Molecular Markers in Tree Improvement: Characterisation and Use in Eucalyptus

  • M. Shepherd
  • M.E. Jones
Part of the Biotechnology in Agriculture and Forestry book series (AGRICULTURE, volume 55)


Quantitative Trait Locus Seed Orchard Wood Formation Eucalyptus Globulus Putative Quantitative Trait Locus 
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  1. Beavis WD (1998) QTL analysis: power, precision, and accuracy. In: Paterson AH (ed) Molecular dissection of complex traits. CRC Press, Boca Raton, pp 145–162Google Scholar
  2. Bossinger G, Leitch M (2000) Isolation of cambium-specific genes from Eucalyptus globulus Labill. In: Savidge R, Barnett J Napier (eds) Cell and molecular biology of wood formation. BIOS Scientific, Oxford, pp 203–207Google Scholar
  3. Bradshaw HD, Foster GS (1992) Marker aided selection and propagation systems in trees. Advantages of cloning for studying quantitative inheritance. Can J For Res 22:1044–1049Google Scholar
  4. Bradshaw HD, Grattapaglia D (1994) QTL mapping in interspecific hybrids of forest trees. For Genet 1:191–196Google Scholar
  5. Brondani RPV, Brondani C, Tarchini R, Grattapaglia D (1998) Development, characterisation and mapping of microsatellite markers in Eucalyptus grandis and E. urophylla. Theor Appl Genet 97:816–827CrossRefGoogle Scholar
  6. Brondani R, Kirst M, Ribeiro V, Gaiotto F, Marques C, Nichols D, Williams E, Grattapaglia D (2001) Fingerprinting and mapping Eucalyptus with large batteries of microsatellite loci. Paper presented at the plant and animal genome IX conference, 13–17 Jan 2001, San DiegoGoogle Scholar
  7. Brondani RPV, Brondani C, Grattapaglia D (2002) Towards a genus-wide reference linkage map for Eucalyptus based exclusively on highly informative microsatellite markers. Mol Genet Genom 267:338–347CrossRefGoogle Scholar
  8. Brooker MIH, Kleinig DA (1994) Field guide to eucalypts, vol. 3. Northern Australia. Inkata Press, SydneyGoogle Scholar
  9. Brown GR, Gill GP, Sewell MM, Wheeler NC, Megraw RA, Neale DB (2001) Towards association studies in forest trees: wood property QTL verification, candidate genes, and SNPs in Loblolly pine (Pinus taeda L.). Paper presented at the international conference on wood, breeding, biotechnology and industrial expectations, 11–14 June 2001, Bordeaux, FranceGoogle Scholar
  10. Burczyk J, Adam W, Moran G, Griffin A (2002) Complex patterns of mating revealed in a Eucalyptus regnans seed orchard using allozyme markers and the neighbourhood model. Mol Ecol 11:2379–2391CrossRefPubMedGoogle Scholar
  11. Burgess IP,Williams ER, Bell JC, Harwood CE, Owen JV (1996) The effect of outcrossing rate on the growth of selected families of Eucalyptus grandis. Silvae Genet 45(2–3):97–101Google Scholar
  12. Byrne M, Murrell JC, Allen B, Moran G (1995) An integrated genetic linkage map for eucalypts using RFLP, RAPD and isozyme markers. Theor Appl Genet 91:869–875CrossRefGoogle Scholar
  13. Byrne M, Marquez-Garcia MI, Uren T, Smith DS, Moran GF (1996) Conservation and genetic diversity of microsatellite loci in the genus Eucalyptus. Aust J Bot 44:331–341Google Scholar
  14. Campinhos EN, Grattapaglia D, Alfenas AC, Bertolucci FL (1997) Stability of expression of QTL alleles controlling growth across variable genetic backgrounds in Eucalyptus. Paper presented at the proceedings of the IUFRO conference on silviculture and improvement of eucalypts, 24–29 Aug 1997, Salvador, BrazilGoogle Scholar
  15. Chippendale GM (1988) Eucalyptus, Angophora (Myrtaceae). Flora of Australia, vol 19. Australian Govt. Publishing Service, CanberraGoogle Scholar
