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Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells

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Bildverarbeitung für die Medizin 2006

Part of the book series: Informatik aktuell ((INFORMAT))

Abstract

High-throughput screens of the gene function provide rapidly increasing amounts of data. In particular, the analysis of image data acquired in genome-wide cell phenotype screens constitutes a substantial bottleneck in the evaluation process and motivates the development of automated image analysis tools for large-scale experiments. Here we introduce a computational scheme to process multi-cell time-lapse images as they are produced in high-throughput screens. We describe an approach to automatically segment and classify cell nuclei into different mitotic phenotypes. This enables automated identification of cell cultures that show an abnormal mitotic behaviour. Our scheme proves a high classification accuracy, suggesting a promising future for automating the evaluation of high-throughput experiments.

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References

  1. Lindblad J, Wählby C, Bengtsson E, Zaltsman A. Image Analysis for Automatic Segmentation of Cytoplasms and Classification of Rac1 Activation. Cytometry Part A 2003;57A:22–33.

    Article  Google Scholar 

  2. Gallardo G, Yang F, Ianzini F, Mackey MA, Sonka M. Mitotic Cell Recognition with Hidden Markov Models. In: RL Galloway Jr, editor. Medical Imaging 2004: Visualization, Image-Guided Procedures, and Display, Proc SPIE. vol. 5367; 2004. p. 661–668.

    Google Scholar 

  3. Boland MV, Murphy RF. A Neural Network Classifier capable of Recognizing the Patterns of all Major Subcellular Structures in Fluorescence Microscope Images of HeLa cells. Bioinformatics 2001;17(12):1213–1223.

    Article  Google Scholar 

  4. Danckaert A, Gonzalez-Couto E, Bollondi L, Thompson N, Hayes B. Automated Recognition of Intracellular Organelles in Confocal Microscope Images. Traffic 2002;3:66–73.

    Article  Google Scholar 

  5. Conrad C, Erfle H, Warnat P, Daigle N, Lörch T, Ellenberg J, et al. Automatic Identification of Subcellular Phenotypes on Human Cell Arrays. Genome Research 2004;14:1130–1136.

    Article  Google Scholar 

  6. Würflinger T, Stockhausen J, Meyer-Ebrecht D, Böcking A. Robust automatic coregistration, segmentation, and classification of cell nuclei in multimodal cytopathological microscopic images. Computerized Medical Imaging and Graphics 2004;28:87–98.

    Article  Google Scholar 

  7. Otsu N. A threshold selection method from grey level histograms. IEEE Transactions on Systems, Man and Cybernetics 1979;9:62–66.

    Article  Google Scholar 

  8. Gonzalez RC, Woods RE. Digital Image Processing. 2nd ed. Prentice Hall; 2002.

    Google Scholar 

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© 2006 Springer-Verlag Berlin Heidelberg

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Harder, N. et al. (2006). Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells. In: Handels, H., Ehrhardt, J., Horsch, A., Meinzer, HP., Tolxdorff, T. (eds) Bildverarbeitung für die Medizin 2006. Informatik aktuell. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-32137-3_76

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