Rhizosphere Microbial Community Dynamics

  • Roopam Kapoor
  • Krishna G. Mukerji
Part of the Soil Biology book series (SOILBIOL, volume 7)

Keywords

Biomass Cellulose Maize Lignin Hydrocarbon 

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References

  1. 1.
    Ahrenholtz I, Harms K, de Vries J, Wackernagel W (2000) Increased killing of Bacillus subtilis on hair roots of transgenic T4-lysozyme-producing potatoes. Appl Environ Microbiol 66:1862–1865 CrossRefPubMedGoogle Scholar
  2. 2.
    Anderson TH, Domsch KH (1993) The metabolic quotient for CO2 (qCO2) as a specific activity parameter to assess the effects of environmental conditions, such as pH, on the microbial biomass of forest soil. Soil Biol Biochem 25:393–395 Google Scholar
  3. 3.
    Atkinson D, Watson CA (2000) The beneficial rhizosphere: a dynamic entity. Appl Soil Ecol 15:99–104 CrossRefGoogle Scholar
  4. 4.
    Bachman G, Kinzel H (1992) Physiological and ecological aspects of the interaction between plant roots and rhizosphere soil. Soil Biol Biochem 24:543–552 Google Scholar
  5. 5.
    Bais HP, Loyola VM, Flores HE, Vivanco JM (2001) Root specific metabolism: the biology and biochemistry of underground organs. In Vitro Cell Dev Biol-Pl 37:730–741 Google Scholar
  6. 6.
    Bais HP, Walker TS, Schweizer HP, Vivanco JM (2002) Root specific elicitation and antimicrobial activity of rosamarinic acid is hairy root cultures of sweet basil (Ocimum basilicum L.). Plant Physiol Biochem 40:983–995 CrossRefGoogle Scholar
  7. 7.
    Bargett RD, Shine A (1999) Linkages between plant litter diversity, soil microbial biomass and ecosystem function in temperate grasslands. Soil Biol Biochem 31:317–321 Google Scholar
  8. 8.
    Becker R, Ulrich A, Hedtke C, Hornermeier B (2001) Einfluss des Anbaus von transgenem herbizidresistentem Raps auf das Agrar-Ökosystem. Bundesgesundheitsbl. Gesundheitsforsch-Gesundheitsschutz 44:159–167 Google Scholar
  9. 9.
    Chaudhury A (1999) Microbial population of wheat rhizosphere as influenced by wheat genotypes. J Interacademia 3:230–231 Google Scholar
  10. 10.
    Chen W, Hoilink HAJ, Schmitthenner AF, Taovinen OH (1988) The role of microbial activity on the suppression of damping-off caused by Pythium ultimum. Phytopathology 78:314–322 Google Scholar
  11. 11.
    Clegg C, Murray P (2002) Soil microbial ecology and plant root interactions. In: Gordon AJ (ed) IGER Innovations No 6, pp 36–39 Google Scholar
  12. 12.
    de Brito-Alvarez MA, Gaugne S, Antoun H (1995) Effect of compost on rhizosphere microflora of the tomato and on the incidence of plant growth-promoting rhizobacteria. Appl Environ Microbiol 61:194–199 Google Scholar
  13. 13.
    Donegan KK, Palm CJ, Fieland VJ, Porteous LA, Ganio LM, Schaller DL, Bucao LQ, Seidler RJ (1995) Changes in levels, species and DNA fingerprints of soil microorganisms associated with cotton expressing the Bacillus thuringiensis var. kurstaki endotoxin. Appl Soil Ecol 2:111–124 CrossRefGoogle Scholar
  14. 14.
    Donegan KK, Schaller DL, Stone JK, Ganio LM, Reed G, Hamm PB, Seidler RJ (1996) Microbial populations, fungal species diversity and plant pathogen levels in field plots of potato plants expressing the Bacillus thuringiensis var. tenebrionis endotoxin. Transgenic Res 5:25–35 CrossRefGoogle Scholar
  15. 15.
    During K, Porsch P, Fladung M, Lorz H (1993) Transgenic plants resistant to the phytopathogenic bacterium Ervinia carotovans. 3:587–598 Google Scholar
  16. 16.
    Estabrook EM, Yoder JI (1998) Plant-plant communications: rhizosphere signating between parasitic angiosperms and their hosts. Plant Physiol 116:1–7 CrossRefGoogle Scholar
  17. 17.
    Flores HE, Vivanco JM, Loyola-Vargas VM (1999) “Radicle” biochemistry: the biology of root-specific metabolism. Trend Plant Sci 4:220–226 Google Scholar
  18. 18.
    Gomes NCM, Heuer H, Schonfeld J, Costa R, Mendonca-Hagler L, Smalla K (2001) Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis. Plant Soil 232:167–180 CrossRefGoogle Scholar
  19. 19.
    Gomez-de-Guinan YG, Nageswara J (1996) Effect of the rhizosphere of peanut (Papilloniaceae) on the fungal flora and the activity of phosphatases. Caribbean J Sci 32:214–220 Google Scholar
  20. 20.
    Grayston SJ, Vaughan D, Jones D (1996) Rhizosphere carbon flow in trees, in comparison with annual plants: the importance of root exudation and its impact on microbial activity and nutrient availability. Appl Soil Ecol 5:29–56 Google Scholar
  21. 21.
    Grayston SJ, Wang SQ, Campbell CD, Edwards AC (1998) Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biol Biochem 30:369–378 CrossRefGoogle Scholar
  22. 22.
    Hack E, Bachmann G, Zechmeister-Boltenstern S (2000) Soil microbial biomass and rhizosphere effects in natural forest stands. Phyton 40:83–90 Google Scholar
  23. 23.
    Hawes MC, Gunawardena U, Mijasaka S, Zhao X (2000) The role of root border cells in plant defense. Trends Plant Sci 5:128–133 CrossRefPubMedGoogle Scholar
  24. 24.
    Heuer H, Kroppenstedt RM, Berg G, Smalla K (2002) Effects of T4 lysozyme release from transgenic potato roots on bacterial rhizophere communities are negligible relative to natural factors. Appl Environ Microbiol 68:1325–1335 CrossRefPubMedGoogle Scholar
  25. 25.
    Hoflich G, Tauchler M, Kuhn G, Rogasik J (2000) Influence of agricultural crops and fertilization on microbial activity and microoorganisms in the rhizosphere. J Agron Crop Sci 184:49–59 CrossRefGoogle Scholar
  26. 26.
    Horst WJ, Kanh M, Jilarin JM, Chude VO (2001) Agronomic measures for increasing availability to crops. Plant Soil 237:211–223 CrossRefGoogle Scholar
  27. 27.
    Jones DC (1999) Amino acid biodegradation and its potential effects on organic nitrogen capture by plants. Soil Biol Biochem 31:613–622 Google Scholar
  28. 28.
    Kennedy AC, Smith KL (1995) Soil microbial diversity and sustainability of agricultural soils. Plant Soil 170:75–86 CrossRefGoogle Scholar
  29. 29.
    Knee EM, Gong FC, Gao M, Teplitski M, Jones AR, Foxworthy A, Mort AJ, Baur WD (2001) Root mucilage from pea and its utilization by rhizosphere bacteria as a sole carbon source. Mol Plant Microbe Interact 14:775–784 PubMedGoogle Scholar
  30. 30.
    Lottmann J, Berg G (2001) Phenotypic and genotypic characterization of antagonistic bacteria associated with roots of transgenic and non-transgenic potato plants. Microbiol Res 156:75–82 CrossRefPubMedGoogle Scholar
  31. 31.
    Lukow T, Dunfield PF, Liesack W (2000) Use of the T-RFLP technique to assess and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants. FEMS Microbiol Ecol 32:241–247 Google Scholar
  32. 32.
    Lussenhop J, Treonis A, Curtes PS, Teeri JA, Vogel CS (1998) Response of soil biota to elevated atmospheric CO2 in poplar model systems. Oecologia 113:247–251 CrossRefGoogle Scholar
  33. 33.
    Lynch JP, Brown J (2001) Topsoil foraging: an architectural adaptations of plant to low phosphorus availability. Plant Soil 37:225–237 Google Scholar
  34. 34.
    Marschner H (1995) Mineral nutrition of higher plants. Academic Press, London Google Scholar
  35. 35.
    Mazzola M (1999) Transformation of soil microbial community structure and Rhizoctonia-suppressive potential in response to apple roots. Phytopathology 89:920–927 Google Scholar
  36. 36.
    Nusslein K, Tiedje JM (1999) Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil. Appl Environ Microbiol 65:3622–3626 PubMedGoogle Scholar
  37. 37.
    Panikov NS (1994) Response of soil microbial community to global warming: simulation of seasonal dynamics and long term succession in typical tundra. Microbiol 63:289–404 Google Scholar
  38. 38.
    Paul EA, Clark FE (1996) Soil microbiology and biochemistry. Academic Press, New York Google Scholar
  39. 39.
    Peters NK, Frost JW, Long SR (1986) A plant flavone, luteolin, induces expression if Rhizobium meliloti nodulation genes. Science 233:977–980 PubMedGoogle Scholar
  40. 40.
    Raaijmakers JM, Weller DM (1998) Natural plant protection by 2,4-diacetyl phloroglucinol-producing Pseudomonas spp. in take-all decline soil. Mol Plant Microbe Interact 11:144–152 Google Scholar
  41. 41.
    Rumberger A, Marschner P (2003) 2 Phenyl ethyl iso thiocyanate concentration and microbial community composition in the rhizosphere of canola. Soil Biol Biochem 35:445–452 CrossRefGoogle Scholar
  42. 42.
    Ryan PR, Delhaize E (2001) Function and mechanism of organic anion exudation from plant roots. Ann Rev Plant Physiol Mol Biol 52:527–560 CrossRefGoogle Scholar