  16. Dutkowski GW, Potts BM (1999) Geographic patterns of genetic variation in Eucalyptus globulus spp. globulus and a revised racial classification. Aust J Bot 47:237–263Google Scholar
  17. Eldridge K (1970) Breeding system of Eucalyptus regnans. Paper presented at the proceedings of IUFRO section 22 working group on sexual reproduction of forest trees, Varparanta, FinlandGoogle Scholar
  18. Eldridge K, Davidson J, Harwood C, van Wyk G (1994) Eucalypt domestication and breeding, 1st edn. Oxford University Press, OxfordGoogle Scholar
  19. Gion J-M, Rech P, Grima-Pettenati J, Verhaegen D, Plomion C (1999) Mapping candidate genes in Eucalyptus with emphasis on lignification genes. Mol Breed 6:441–449Google Scholar
  20. Glaubitz J, Strk J, Moran G (1999) Genetic impact of different silvicultural practices in native eucalypt forests. Paper presented at the forest genetics and sustainability; Proceeding of IUFRO Conference, Beijing, ChinaGoogle Scholar
  21. Glaubitz J, Emebiri, Moran G (2001) Dinucleotide microsatellites in Eucalyptus sieberi: inheritance, diversity and improved scoring of single base differences. Genome 44:1041–1045CrossRefPubMedGoogle Scholar
  22. Grattapaglia D (2000) In: Jain SM, Minocha SC (Eds.) Molecular biology of wood plants, vol. 1. Kluwer Academic, Dordrecht, pp 451–474Google Scholar
  23. Grattapaglia D (2002) Integrating genomic biotechnologies into genetic improvement of Eucalyptus: the GENOYPTUS project in Brazil. Paper presented at the Simposio Internacional sobre socioeconomia, tecnologia, patologia y sostenibilidad del eucalipto, Pontevedra, Spain, 29–31 May 2002, 16 ppGoogle Scholar
  24. Grattapaglia D, Sederoff R (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 137:1121–1137PubMedGoogle Scholar
  25. Grattapaglia D, Bertolucci FLG, Penchel R, Sederoff R (1996) Genetic mapping of quantitative trait loci controlling growth and wood quality traits in Eucalyptus grandis using a maternal half-sib family and RAPD markers. Genetics 144:1205–1214PubMedGoogle Scholar
  26. Griffin AR, Burgess IP, Wolf L (1988) Patterns of natural and manipulated hybridisation in the genus Eucalyptus L'Herit-a review. Aust J Bot 36:41–66Google Scholar
  27. Griffin A, Harbard J, Centurion C, Santini P (2000) Breeding Eucalyptus grandis × globulus and other inter-specific hybrids with high inviability — problem analysis and experience with Shell forestry projects in Uruguay and Chile. Hybrid Breeding and Genetics Symposium, 9–14 April 2000, Noosa, Queensland, Australia, pp 1–13Google Scholar
  28. Hertzberg M, Aspeborg H, Schrader J, Andersson A, Erlandsson R, Blomqvist K, Bhalerao R, Uhlen M, Teeri TT, Lundeberg J, Sundberg B, Nilsson P, Sandberg G (2001) A transcriptional roadmap to wood formation. Proc Natl Acad Sci USA 98:14732–14737PubMedGoogle Scholar
  29. House SM (1997) Reproductive biology of eucalypts. In: Williams J, Woinarski J (eds) Eucalypt ecology. Cambridge Univ Press, Cambridge, pp 30–55Google Scholar
  30. Jackson HD, Steane DA, Potts BM, Vaillancourt RE (1999) Chloroplast DNA evidence for reticulate evolution in Eucalyptus (Myrtaceae). Mol Ecol 8:739–751CrossRefGoogle Scholar
  31. Jain SM, Minocha SC (2000) Molecular biology of woody plants, vol 1. Kluwer Academic, DordrechtGoogle Scholar
  32. Jones M, Stokoe R, Cross M, Scott L, Maguire T, Shepherd M (2001) Isolation of microsatellite loci from spotted gum (Corymbia variegata), and cross-species amplification in Corymbia and Eucalyptus. Mol Ecol Notes 1:276–278Google Scholar
  33. Law B, Mackowski C, Schoer L, Tweedie T (2000) Flowering phenology of myrtaceous trees and their relation to climatic, environmental and disturbance variables in northern New South Wales. Aust Ecol 25:160–178CrossRefGoogle Scholar
  34. Marques C, Brondani R, Grattapaglia D, Sederoff R (2002) Conservation and synteny of SSR loci and QTLs for vegetative propagation in four Eucalyptus species. Theor Appl Genet 105:474–478PubMedGoogle Scholar
  35. Missiaggia M, Piacezzi A, Grattapaglia D (2002) A major effect QTL for early flowering in Eucalyptus mapped by selective genotyping of microsatellite markers detected in fluorescent multiplexes. Paper presented at the Proceedings of the 48th Brazilian Congress of Genetics, 17–20 Sept 2002, Aguas de LindoirGoogle Scholar
  36. Moran GF, Butcher PA, Glaubitz JC (2000) Application of genetic markers in the domestication, conservation and utilisation of genetic resources of Australasian tree species. Aust J Bot 48:313–320Google Scholar
  37. Myburg AA, Griffin R, Sederoff RR, Whetten R (2000) Genetic analysis of interspecific backcross families of a hybrid of Eucalyptus grandis and Eucalyptus globulus. Paper presented at the Hybrid Breeding and Genetics of Forest Trees Proceedings of QFRI/CRC-SPF Symposium, 9–14 April 2000, Noosa, Queensland, Australia, pp 462–467Google Scholar
  38. Myburg AA, Griffin RA, Sederoff RR, Whetten RW (2003) Comparative genetic linkage maps of Eucalyptus grandis, Eucalyptus globulus and their F-1 hybrid based on a double pseudobackcross mapping approach Theor Appl Genet 107:1028–1042PubMedGoogle Scholar
  39. Myburg AA, Vogl C, Griffin RA, Sederoff RR, Whetten RW (2004) Genetics of postzygotic isolation in Eucalyptus II. Whole-genome analysis of barriers to introgression in a wide interspecific cross of E. grandis and E. globulus. Genetics 166:1405–1418CrossRefPubMedGoogle Scholar
  40. Nesbitt KA, Potts BM, Vaillancourt RE, West AK, Reid JB (1995) Partitioning and distribution of RAPD variation in a forest tree species, Eucalyptus globulus (Myrtaceae). Heredity 74:628–637Google Scholar
  41. Nikles DG, Griffin AR (1992) Breeding hybrids of forest trees: definitions, theory, some practical examples and guidelines on strategy with tropical acacias. ACIAR Proc 37:101–109Google Scholar
  42. O'Malley DM, McKeand SE (1994) Marker-assisted selection for breeding value in forest trees. For Genet 1:207–218Google Scholar
  43. Potts BM, Reid JB (1990) The evolutionary significance of hybridisation in Eucalyptus. Evolution 44:2151–2152Google Scholar
  44. Potts BM, Wiltshire RJE (1997) Eucalypt genetics and genecology. In: Williams J, Woinarski J (eds) Eucalypt ecology: individuals to ecosystems. Cambridge Univ Press, Cambridge, pp 56–91Google Scholar
  45. Potts BM, Dungey HS (2001) Hybridisation of Eucalyptus: key issues for breeders and geneticists. Paper presented at the IUFRO Conference: Developing the eucalypt of the future, Valdivia, Chile.Google Scholar
  46. Potts BM, Barbour RC, Hingston AB (2001) Genetic pollution from farm forestry using eucalypt species and hybrids. A report for RIRDC/L&WA/FWPRDC joint venture agroforestry program, Sept 2001, RIRDC publ no 01/114Google Scholar
  47. Pryor LD (1976) The biology of eucalypts. Arnold, LondonGoogle Scholar
  48. Pryor LD, Johnson LAS (1981) Eucalyptus, the universal Australian. In: Keast A (ed) Ecological biogeography of Australia. Junk, The Hague, pp 499–536Google Scholar
