Reconstruction of Switching Thresholds in Piecewise-Affine Models of Genetic Regulatory Networks

  • S. Drulhe
  • G. Ferrari-Trecate
  • H. de Jong
  • A. Viari
Part of the Lecture Notes in Computer Science book series (LNCS, volume 3927)


Recent advances of experimental techniques in biology have led to the production of enormous amounts of data on the dynamics of genetic regulatory networks. In this paper, we present an approach for the identification of PieceWise-Affine (PWA) models of genetic regulatory networks from experimental data, focusing on the reconstruction of switching thresholds associated with regulatory interactions. In particular, our method takes into account geometric constraints specific to models of genetic regulatory networks. We show the feasibility of our approach by the reconstruction of switching thresholds in a PWA model of the carbon starvation response in the bacterium Escherichia coli.


Hybrid System Stable RNAs Hybrid Automaton Genetic Regulatory Network Separation Power 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.


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© Springer-Verlag Berlin Heidelberg 2006

Authors and Affiliations

  • S. Drulhe
    • 1
  • G. Ferrari-Trecate
    • 2
    • 3
  • H. de Jong
    • 1
  • A. Viari
    • 1
  1. 1.INRIA Rhône-AlpesMontbonnot, Saint IsmierFrance
  2. 2.INRIARocquencourt, Le ChesnayFrance
  3. 3.Dipartimento di Informatica e SistemisticaUniversità degli Studi di PaviaPaviaItaly

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