Skip to main content

A Novel Approach to Retrosynthetic Analysis Utilizing Knowledge Bases Derived from Reaction Databases

  • Conference paper
Knowledge-Based Intelligent Information and Engineering Systems (KES 2005)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 3681))

Abstract

Novel approach to empirical retrosynthetic analysis of computer-assisted synthesis design is proposed using the KOSP (Knowledge base-Oriented system for Synthesis Planning) system. KOSP has four functions: (1) strategic site pattern perception, (2) precursor skeleton generation, (3) retrosynthetic scheme evaluation, and (4) retrosynthetic analysis termination. This system is based on knowledge bases in which reactions are abstracted by structural and/or stereo characteristics of reaction sites and their environments. This paper describes the framework of KOSP and results of its execution.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Satoh, H., Funatsu, K.: SOPHIA, a Knowledge Base-Guided Reaction Prediction System. Utilization of a Knowledge Base Derived from a Reaction Database. J. Chem. Inf. Comput. Sci. 35, 34–44 (1995)

    Google Scholar 

  2. Satoh, H., Funatsu, K.: Further Development of a Reaction Generator in the SOPHIA system for Organic Reaction Prediction. Knowledge-Guided Addition of Suitable Atoms and/or Atomic Groups to Product Skeleton. J. Chem. Inf. Comput. Sci. 36, 173–184 (1996)

    Google Scholar 

  3. Funatsu, K., Sasaki, S.: Computer-Assisted Synthesis Design and Reaction Prediction System AIPHOS. Tetrahedron Comput. Method. 1, 27–38 (1988)

    Article  Google Scholar 

  4. Satoh, K., Azuma, S., Satoh, H., Funatsu, K.: Development of the Program for Construction of a Starting Material Library for AIPHOS. J. Chem. Software 4, 101–112 (1997)

    Google Scholar 

  5. Wipke, W.T., Dyott, T.M.: Use of Ring Assemblies in a Ring Perception Algorithm. J. Chem. Inf. Comput. Sci. 15, 140–147 (1975)

    Google Scholar 

  6. Schmidt, B., Felischauser, J.: Fortran IV Program for Finding the Smallest Set of Smallest Rings of a Graph. J. Chem. Inf. Comput. Sci. 18, 204–206 (1978)

    Google Scholar 

  7. ACD: Available Chemicals Directory. MDL Information Systems, Inc., San Leandro

    Google Scholar 

  8. Susseguth, E.H.: Graph-Theoretic Algorithm for Matching Chemical Structures. J. Chem. Doc. 5, 36–43 (1965)

    Article  Google Scholar 

  9. Funatsu, K., Miyabayashi, N., Sasaki, S.: Further Development of Structure Generation in the Automated Structure Elucidation System. J. Chem. Inf. Comput. Sci. 28, 18–28 (1988)

    Google Scholar 

  10. Kimura, Y., Atarashi, S., Kawakami, K., Sato, K., Hayakawa, I.: Fluoro-cyclopropyl. quinolones. 2. Synthesis and Stereochemical Structure-Activity Relationships of Chiral 7-7-Amino-5-azaspiro[2.4]heptane-5-yl.-1-2-fluorocyclo-propyl.quinolone Antibacterial Agents. J. Med. Chem. 37, 3344–3352 (1994)

    Article  Google Scholar 

  11. Satoh, K., Imura, A., Kanai, K., Miyadera, A., Yukimoto, Y.: An Efficient Synthesis of a Key Intermediate of DU-6859a via Asymmetric Microbial Reduction. Chem. Pharm. Bull. 46, 587–591 (1998)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2005 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Funatsu, K. (2005). A Novel Approach to Retrosynthetic Analysis Utilizing Knowledge Bases Derived from Reaction Databases. In: Khosla, R., Howlett, R.J., Jain, L.C. (eds) Knowledge-Based Intelligent Information and Engineering Systems. KES 2005. Lecture Notes in Computer Science(), vol 3681. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11552413_25

Download citation

  • DOI: https://doi.org/10.1007/11552413_25

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-28894-7

  • Online ISBN: 978-3-540-31983-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics