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EAST: Energy Alignment Search Tool

  • Dariusz Mrozek
  • Bożena Małysiak
  • Stanisław Kozielski
Part of the Lecture Notes in Computer Science book series (LNCS, volume 4223)

Abstract

The inspection of structural changes (in selected proteins’ regions) that take place in particular reactions of signal pathways is very important for their analysis. Conformational modifications as an effect of biochemical reactions or environmental influences cause changes in the conformational energy distributions. Observations of the energy characteristics allow to detect structural changes of selected proteins. In the paper, we present the EAST – method of similarity searching based on energy profiles. This method can be employed to find similar proteins during the analysis of substrates of signal paths’ reactions and to detect regions of protein structure modifications.

Keywords

Protein Data Bank Energy Characteristic Energy Profile Query Protein Optimal Alignment 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2006

Authors and Affiliations

  • Dariusz Mrozek
    • 1
  • Bożena Małysiak
    • 1
  • Stanisław Kozielski
    • 1
  1. 1.Department of Computer ScienceSilesian University of TechnologyGliwicePoland

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