Skip to main content

Oncology Ontology in the NCI Thesaurus

  • Conference paper
Artificial Intelligence in Medicine (AIME 2005)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 3581))

Included in the following conference series:

Abstract

The National Cancer Institute’s Thesaurus (NCIT) has been created with the goal of providing a controlled vocabulary which can be used by specialists in the various sub-domains of oncology. It is intended to be used for purposes of annotation in ways designed to ensure the integration of data and information deriving from these various sub-domains, and thus to support more powerful cross-domain inferences. In order to evaluate its suitability for this purpose, we examined the NCIT’s treatment of the kinds of entities which are fundamental to an ontology of colon carcinoma. We here describe the problems we uncovered concerning classification, synonymy, relations and definitions, and we draw conclusions for the work needed to establish the NCIT as a reference ontology for the cancer domain in the future.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Ceusters, W., Smith, B., Goldberg, L.: A terminological and ontological analysis of the NCI Thesaurus. Methods of Information in Medicine (2005) (in press)

    Google Scholar 

  2. Ceusters, W., Smith, B., Kumar, A., Dhaen, C.: Ontology-Based Error Detection in SNOMED-CT® Medinfo. 2004, pp. 482–486 (2004)

    Google Scholar 

  3. Devita, V.T., Hellman, S., Rosenberg, S.A.: Principles and Practices of Oncology. Cancers of the Gastrointestinal Tract. 33.7 Cancer of the Colon, 6th edn., ch. 33 (CD)

    Google Scholar 

  4. Kumar, A., Yip, L., Smith, B., Grenon, P.: Bridging the Gap between Medical and Bioinformatics Using Formal Ontological Principles. Computers in Biology and Medicine (2005) (in press)

    Google Scholar 

  5. Kumar, A., Smith, B.: On Controlled Vocabularies in Bioinformatics: A Case Study in Gene Ontology. Drug Discovery Today: BIOSILICO 2, 246–252 (2004) (2004a)

    Google Scholar 

  6. Kumar, A., Smith, B.: Towards a Proteomics Metaclassification. In: IEEE Fourth Symposium on Bioinformatics and Bioengineering, Taichung, Taiwan, pp. 419–427. IEEE Press, Los Alamitos (2004) (2004b)

    Google Scholar 

  7. Kumar, A., Smith, B., Borgelt, C.: Dependence Relationships between Gene Ontology Terms based on TIGR Gene Product Annotations. CompuTerm. In: 3rd International Workshop on Computational Terminology, August 29, 2004, pp. 31–38 (2004)

    Google Scholar 

  8. Kumar, A., Smith, B.: The Universal Medical Language System and the Gene Ontology: Some Critical Reflections. In: Günter, A., Kruse, R., Neumann, B. (eds.) KI 2003. LNCS (LNAI), vol. 2821, pp. 135–148. Springer, Heidelberg (2003)

    Chapter  Google Scholar 

  9. Smith, B., Ceusters, W., Koehler, J., Klagges, B., Kumar, A., Lomax, J., Mungall, C., Neuhaus, F., Rector, A., Rosse, C.: Relations in Biomedical Ontologies Genome Biology (2005); 6:R46 (2005a)

    Google Scholar 

  10. Smith, B., Ceusters, W., Temmerman, R.: Wuesteria. MIE 2005 (2005) (2005b) (in press)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2005 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Kumar, A., Smith, B. (2005). Oncology Ontology in the NCI Thesaurus. In: Miksch, S., Hunter, J., Keravnou, E.T. (eds) Artificial Intelligence in Medicine. AIME 2005. Lecture Notes in Computer Science(), vol 3581. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11527770_30

Download citation

  • DOI: https://doi.org/10.1007/11527770_30

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-27831-3

  • Online ISBN: 978-3-540-31884-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics