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Fixed-Parameter Tractable Generalizations of Cluster Editing

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Book cover Algorithms and Complexity (CIAC 2006)

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Abstract

In the Cluster Editing problem, a graph has to be changed to a disjoint union of cliques by at most k edge insertions or deletions. Several reasons suggest a generalized problem where the target graph can have some overlapping cliques. We show that the problem remains fixed-parameter tractable (FPT) in the combination of both parameters: k and a second parameter t describing somehow the complexity of overlap structure. For this result we need a structural property of twins in graphs enabling a certain elimination scheme that finally leads to a small enough subgraph we can branch on. We also give a nontrivial algorithm for problem minimizing the number of disjoint clusters, based on a concise enumeration of all solutions to the original Cluster Editing problem. This generic scheme may become interesting also for other multicriteria FPT problems.

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References

  1. Bansal, N., Blum, A., Chawla, S.: Correlation clustering. Machine Learning 56, 89–113 (2004)

    Article  MATH  Google Scholar 

  2. Chen, Z.Z., Jiang, T., Lin, G.: Computing phylogenetic roots with bounded degrees and errors. SIAM J. Comp. 32, 864–879 (2003)

    Article  MATH  MathSciNet  Google Scholar 

  3. Damaschke, P.: Parameterized enumeration, transversals, and imperfect phylogeny reconstruction. Theoretical Computer Science 351, 337–350 (2006); Special issue: 1st International Workshop on Parameterized and Exact Computation IWPEC 2004

    Google Scholar 

  4. Damaschke, P.: On the fixed-parameter enumerability of cluster editing. In: Kratsch, D. (ed.) WG 2005. LNCS, vol. 3787, pp. 283–294. Springer, Heidelberg (2005)

    Chapter  Google Scholar 

  5. Downey, R.G., Fellows, M.R.: Parameterized Complexity. Springer, Heidelberg (1999)

    Google Scholar 

  6. Fernau, H.: A top-down approach to search trees: improved algorithmics for 3-hitting set, ECCC Report 73 (2004)

    Google Scholar 

  7. Frigui, H., Nasraoui, O.: Simultaneous clustering and dynamic keyword weighting for text documents. In: Berry, M. (ed.) Survey of Text Mining, pp. 45–70. Springer, Heidelberg (2004)

    Google Scholar 

  8. Gramm, J., Guo, J., Hüffner, F., Niedermeier, R.: Graph-modeled data clustering: Fixed-parameter algorithms for clique generation. Theory of Computing Systems 38, 373–392 (2005); Preliminary version In: 5th CIAC 2003. LNCS vol. 2653, pp. 108-119. Springer, Heidelberg (2003)

    Google Scholar 

  9. Gramm, J., Guo, J., Hüffner, F., Niedermeier, R.: Automated generation of search tree algorithms for hard graph-modification problems. Algorithmica 39, 321–347 (2004)

    Article  MATH  MathSciNet  Google Scholar 

  10. Guo, J., Hüffner, F., Niedermeier, R.: A structural view on parameterizing problems: Distance from triviality. In: Downey, R.G., Fellows, M.R., Dehne, F. (eds.) IWPEC 2004. LNCS, vol. 3162, pp. 162–173. Springer, Heidelberg (2004)

    Chapter  Google Scholar 

  11. Lin, G.H., Jiang, T., Kearney, P.E.: Phylogenetic k-root and Steiner k-root. In: Lee, D.T., Teng, S.-H. (eds.) ISAAC 2000. LNCS, vol. 1969, pp. 539–551. Springer, Heidelberg (2000)

    Chapter  Google Scholar 

  12. Nishimura, N., Ragde, P., Thilikos, D.M.: Fast fixed-parameter tractable algorithms for nontrivial generalizations of vertex cover. In: Dehne, F., Sack, J.-R., Tamassia, R. (eds.) WADS 2001. LNCS, vol. 2125, pp. 75–86. Springer, Heidelberg (2001); Journal version to appear in Discrete Applied Math.

    Google Scholar 

  13. Shamir, R., Sharan, R., Tsur, D.: Cluster graph modification problems. Discrete Applied Math. 144, 173–182 (2004); Preliminary version In: Kučera, L. (ed.) WG 2002. LNCS, vol. 2573, pp. 379–390. Springer, Heidelberg (2002)

    Google Scholar 

  14. Sharan, R., Maron-Katz, A., Shamir, R.: CLICK and EXPANDER: A system for clustering and visualizing gene expression data. Bioinformatics 19, 1787–1799 (2003)

    Article  Google Scholar 

  15. Sharan, R., Shamir, R.: Algorithmic approaches to clustering gene expression data. In: Current Topics in Computational Molecular Biology, pp. 269–300. MIT Press, Cambridge (2002)

    Google Scholar 

  16. Wu, S., Gu, X.: Gene network: Model, dynamics and simulation. In: Wang, L. (ed.) COCOON 2005. LNCS, vol. 3595, pp. 12–21. Springer, Heidelberg (2005)

    Chapter  Google Scholar 

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Damaschke, P. (2006). Fixed-Parameter Tractable Generalizations of Cluster Editing. In: Calamoneri, T., Finocchi, I., Italiano, G.F. (eds) Algorithms and Complexity. CIAC 2006. Lecture Notes in Computer Science, vol 3998. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11758471_33

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  • DOI: https://doi.org/10.1007/11758471_33

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-34375-2

  • Online ISBN: 978-3-540-34378-3

  • eBook Packages: Computer ScienceComputer Science (R0)

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