoogle Scholar
  33. Ghosh G, van Duyne G, Ghosh S, Sigler PB (1995) Structure of NF-kappa B p50 homodimer bound to a kappa B site. Nature 373:303–310PubMedGoogle Scholar
  34. Grigoriadis G, Zhan Y, Grumont RJ, Metcalf D, Handman E et al (1996) The Rel subunit of NF-kappaB-like transcription factors is a positive and negative regulator of macrophage gene expression: distinct roles for Rel in different macrophage populations. EMBO J 15:7099–7107PubMedGoogle Scholar
  35. Guo B, Cheng G (2007) Modulation of the interferon antiviral response by the TBK1/IKKi adaptor protein TANK. J Biol Chem 282:11817–11826PubMedGoogle Scholar
  36. Häcker H, Karin M (2006) Regulation and function of IKK and IKK-related kinases. Sci STKE 2006:re13Google Scholar
  37. Häcker H, Redecke V, Blagoev B, Kratchmarova I, Hsu L et al (2006) Specificity in Toll-like receptor signalling through distinct effector functions of TRAF3 and TRAF6. Nature 439:204–207PubMedGoogle Scholar
  38. Harling-McNabb L, Deliyannis G, Jackson DC, Gerondakis S, Grigoriadis G et al (1999) Mice lacking the transcription factor subunit Rel can clear an influenza infection and have functional anti-viral cytotoxic T cells but do not develop an optimal antibody response. Int Immunol 11:1431–1439PubMedGoogle Scholar
  39. Hasegawa M, Fujimoto Y, Lucas PC, Nakano H, Fukase K et al (2008) A critical role of RICK/RIP2 polyubiquitination in Nod-induced NF-kappaB activation. EMBO J 27:373–383PubMedGoogle Scholar
  40. Hayden MS, West AP, Ghosh S (2006) NF-kappaB and the immune response. Oncogene 25:6758–6780PubMedGoogle Scholar
  41. Hebbes TR, Clayton AL, Thorne AW, Crane-Robinson C (1994) Core histone hyperacetylation co-maps with generalized DNase I sensitivity in the chicken beta-globin chromosomal domain. EMBO J 13:1823–1830PubMedGoogle Scholar
  42. Hemmi H, Takeuchi O, Sato S, Yamamoto M, Kaisho T et al (2004) The roles of two IkappaB kinase-related kinases in lipopolysaccharide and double stranded RNA signaling and viral infection. J Exp Med 199:1641–1650PubMedGoogle Scholar
  43. Henricson BE, Neta R, Vogel SN (1991) An interleukin-1 receptor antagonist blocks lipopolysaccharide-induced colony-stimulating factor production and early endotoxin tolerance. Infect Immun 59:1188–1191PubMedGoogle Scholar
  44. Hiscott J, Kwon H, Génin P (2001) Hostile takeovers: viral appropriation of the NF-kappaB pathway. J Clin Invest 107:143–151PubMedGoogle Scholar
  45. Hiscott J, Nguyen TA, Arguello M, Nakhaei P, Paz S (2006) Manipulation of the nuclear factor-kappaB pathway and the innate immune response by viruses. Oncogene 25:6844–6867PubMedGoogle Scholar
  46. Hitotsumatsu O, Ahmad R, Tavares R, Wang M, Philpott D et al (2008) The ubiquitin-editing enzyme A20 restricts nucleotide-binding oligomerization domain containing 2-triggered signals. Immunity 28:381–390PubMedGoogle Scholar
  47. Hoffmann A, Baltimore D (2006) Circuitry of nuclear factor kappaB signaling. Immunol Rev 210:171–186PubMedGoogle Scholar
  48. Hoffmann A, Leung TH, Baltimore D (2003) Genetic analysis of NF-kappaB/Rel transcription factors defines functional specificities. EMBO J 22:5530–5539PubMedGoogle Scholar
  49. Horng T, Barton GM, Flavell RA, Medzhitov R (2002) The adaptor molecule TIRAP provides signalling specificity for Toll-like receptors. Nature 420:329–333PubMedGoogle Scholar
  50. Hornung V, Ellegast J, Kim S, Brzózka K, Jung A et al (2006) 5′-Triphosphate RNA is the ligand for RIG-I. Science 314:994–997PubMedGoogle Scholar
  51. Hoshino K, Sugiyama T, Matsumoto M, Tanaka T, Saito M et al (2006) IkappaB kinase-alpha is critical for interferon-alpha production induced by Toll-like receptors 7 and 9. Nature 440:949–953PubMedGoogle Scholar
  52. Inohara N, Koseki T, Lin J, del Peso L, Lucas PC et al (2000) An induced proximity model for NF-kappa B activation in the Nod1/RICK and RIP signaling pathways. J Biol Chem 275:27823–27831PubMedGoogle Scholar
  53. Ishii KJ, Coban C, Kato H, Takahashi K, Torii Y et al (2006) A Toll-like receptor-independent antiviral response induced by double-stranded B-form DNA. Nat Immunol 7:40–48PubMedGoogle Scholar
  54. Ishii KJ, Kawagoe T, Koyama S, Matsui K, Kumar H et al (2008) TANK-binding kinase-1 delineates innate and adaptive immune responses to DNA vaccines. Nature 451:725–729PubMedGoogle Scholar
  55. Ishikawa H, Claudio E, Dambach D, Raventos-Suarez C, Ryan C et al (1998) chronic inflammation and susceptibility to bacterial infections in mice lacking the polypeptide (p)105 precursor (NF-{kappa}B1) but expressing p50. J Exp Med 187:985–996PubMedGoogle Scholar
  56. Kaiser WJ, Upton JW, Mocarski ES (2008) Receptor-interacting protein homotypic interaction motif-dependent control of NF-kappa B activation via the DNA-dependent activator of IFN regulatory factors. J Immunol 181:6427–6434PubMedGoogle Scholar
  57. Kato H, Sato S, Yoneyama M, Yamamoto M, Uematsu S et al (2005) Cell type-specific involvement of RIG-I in antiviral response. Immunity 23:19–28PubMedGoogle Scholar
  58. Kawai T, Akira S (2007) Signaling to NF-kappaB by Toll-like receptors. Trends Mol Med 13:460–469PubMedGoogle Scholar
  59. Kawai T, Takahashi K, Sato S, Coban C, Kumar H et al (2005) IPS-1, an adaptor triggering RIG-I- and Mda5-mediated type I interferon induction. Nat Immunol 6:981–988PubMedGoogle Scholar
  60. Kelly BL, Locksley RM (2000) Coordinate regulation of the IL-4, IL-13, and IL-5 cytokine cluster in Th2 clones revealed by allelic expression patterns. J Immunol 165:2982–2986PubMedGoogle Scholar
  61. Kim TK, Maniatis T (1997) The mechanism of transcriptional synergy of an in vitro assembled interferon-beta enhanceosome. Mol Cell 1:119–129PubMedGoogle Scholar
  62. Kim JI, Ho IC, Grusby MJ, Glimcher LH (1999) The transcription factor c-Maf controls the production of interleukin-4 but not other Th2 cytokines. Immunity 10:745–751PubMedGoogle Scholar
  63. Kim SG, Kim JS, Kim JM, Chae Jung H, Sung Song I (2005) Inhibition of proinflammatory cytokine expression by NF-kappaB (p65) antisense oligonucleotide in Helicobacter pylori-infected mice. Helicobacter 10:559–566PubMedGoogle Scholar
  64. Kishimoto T (2006) Interleukin-6: discovery of a pleiotropic cytokine. Arthritis Res Ther 8(Suppl 2):S2Google Scholar
  65. Konno H, Yamamoto T, Yamazaki K, Gohda J, Akiyama T et al (2009) TRAF6 establishes innate immune responses by activating NF-kappaB and IRF7 upon sensing cytosolic viral RNA and DNA. PLoS ONE 4:e5674PubMedGoogle Scholar
  66. Kubo M, Ransom J, Webb D, Hashimoto Y, Tada T et al (1997) T-cell subset-specific expression of the IL-4 gene is regulated by a silencer element and STAT6. EMBO J 16:4007–4020PubMedGoogle Scholar
  67. Kwon H, Pelletier N, DeLuca C, Genin P, Cisternas S et al (1998) Inducible expression of IkappaBalpha repressor mutants interferes with NF-kappaB activity and HIV-1 replication in Jurkat T cells. J Biol Chem 273:7431–7440PubMedGoogle Scholar
  68. Lavon I, Goldberg I, Amit S, Landsman L, Jung S et al (2000) High susceptibility to bacterial infection, but no liver dysfunction, in mice compromised for hepatocyte NF-kappaB activation. Nat Med 6:573–577PubMedGoogle Scholar