  49. Ritland K (2002) Extensions of models for the estimation of mating systems using n independent loci. Heredity 88:221–228CrossRefPubMedGoogle Scholar
  50. Russell J, Marshall D, Griffin R, Harbard J, Powell W (2001) Gene flow in South American Eucalyptus grandis and Eucalyptus globulus seed orchards. In: Barros S (ed) “Developing the eucalypt of the future.” Proceedings of IUFRO international symposium, Valdivia, ChileGoogle Scholar
  51. Savidge R (2000) Biochemistry of seasonal cambial growth and wood formation — an overview of the challenges. In: Savidge R, Barnett J, Napier R (eds) Cell and molecular biology of wood formation. BIOS Scientific Ltd, Oxford, pp 1–28Google Scholar
  52. Shepherd M, Chaparro JX, Teasdale R (1999) Genetic mapping of monoterpene composition in an interspecific eucalypt hybrid. Theor Appl Genet 99: 1207–1215CrossRefGoogle Scholar
  53. Squilassi M, Grattapaglia D (1998) Mapping QTL using linkage disequilibrium and efficiency of early marker-assisted selection in Eucalyptus. Paper presented at the plant and animal genome VI, Jan 1998, San DiegoGoogle Scholar
  54. Steane DA, Vaillancourt RE, Russell J, Powell W, Marshall D, Potts BM (2001) Development and characterisation of microsatellite loci in Eucalyptus globulus (Myrtaceae). Silvae Genet 50:89–91Google Scholar
  55. Sterky F, Regan S, Karlsson J, Hertzberg M, Rohde A, Holmberg A, Amini B, Bhalerao R, Larsson M, Villarroel R, Vanmontagu M, Sandberg G, Olsson O, Teeri TT, Boerjan W, Gustafsson P, Uhlen M, Sundberg B, Lundeberg J (1998) Gene discovery in the wood-forming tissues of poplar — analysis of 5,692 expressed sequence tags. Proc Natl Acad Sci USA 95:13330–13335CrossRefPubMedGoogle Scholar
  56. Stokoe RL (2002) Pattern of genetic diversity and hybridisation of Eucalyptus cloeziana F. Muell (Myrtaceae), PhD Thesis, Southern Cross University, LismoreGoogle Scholar
  57. Stokoe RL, Shepherd M, Lee D, Nikles DG, Henry RJ (2001) Natural interspecific hybridisation between Eucalyptus acmenoides Schauer and E. cloeziana F. Muell (Myrtaceae). Ann Bot 88:563–570CrossRefGoogle Scholar
  58. Thamarus K, Groom K, Murrell J, Byrne M, Moran G (2002) A genetic linkage map for Eucalyptus globulus with candidate loci for wood, fibre and floral traits. Theor Appl Genet 104:379–387PubMedGoogle Scholar
  59. Turnbull J (1999) Eucalypt plantations. New For 17:37–52Google Scholar
  60. Verhaegen D, Plomion C (1996) Genetic mapping in Eucalyptus urophylla and E. grandis using RAPD markers. Genome 39:1051–1061Google Scholar
  61. Verhaegen D, Plomion C, Gion JM, Poitel M, Costa P, Kremer A (1997) Quantitative trait dissection analysis in Eucalyptus using RAPD markers 1. Detection of QTL in interspecific hybrid progeny, stability of QTL expression across different ages. Theor Appl Genet 95:597–608CrossRefGoogle Scholar
  62. Verhaegen D, Plomion C, Poitel M, Costa P, Kremer A (1998) Quantitative trait dissection analysis in Eucalyptus using RAPD markers 2. Linkage disequilibrium in a factorial design between E. urophylla and E. grandis. For Genet 5:61–69Google Scholar
  63. Whetten R, Sun Y, Zhang Y, Sederoff R (2001) Functional genomics and cell wall biosynthesis in loblolly pine. Plant Mol Bio 47:275–291CrossRefGoogle Scholar
  64. Williams CG, Savolainen O (1996) Inbreeding depression in conifers. For Sci 41:1–20Google Scholar

Copyright information

© Springer-Verlag Berlin Heidelberg 2004

Authors and Affiliations

  • M. Shepherd
  • M.E. Jones
    • 1
  1. 1.Centre for Plant Conservation GeneticsSouthern Cross UniversityLismoreAustralia

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