  43. 43.
    Schmalenberger A, Tebbe CC (2002) Bacterial community composition in the rhizosphere of a transgenic, herbicide-resistant maize (Zea mays) and the comparison to its non-transgenic cultivar Bosphore. FEMS Microbiol Ecol 40:29–37 Google Scholar
  44. 44.
    Schonfield J, Gelsomino A, van Overbeek LS, Smalla K, van Elsas JD (2002) Effects of comport addition and simulated solarisation on the fate of Rastonia solanacearum biovar. 2 and indigenous bacteria in soil. FEMS Microbiol Ecol 40:87–105 Google Scholar
  45. 45.
    Scott J, Cooper J (2002) GPI Agricultural Accounts Part II: Resource capacity and use soilqualtiy and productivity. GPI Atlantic, Atlanta, Canada Google Scholar
  46. 46.
    Smalla K, Wieland G, Buchner A, Zock A, Parzy J, Kaiser S, Roskot N, Heure H, Berg G (2001) Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis plant-dependent enrichment and seasonal shifts revealed. Appl Environ Microbiol 67:4742–4751 CrossRefPubMedGoogle Scholar
  47. 47.
    Smith JL, Paul EA (1990) The significance of soil biomass estimates. In: Bollag JM, Stotzky G (eds) Soil biochemistry. Marcel Dekker, New York, pp 357–396 Google Scholar
  48. 48.
    Stephan A, Meyer AH, Schmid B (2000) Plant diversity affects culturable soil bacteria in experimental grassland communities. J Ecol 88:988–999 CrossRefGoogle Scholar
  49. 49.
    Sturz AV, Nowak J (2000) Endophytic communities of rhizobacter and the strategies to create yield enhancing associations with crops. Appl Soil Ecol 15:183–190 CrossRefGoogle Scholar
  50. 50.
    Teplitski M, Robinson JB, Bauer WD (2000). Plants secrete substances that mimic bacterial N-acyl homoserine lactone signal activities and affect population density-dependent behaviours in associated bacteria. Mol Plant Microbe Interact 13:637–648 PubMedGoogle Scholar
  51. 51.
    Tilman D (1982) Resource competition and community structure. Princeton University Press, Princeton, NJ Google Scholar
  52. 52.
    Tilman D (1987) Secondary succession and the pattern of plant dominance along experimental nitrogen gradients. Ecol Monographs 57:189–214 Google Scholar
  53. 53.
    Tsugita A, Inouye M, Terzaghi E, Streinger G (1968) Purification of bacteriophage T4 lysozyme. J Biol Chem 243:391–397 PubMedGoogle Scholar
  54. 54.
    van Bruggen AHC, Semenov AM (2000) In search of biological indicators for soil health and disease suppression. Appl Soil Ecol 15:13–24 Google Scholar
  55. 55.
    van Elsas JD, Garbeva P, Salles J (2002) Effects of agronomical measures on the microbial diversity of soils as related to the suppression of soil-borne plant pathogens. Biodegradation 13:29–40 PubMedGoogle Scholar
  56. 56.
    van Veen JA, Van Overbeck LS, van Elsas JD (1997) Fate and activity of microorganisms following release into soil. Microb Mol Biol Rev 61:121–135 Google Scholar
  57. 57.
    Walker TS, Bais HP, Grotewold E, Vivanco JM (2003) Root exudation and rhizosphere biology. Plant Physiol 132:49–51 CrossRefGoogle Scholar
  58. 58.
    Wallace J (2001) Organic field crop handbook, 2nd edn. Canadian Organic Growers. Mothersill Printing, Canada Google Scholar
  59. 59.
    Wardle DA, Bonner KI, Barker GM, Yeates GW, Nicholson KS, Bardgett RD, Watson KN, Ghani A (1999) Plant removals in perennial grassland: vegetation dynamics, decomposers, soil biodiversity and ecosystem properties. Ecol Monographs 69:535–568 Google Scholar
  60. 60.
    Warenborag FR, Estelrich HD (2000) Towards a better understanding of carbon flow in he rhizosphere: a time dependent approach using C14. Biol Fert Soils 30:528–534 Google Scholar
  61. 61.
    Yang CH, Crowley DE (2000) Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Appl Environ Microbiol 66:345–351 PubMedGoogle Scholar
  62. 62.
    Zak DR, Holmes WE, White DC, Peacock AD, Tilman D (2003) Plant diversity, soil microbial communities and ecosystem function; are there any links? Ecology 84:2042–2050 Google Scholar

Copyright information

© Springer-Verlag 2006

Authors and Affiliations

  • Roopam Kapoor
    • 1
  • Krishna G. Mukerji
    • 1
  1. 1.Department of BotanyUniversity of DelhiDelhiIndia

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