A New Profile Alignment Method for Clustering Gene Expression Data

  • Ataul Bari
  • Luis Rueda
Part of the Lecture Notes in Computer Science book series (LNCS, volume 4013)


We focus on clustering gene expression temporal profiles, and propose a novel, simple algorithm that is powerful enough to find an efficient distribution of genes over clusters. We also introduce a variant of a clustering index that can effectively decide upon the optimal number of clusters for a given dataset. The clustering method is based on a profile-alignment approach, which minimizes the mean-square-error of the first order differentials, to hierarchically cluster microarray time-series data. The effectiveness of our algorithm has been tested on datasets drawn from standard experiments, showing that our approach can effectively cluster the datasets based on profile similarity.


Feature Vector Correlation Method Validity Index Hierarchical Agglomerative Cluster Correlation Distance 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.


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Copyright information

© Springer-Verlag Berlin Heidelberg 2006

Authors and Affiliations

  • Ataul Bari
    • 1
  • Luis Rueda
    • 2
  1. 1.School of Computer ScienceUniversity of WindsorWindsorCanada
  2. 2.Department of Computer ScienceUniversity of ConcepciónConcepciónChile

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