Skip to main content

EST and Microarray Analysis of Tobacco BY-2 Cells

  • Chapter
Tobacco BY-2 Cells: From Cellular Dynamics to Omics

Part of the book series: Biotechnology in Agriculture and Forestry ((AGRICULTURE,volume 58))

  • 616 Accesses

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Blokhina O, Virolainen E, Fagerstedt KV (2003) Antioxidants, oxidative damage and oxygen deprivation stress: a review. Ann Bot 91:179–194

    Article  PubMed  CAS  Google Scholar 

  • Creelman RA, Mullet JE (1997) Biosynthesis and action of jasmonates in plants. Annu Rev Plant Physiol Plant Molec Biol 48:355–381

    Article  CAS  Google Scholar 

  • de Bruxelles GL, Roberts MR (2001) Signals regulating multiple responses to wounding and herbivores. Crit Rev Plant Sci 20:487–521

    Article  Google Scholar 

  • Devoto A, Turner JG (2005) Jasmonate-regulated Arabidopsis stress signalling network. Physiol Plant 123:161–172

    Article  CAS  Google Scholar 

  • Endt DV, Kijne JW, Memelink J (2002) Transcription factors controlling plant secondary metabolism: what regulates the regulators? Phytochemistry 61:107–114

    Article  Google Scholar 

  • Galis I, Simek P, Narisawa T, Sasaki M, Horiguchi T, Fukuda H, Matsuoka K (2006) A novel R2R3 MYB transcription factor NtMYBJS1 is a methyl jasmonate-dependent regulator of phenylpropanoid-conjugate biosynthesis in tobacco. Plant J, 46:573–592

    Article  PubMed  CAS  Google Scholar 

  • Goossens A, Hakkinen ST, Laakso I, Seppanen-Laakso T, Biondi S, De Sutter V, Lammertyn F, Nuutila AM, Soderlund H, Zabeau M, Inze D, Oksman-Caldentey KM (2003) A functional genomics approach toward the understanding of secondary metabolism in plant cells. Proc Natl Acad Sci USA 100:8595–8600

    Article  PubMed  CAS  Google Scholar 

  • Hakkinen ST, Oksman-Caldentey KM (2004) Regulation of secondary metabolism in tobacco cell cultures. In: Nagata T, Hasezawa S, Inze D (eds) Tobacco BY-2 cells. Biotechnology in Agriculture and Forestry, vol. 53. Springer, Berlin Heidelberg New York, pp 231–249

    Google Scholar 

  • Hakkinen ST, Rischer H, Laakso I, Maaheimo H, Seppanen-Laakso T, Oksman-Cladentey KM (2004) Anatalline and other methyl jasmonate-inducible nicotine alkaloids from Nicotiana tabacum cv. BY-2 cell cultures. Planta Med 70:936–941

    Article  PubMed  CAS  Google Scholar 

  • Henstrand JM, McCue KF, Brink K, Handa AK, Herrmann KM, Conn EE (1992) Light and fungal elicitor induce 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase messenger-RNA in suspension cultured-cells of parsley (Petroselinum-crispum L). Plant Physiol 98:761–763

    Article  PubMed  CAS  Google Scholar 

  • Hudgins JW, Franceschi VR (2004) Methyl jasmonate-induced ethylene production is responsible for conifer phloemdefense responses and reprogramming of stemcambial zone for traumatic resin duct formation. Plant Physiol 135:2134–2149

    Article  PubMed  CAS  Google Scholar 

  • Jin HL, Martin C (1999) Multifunctionality and diversity within the plant MYB-gene family. Plant Molec Biol 41:577–585

    Article  CAS  Google Scholar 

  • Jones JD, Henstrand JM, Handa AK, Herrmann KM, Weller SC (1995) Impaired wound induction of 3-deoxy-d-arabino-heptulosonate-7-phosphate (DAHP) synthase and altered stem development in transgenic potato plants expressing a DAHP synthase antisense construct. Plant Physiol 108:1413–1421

    PubMed  CAS  Google Scholar 

  • Keinanen M, Oldham NJ, Baldwin IT (2001) Rapid HPLC screening of jasmonate-induced increases in tobacco alkaloids, phenolics, and diterpene glycosides in Nicotiana attenuata. J Agric Food Chem 49:3553–3558

    Article  PubMed  CAS  Google Scholar 

  • Keith B, Dong XN, Ausubel FM, Fink GR (1991) Differential induction of 3-deoxy-d-arabinoheptulosonate 7-phosphate synthase genes in Arabidopsis-thaliana by wounding and pathogenic attack. Proc Natl Acad Sci USA 88:8821–8825

    Article  PubMed  CAS  Google Scholar 

  • Kim YS, Choi D, Lee MM, Lee SH, Kim WT (1998) Biotic and abiotic stress-related expression of 1-aminocyclopropane-1-carboxylate oxidase gene family in Nicotiana glutinosa L. Plant Cell Physiol 39:565–573

    PubMed  CAS  Google Scholar 

  • Kubigsteltig, II, Weiler EW (2003) Arabidopsis mutants affected in the transcriptional control of allene oxide synthase, the enzyme catalyzing the entrance step in octadecanoid biosynthesis. Planta 217:748–757

    Article  PubMed  CAS  Google Scholar 

  • Kunkel BN, Brooks DM (2002) Cross talk between signaling pathways in pathogen defense. Curr Opin Plant Biol 5:325–331

    Article  PubMed  CAS  Google Scholar 

  • Matsuoka K (2004) Protein sorting and protein modification along the secretory pathway in BY-2 cells. In: Nagata T, Hasezawa S, Inze D (eds) Tobacco BY-2 cells. Biotechnology in Agriculture and Forestry, vol. 53. Springer, Berlin Heidelberg New York, pp 283–301