  69. Lawrence T, Bebien M, Liu GY, Nizet V, Karin M (2005) IKK[alpha] limits macrophage NF-[kappa]B activation and contributes to the resolution of inflammation. Nature 434:1138–1143PubMedGoogle Scholar
  70. Lee EG, Boone DL, Chai S, Libby SL, Chien M et al (2000) Failure to regulate TNF-induced NF-kappaB and cell death responses in A20-deficient mice. Science 289:2350–2354PubMedGoogle Scholar
  71. Lin R, Yang L, Nakhaei P, Sun Q, Sharif-Askari E et al (2006) Negative regulation of the retinoic acid-inducible gene I-induced antiviral state by the ubiquitin-editing protein A20. J Biol Chem 281:2095–2103PubMedGoogle Scholar
  72. Liou HC, Sha WC, Scott ML, Baltimore D (1994) Sequential induction of NF-kappa B/Rel family proteins during B-cell terminal differentiation. Mol Cell Biol 14:5349–5359PubMedGoogle Scholar
  73. Mansell A, Smith R, Doyle SL, Gray P, Fenner JE et al (2006) Suppressor of cytokine signaling 1 negatively regulates Toll-like receptor signaling by mediating Mal degradation. Nat Immunol 7:148–155PubMedGoogle Scholar
  74. Mason N, Aliberti J, Caamano JC, Liou H, Hunter CA (2002) Cutting edge: identification of c-Rel-dependent and -independent pathways of IL-12 production during infectious and inflammatory stimuli. J Immunol 168:2590–2594PubMedGoogle Scholar
  75. McWhirter SM, Fitzgerald KA, Rosains J, Rowe DC, Golenbock DT et al (2004) IFN-regulatory factor 3-dependent gene expression is defective in Tbk1-deficient mouse embryonic fibroblasts. Proc Natl Acad Sci USA 101:233–238PubMedGoogle Scholar
  76. Merika M, Thanos D (2001) Enhanceosomes. Curr Opin Genet Dev 11: 205–208PubMedGoogle Scholar
  77. Meylan E, Burns K, Hofmann K, Blancheteau V, Martinon F et al (2004) RIP1 is an essential mediator of Toll-like receptor 3-induced NF-kappa B activation. Nat Immunol 5:503–507PubMedGoogle Scholar
  78. Meylan E, Curran J, Hofmann K, Moradpour D, Binder M et al (2005) Cardif is an adaptor protein in the RIG-I antiviral pathway and is targeted by hepatitis C virus. Nature 437:1167–1172PubMedGoogle Scholar
  79. Mise-Omata S, Kuroda E, Sugiura T, Yamashita U, Obata Y et al (2009) The NF-kappaB RelA subunit confers resistance to Leishmania major by inducing nitric oxide synthase 2 and Fas expression but not Th1 differentiation. J Immunol 182:4910–4916PubMedGoogle Scholar
  80. Mogensen TH (2009) Pathogen recognition and inflammatory signaling in innate immune defenses. Clin Microbiol Rev 22:240–273 (Table of Contents)Google Scholar
  81. Munshi N, Yie Y, Merika M, Senger K, Lomvardas S et al (1999) The IFN-beta enhancer: a paradigm for understanding activation and repression of inducible gene expression. Cold Spring Harb Symp Quant Biol 64:149–159PubMedGoogle Scholar
  82. Nabel G, Baltimore D (1987) An inducible transcription factor activates expression of human immunodeficiency virus in T cells. Nature 326:711–713PubMedGoogle Scholar
  83. Nenci A, Becker C, Wullaert A, Gareus R, van Loo G et al (2007) Epithelial NEMO links innate immunity to chronic intestinal inflammation. Nature 446:557–561PubMedGoogle Scholar
  84. O’Donnell SM, Hansberger MW, Connolly JL, Chappell JD, Watson MJ et al (2005) Organ-specific roles for transcription factor NF-kappaB in reovirus-induced apoptosis and disease. J Clin Invest 115:2341–2350PubMedGoogle Scholar
  85. Oganesyan G, Saha SK, Guo B, He JQ, Shahangian A et al (2006) Critical role of TRAF3 in the Toll-like receptor-dependent and -independent antiviral response. Nature 439:208–211PubMedGoogle Scholar
