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A New Coarse-to-Fine Framework for 3D Brain MR Image Registration

  • Conference paper
Book cover Computer Vision for Biomedical Image Applications (CVBIA 2005)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 3765))

Abstract

Registration, that is, the alignment of multiple images, has been one of the most challenging problems in the field of computer vision. It also serves as an important role in biomedical image analysis and its applications. Although various methods have been proposed for solving different kinds of registration problems in computer vision, the results are still far from ideal when it comes to real world biomedical image applications. For instance, in order to register 3D brain MR images, current state of the art registration methods use a multi-resolution coarse-to-fine algorithm, which typically involves starting with low resolution images and working progressively through to higher resolutions, with the aim to avoid the local maximum "traps". However, these methods do not always successfully avoid the local maximum. Consequently, various rather sophisticated optimization methods are developed to attack this problem. In this paper, we propose a novel viewpoint on the coarse-to-fine registration, in which coarse and fine images are distinguished by different scales of the objects instead of different resolutions of the images. Based on this new perspective, we develop a new image registration framework by combining the multi-resolution method with novel multi-scale algorithm, which could achieve higher accuracy and robustness on 3D brain MR images. We believe this work has great contribution to biomedical image analysis and related applications.

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References

  1. Alizadeh, F., Goldfarb, D.: Second-order cone programming. Mathematical Programming 95(1), 3–51 (2003)

    Article  MATH  MathSciNet  Google Scholar 

  2. Alliney, S.: Digital filters as absolute norm regularizers. IEEE Trans. on Signal Processing 40, 1548–1562 (1992)

    Article  MATH  Google Scholar 

  3. Chan, T.F., Esedoglu, S.: Aspects of Total Variation Regularized L1 Function Approximation. UCLA CAM Report 04-07 (Feburary 2004)

    Google Scholar 

  4. Chen, T., Yin, W., Zhou, X.S., Comaniciu, D., Huang, T.S.: Illumination Normalization for Face Recognition and Uneven Background Correction Using Total Variation Based Image Models. In: CVPR (2005)

    Google Scholar 

  5. Goldfarb, D., Yin, W.: Second-order cone programming methods for total variation-based image restoration. Columbia CORC TR-2004-05 (May 2004)

    Google Scholar 

  6. Jenkinson, M., Bannister, P., Brady, J.M., Smith, S.M.: Improved Optimisation for the Robust and Accurate Linear Registration and Motion Correction of Brain Images. NeuroImage 17(2), 825–841 (2002)

    Article  Google Scholar 

  7. Jenkinson, M., Bannister, P., Brady, J.M., Smith, S.M.: Improved Optimisation for the Robust and Accurate Linear Registration and Motion Correction of Brain Images. NeuroImage 17(2), 825–841 (2002)

    Article  Google Scholar 

  8. Kwan, R.K.-S., Evans, A.C., Pike, G.B.: MRI simulationbased evaluation of image-processing and classification methods. IEEE Trans. Med. Img. 18(11), 1085–1097 (1999)

    Article  Google Scholar 

  9. Maintz, J.B.A., Viergever, M.A.: A survey of Medical Image Registration. Medical Image Analysis 2(1), 1–36 (1998)

    Article  Google Scholar 

  10. Meyer, Y.: Oscillating patterns in image processing, AMS. Univ. Lecture Series, vol. 22 (2000)

    Google Scholar 

  11. Nikolova, M.: Minimizers of cost-functions involving nonsmooth data-fidelity terms. SIAM Journal on Numerical Analysis 40(3), 965–994 (2002)

    Article  MATH  MathSciNet  Google Scholar 

  12. Oenev, P., Atick, J.: Local feature analysis: A general statistical theory for object reperesentation. Network: Computation in Neural System 7, 477–500 (1996)

    Article  Google Scholar 

  13. Osher, S., Scherzer, O.: G-norm properties of bounded variation regularization. UCLA CAM Report 04-35 (2004)

    Google Scholar 

  14. Pluim, J.P.W., Maintz, J.B.A., Viergever, M.A.: Mutual information based registration of medical images: a survey. IEEE Med. Img. 22, 986–1004 (2003)

    Article  Google Scholar 

  15. Press, W., Teukolsky, S., Vetterling, W., Flannery, B.: Numerical Recipies in C, 2nd edn. Cambridge University Press, Cambridge (1995)

    Google Scholar 

  16. Roche, A., Malandain, G., Pennec, X., Ayache, N.: The corrlation ratio as a new similarity measure for multi-modal image registration. In: Wells, W.M., Colchester, A.C.F., Delp, S.L. (eds.) MICCAI 1998. LNCS, vol. 1496, p. 1115. Springer, Heidelberg (1998)

    Google Scholar 

  17. Rudin, L., Osher, S., Fatemi, E.: Nonlinear total variation based noise removal algorithms. Physica D 60, 259–268 (1992)

    Article  MATH  Google Scholar 

  18. Strong, D., Chan, T.: Edge-preserving and scaledependent properties of total variation regularization. Inverse problems 19, S165-S187 (2003)

    Google Scholar 

  19. Viola, P., Wells, W.: Alignment by maximization of mutual information. In: ICCV 1995 (1995)

    Google Scholar 

  20. Woods, R., Mazziotta, J., Cherry, S.: MRI-PET registration with automated algorithm. Journal of Computer Assisted Tomography 17(4), 536–546 (1993)

    Article  Google Scholar 

  21. Yin, W., Chen, T., Zhou, X.-S., Chakraborty, A.: Background correction for cDNA microarray images using the TV+L1 model. Bioinformatics 21(10), 2410–2416 (2005)

    Article  Google Scholar 

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Chen, T., Huang, T.S., Yin, W., Zhou, X.S. (2005). A New Coarse-to-Fine Framework for 3D Brain MR Image Registration. In: Liu, Y., Jiang, T., Zhang, C. (eds) Computer Vision for Biomedical Image Applications. CVBIA 2005. Lecture Notes in Computer Science, vol 3765. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11569541_13

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  • DOI: https://doi.org/10.1007/11569541_13

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-29411-5

  • Online ISBN: 978-3-540-32125-5

  • eBook Packages: Computer ScienceComputer Science (R0)

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