    Google Scholar 

  • Matsuoka K, Demura T, Galis I, Horiguchi T, Sasaki M, Tashiro G, Fukuda H (2004) A comprehensive gene expression analysis toward the understanding of growth and differentiation of tobacco BY-2 cells. Plant Cell Physiol 45:1280–1289

    Article  PubMed  Google Scholar 

  • Nagata T, Hasezawa S, Inze D (eds) (2004) Tobacco BY-2 cells. Biotechnology in Agriculture and Forestry, vol. 53. Springer, Berlin Heidelberg New York

    Google Scholar 

  • Oksman-Caldentey KM, Inze D (2004) Plant cell factories in the post-genomic era: new ways to produce designer secondary metabolites. Trends Plant Sci 9:433–440

    Article  PubMed  CAS  Google Scholar 

  • Oksman-Caldentey KM, Saito K (2005) Integrating genomics and metabolomics for engineering plant metabolic pathways. Curr Opin Biotechnol 16:174–179

    Article  PubMed  CAS  Google Scholar 

  • Ren CM, Pan JW, Peng W, Genschik P, Hobbie L, Hellmann H, Estelle M, Gao B, Peng JR, Sun CQ, Xie DX (2005) Point mutations in Arabidopsis Cullin1 reveal its essential role in jasmonate response. Plant J 42:514–524

    Article  PubMed  CAS  Google Scholar 

  • Rogers Y-H, Venter CJ (2005) Genomics: massively parallel sequencing. Nature 437:326–327

    Article  PubMed  CAS  Google Scholar 

  • Sakai A, Miyazawa Y, Kuroiwa T (2004) Studies on dynamic changes of organelles using tobacco BY-2 as the model plant cell line. In: Nagata T, Hasezawa S, Inze D (eds) Tobacco BY-2 cells. Biotechnology in Agriculture and Forestry, vol. 53. Springer, Berlin Heidelberg New York, pp 192–213

    Google Scholar 

  • Salzman RA, Brady JA, Finlayson SA, Buchanan CD, Summer EJ, Sun F, Klein PE, Klein RR, Pratt LH, Cordonnier-Pratt MM, Mullet JE (2005) Transcriptional profiling of sorghum induced by methyl jasmonate, salicylic acid, and aminocyclopropane carboxylic acid reveals cooperative regulation and novel gene responses. Plant Physiol 138:352–368

    Article  PubMed  CAS  Google Scholar 

  • Strack D (1997) Phenolic metabolism. In: Dey PM, Harborne JB (eds) Plant biochemistry. Academic Press, San Diego, pp 387–416

    Google Scholar 

  • Stracke R, Werber M, Weisshaar B (2001) The R2R3-MYB gene family in Arabidopsis thaliana. Curr Opin Plant Biol 4:447–456

    Article  PubMed  CAS  Google Scholar 

  • Suzuki H, Reddy MSS, Naoumkina M, Aziz N, May GD, Huhman DV, Sumner LW, Blount JW, Mendes P, Dixon RA (2005) Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula. Planta 220:696–707

    Article  PubMed  CAS  Google Scholar 

  • Suzuki K, Fukuda Y, Shinshi H (1995) Studies onelicitor-signal transductionleading todifferential expression of defense genes in cultured tobacco cells. Plant Cell Physiol 36:281–289

    CAS  Google Scholar 

  • Swiatek A, Lenjou M, Van Bockstaele D, Inze D, Van Onckelen H (2002) Differential effect of jasmonic acid and abscisic acid on cell cycle progression in tobacco BY-2 cells. Plant Physiol 128:201–211

    Article  PubMed  CAS  Google Scholar 

  • Swiatek A, Van Dongen W, Esmans EL, Van Onckelen H (2004) Metabolic fate of jasmonates in tobacco bright yellow-2 cells. Plant Physiol 135:161–172

    Article  PubMed  CAS  Google Scholar 

  • Takeda S, Sugimoto K, Otsuki H, Hirochika H (1998) Transcriptional activation of the tobacco retrotransposon Tto1 by wounding and methyl jasmonate. Plant Molec Biol 36:365–376

    Article  CAS  Google Scholar 

  • Takeda S, Sugimoto K, Otsuki H, Hirochika H (1999) A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors. Plant J 18:383–393

    Article  PubMed  CAS  Google Scholar 

  • Xie DX, Feys BF, James S, Nieto-Rostro M, Turner JG (1998) COI1: an Arabidopsis gene required for jasmonate-regulated defense and fertility. Science 280:1091–1094

    Article  PubMed  CAS  Google Scholar 

  • Xu BF, Sheehan MJ, Timko MP (2004) Differential induction of ornithine decarboxylase (ODC) gene family members in transgenic tobacco (Nicotiana tabacum L. cv. Bright Yellow 2) cell suspensions by methyl-jasmonate treatment. Plant Growth Regul 44:101–116

    Article  CAS  Google Scholar 

  • Xu LH, Liu FQ, Lechner E, Genschik P, Crosby WL, Ma H, Peng W, Huang DF, Xie DX (2002) The SCFCOl1 ubiquitin-ligase complexes are required for jasmonate response in Arabidopsis. Plant Cell 14:1919–1935

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2006 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Matsuoka, K., Galis, I. (2006). EST and Microarray Analysis of Tobacco BY-2 Cells. In: Nagata, T., Matsuoka, K., Inzé, D. (eds) Tobacco BY-2 Cells: From Cellular Dynamics to Omics. Biotechnology in Agriculture and Forestry, vol 58. Springer, Berlin, Heidelberg . https://doi.org/10.1007/3-540-32674-X_19

Download citation

Publish with us

Policies and ethics