  86. Ogura Y, Inohara N, Benito A, Chen FF, Yamaoka S et al (2001) Nod2, a Nod1/Apaf-1 family member that is restricted to monocytes and activates NF-kappaB. J Biol Chem 276:4812–4818PubMedGoogle Scholar
  87. Panne D, Maniatis T, Harrison SC (2004) Crystal structure of ATF-2/c-Jun and IRF-3 bound to the interferon-beta enhancer. EMBO J 23:4384–4393PubMedGoogle Scholar
  88. Panne D, Maniatis T, Harrison SC (2007) An atomic model of the interferon-beta enhanceosome. Cell 129:1111–1123PubMedGoogle Scholar
  89. Patel A, Hanson J, McLean TI, Olgiate J, Hilton M et al (1998) Herpes simplex type 1 induction of persistent NF-kappa B nuclear translocation increases the efficiency of virus replication. Virology 247:212–222PubMedGoogle Scholar
  90. Perry AK, Chow EK, Goodnough JB, Yeh W, Cheng G (2004) Differential requirement for TANK-binding kinase-1 in type I interferon responses to toll-like receptor activation and viral infection. J Exp Med 199:1651–1658PubMedGoogle Scholar
  91. Peters RT, Maniatis T (2001) A new family of IKK-related kinases may function as I kappa B kinase kinases. Biochim Biophys Acta 1471:M57–M62PubMedGoogle Scholar
  92. Ramirez-Carrozzi VR, Nazarian AA, Li CC, Gore SL, Sridharan R et al (2006) Selective and antagonistic functions of SWI/SNF and Mi-2beta nucleosome remodeling complexes during an inflammatory response. Genes Dev 20:282–296Google Scholar
  93. Ramirez-Carrozzi VR, Braas D, Bhatt DM, Cheng CS, Hong C et al (2009) A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling. Cell 138:114–128PubMedGoogle Scholar
  94. Rebsamen M, Heinz LX, Meylan E, Michallet M, Schroder K et al (2009) DAI/ZBP1 recruits RIP1 and RIP3 through RIP homotypic interaction motifs to activate NF-kappaB. EMBO Rep 10:916–922PubMedGoogle Scholar
  95. Riggs AD, Pfeifer GP (1992) X-chromosome inactivation and cell memory. Trends Genet 8:169–174PubMedGoogle Scholar
  96. Rodríguez CI, Nogal ML, Carrascosa AL, Salas ML, Fresno M et al (2002) African swine fever virus IAP-like protein induces the activation of nuclear factor kappa B. J Virol 76:3936–3942PubMedGoogle Scholar
  97. Rong BL, Libermann TA, Kogawa K, Ghosh S, Cao LX et al (1992) HSV-1-inducible proteins bind to NF-kappa B-like sites in the HSV-1 genome. Virology 189:750–756PubMedGoogle Scholar
  98. Roulston A, Marcellus RC, Branton PE (1999) Viruses and apoptosis. Annu Rev Microbiol 53:577–628PubMedGoogle Scholar
  99. Saccani S, Pantano S, Natoli G (2003) Modulation of NF-kappaB activity by exchange of dimers. Mol Cell 11:1563–1574PubMedGoogle Scholar
  100. Sadikot RT, Zeng H, Joo M, Everhart MB, Sherrill TP et al (2006) Targeted immunomodulation of the NF-kappaB pathway in airway epithelium impacts host defense against Pseudomonas aeruginosa. J Immunol 176:4923–4930PubMedGoogle Scholar
  101. Saha SK, Pietras EM, He JQ, Kang JR, Liu S et al (2006) Regulation of antiviral responses by a direct and specific interaction between TRAF3 and Cardif. EMBO J 25:3257–3263PubMedGoogle Scholar
  102. Sanjabi S, Hoffmann A, Liou HC, Baltimore D, Smale ST (2000) Selective requirement for c-Rel during IL-12 P40 gene induction in macrophages. Proc Natl Acad Sci USA 97:12705–12710PubMedGoogle Scholar
  103. Sato S, Sugiyama M, Yamamoto M, Watanabe Y, Kawai T et al (2003) Toll/IL-1 receptor domain-containing adaptor inducing IFN-beta (TRIF) associates with TNF receptor-associated factor 6 and TANK-binding kinase 1, and activates two distinct transcription factors, NF-kappa B and IFN-regulatory factor-3, in the Toll-like receptor signaling. J Immunol 171:4304–4310Google Scholar
  104. Scheidereit C (2006) IkappaB kinase complexes: gateways to NF-kappaB activation and transcription. Oncogene 25:6685–6705PubMedGoogle Scholar
  105. Schübeler D, Francastel C, Cimbora DM, Reik A, Martin DI et al (2000) Nuclear localization and histone acetylation: a pathway for chromatin opening and transcriptional activation of the human beta-globin locus. Genes Dev 14:940–950.PubMedGoogle Scholar
  106. Schwarz EM, Badorff C, Hiura TS, Wessely R, Badorff A et al (1998) NF-kappaB-mediated inhibition of apoptosis is required for encephalomyocarditis virus virulence: a mechanism of resistance in p50 knockout mice. J Virol 72:5654–5660PubMedGoogle Scholar
  107. Seth RB, Sun L, Ea C, Chen ZJ (2005) Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-kappaB and IRF 3. Cell 122:669–682PubMedGoogle Scholar
  108. Sha WC, Liou HC, Tuomanen EI, Baltimore D (1995) Targeted disruption of the p50 subunit of NF-kappa B leads to multifocal defects in immune responses. Cell 80:321–330PubMedGoogle Scholar
  109. Sharma S, TenOever BR, Grandvaux N, Zhou G, Lin R et al (2003) Triggering the interferon antiviral response through an IKK-related pathway. Science 300:1148–1151PubMedGoogle Scholar
  110. Speirs K, Caamano J, Goldschmidt MH, Hunter CA, Scott P (2002) NF-{kappa}B2 is required for optimal CD40-induced IL-12 production but dispensable for Th1 cell differentiation. J Immunol 168:4406–4413PubMedGoogle Scholar
  111. Stetson DB, Medzhitov R (2006) Recognition of cytosolic DNA activates an IRF3-dependent innate immune response. Immunity 24:93–103PubMedGoogle Scholar
  112. Tait SW, Reid EB, Greaves DR, Wileman TE, Powell PP (2000) Mechanism of inactivation of NF-kappa B by a viral homologue of I kappa b alpha. Signal-induced release of I kappa b alpha results in binding of the viral homologue to NF-kappa B. J Biol Chem 275:34656–34664PubMedGoogle Scholar
  113. Takaoka A, Wang Z, Choi MK, Yanai H, Negishi H et al (2007) DAI (DLM-1/ZBP1) is a cytosolic DNA sensor and an activator of innate immune response. Nature 448:501–505PubMedGoogle Scholar
  114. Takemoto N, Koyano-Nakagawa N, Yokota T, Arai N, Miyatake S et al (1998) Th2-specific DNase I-hypersensitive sites in the murine IL-13 and IL-4 intergenic region. Int Immunol 10:1981–1985PubMedGoogle Scholar
  115. Thanos D, Maniatis T (1995) Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome. Cell 83:1091–1100PubMedGoogle Scholar
  116. Verstak B, Nagpal K, Bottomley SP, Golenbock DT, Hertzog PJ et al (2009) MyD88 adapter-like (Mal)/TIRAP interaction with TRAF6 is critical for TLR2- and TLR4-mediated NF-kappaB proinflammatory responses. J Biol Chem 284:24192–24203PubMedGoogle Scholar
  117. Wang Y, Rickman BH, Poutahidis T, Schlieper K, Jackson EA et al (2008) c-Rel is essential for the development of innate and T cell-induced colitis. J Immunol 180:8118–8125PubMedGoogle Scholar
  118. Weih F, Carrasco D, Durham SK, Barton DS, Rizzo CA et al (1995) Multiorgan inflammation and hematopoietic abnormalities in mice with a targeted disruption of RelB, a member of the NF-kappa B/Rel family. Cell 80:331–340PubMedGoogle Scholar
  119. Weih F, Warr G, Yang H, Bravo R (1997) Multifocal defects in immune responses in RelB-deficient mice. J Immunol 158:5211–5218PubMedGoogle Scholar
  120. Weinmann AS, Mitchell DM, Sanjabi S, Bradley MN, Hoffmann A et al (2001) Nucleosome remodeling at the IL-12 p40 promoter is a TLR-dependent, Rel-independent event. Nat Immunol 2:51–57PubMedGoogle Scholar
  121. Weintraub H, Groudine M (1976) Chromosomal subunits in active genes have an altered conformation. Science 193:848–856PubMedGoogle Scholar
  122. Werner SL, Barken D, Hoffmann A (2005) Stimulus specificity of gene expression programs determined by temporal control of IKK activity. Science 309:1857–1861PubMedGoogle Scholar
  123. Wertz IE, O’Rourke KM, Zhou H, Eby M, Aravind L et al (2004) De-ubiquitination and ubiquitin ligase domains of A20 downregulate NF-kappaB signalling. Nature 430:694–699PubMedGoogle Scholar
  124. Wessells J, Baer M, Young HA, Claudio E, Brown K et al (2004) BCL-3 and NF-kappaB p50 attenuate lipopolysaccharide-induced inflammatory responses in macrophages. J Biol Chem 279:49995–50003PubMedGoogle Scholar
  125. Williams SA, Kwon H, Chen L, Greene WC (2007) Sustained induction of NF-kappa B is required for efficient expression of latent human immunodeficiency virus type 1. J Virol 81:6043–6056PubMedGoogle Scholar
  126. Wu C, Wong YC, Elgin SC (1979) The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity. Cell 16:807–814PubMedGoogle Scholar
  127. Xu L, Wang Y, Han K, Li L, Zhai Z et al (2005) VISA is an adapter protein required for virus-triggered IFN-beta signaling. Mol Cell 19:727–740PubMedGoogle Scholar
  128. Yamamoto M, Sato S, Hemmi H, Sanjo H, Uematsu S et al (2002a) Essential role for TIRAP in activation of the signalling cascade shared by TLR2 and TLR4. Nature 420:324–329PubMedGoogle Scholar
  129. Yamamoto M, Sato S, Mori K, Hoshino K, Takeuchi O et al (2002b) Cutting edge: a novel Toll/IL-1 receptor domain-containing adapter that preferentially activates the IFN-beta promoter in the Toll-like receptor signaling. J Immunol 169:6668–6672PubMedGoogle Scholar
  130. Yamamoto M, Sato S, Hemmi H, Hoshino K, Kaisho T et al (2003) Role of adaptor TRIF in the MyD88-independent toll-like receptor signaling pathway. Science 301:640–643PubMedGoogle Scholar
  131. Yamamoto M, Yamazaki S, Uematsu S, Sato S, Hemmi H et al (2004) Regulation of Toll/IL-1-receptor-mediated gene expression by the inducible nuclear protein IkappaBzeta. Nature 430:218–222PubMedGoogle Scholar
  132. Yamaoka S, Courtois G, Bessia C, Whiteside ST, Weil R et al (1998) Complementation cloning of NEMO, a component of the IkappaB kinase complex essential for NF-kappaB activation. Cell 93:1231–1240PubMedGoogle Scholar
  133. Yoneyama M, Kikuchi M, Matsumoto K, Imaizumi T, Miyagishi M et al (2005) Shared and unique functions of the DExD/H-box helicases RIG-I, MDA5, and LGP2 in antiviral innate immunity. J Immunol 175:2851–2858PubMedGoogle Scholar
  134. Zaph C, Troy AE, Taylor BC, Berman-Booty LD, Guild KJ et al (2007) Epithelial-cell-intrinsic IKK-beta expression regulates intestinal immune homeostasis. Nature 446:552–556PubMedGoogle Scholar
  135. Zaragoza C, Saura M, Padalko EY, Lopez-Rivera E, Lizarbe TR et al (2006) Viral protease cleavage of inhibitor of kappaBalpha triggers host cell apoptosis. Proc Natl Acad Sci USA 103:19051–19056PubMedGoogle Scholar
  136. Zhang G, Ghosh S (2002) Negative regulation of toll-like receptor-mediated signaling by Tollip. J Biol Chem 277:7059–7065PubMedGoogle Scholar
  137. Zhao T, Yang L, Sun Q, Arguello M, Ballard DW et al (2007) The NEMO adaptor bridges the nuclear factor-kappaB and interferon regulatory factor signaling pathways. Nat Immunol 8:592–600PubMedGoogle Scholar

Copyright information

© Springer-Verlag Berlin Heidelberg 2010

Authors and Affiliations

  1. 1.Department of Microbiology, Immunology & Molecular GeneticsUniversity of California Los AngelesLos AngelesUSA

Personalised recommendations