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Identification of salt-responsive genes in monocotyledonous plants: from transcriptome to functional

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References

  1. Ishitani, M., Nakamura, T., Han, S.Y. and Takabe, T. (1995) Expression of the betaine aldehyde dehydrogenase gene in barley in response to osmotic stress and abscisic acid. Plant Mol. Biol. 27, 307-315.

    Article  CAS  PubMed  Google Scholar 

  2. Yoshiba, Y., Kiyosue, T., Katagiri, T., Ueda, H., Mizoguchi, T., Yamaguchi-Shinozaki, K., Wada, K., Harada, Y. and Shinozaki, K. (1995) Correlation between the induction of a gene for delta 1-pyrroline-5-carboxylate synthetase and the accumulation of proline in Arabidopsis thaliana under osmotic stress. Plant J. 7, 751-760.

    Article  CAS  PubMed  Google Scholar 

  3. Ueda, A., Shi, W.M., Sanmiya, K., Shono, M. and Takabe, T. (2001) Functional analysis of salt-inducible proline transporter of barley roots. Plant Cell Physiol. 42, 1282-1289.

    Article  CAS  PubMed  Google Scholar 

  4. Urao, T., Yakubov, B., Satoh, R., Yamaguchi-Shinozaki, K., Seki, M., Hirayama, T. and Shinozaki, K. (1999) A transmembrane hybrid-type histidine kinase in Arabidopsis functions as an osmosensor. Plant Cell 11, 1743-1754.

    Article  CAS  PubMed  Google Scholar 

  5. Kasuga, M., Liu, Q., Miura, S., Yamaguchi-Shinozaki, K. and Shinozaki, K. (1999) Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nat. Biotech. 17, 287-291.

    Article  CAS  Google Scholar 

  6. Riechmann, J.L., Heard, J., Martin, G., Reuber, L., Jiang, C., Keddie, J., Adam, L., Pineda, O., Ratcliffe, O.J., Samaha, R.R., Creelman, R., Pilgrim, M., Broun, P., Zhang, J.Z., Ghandehari, D., Sherman, B.K. and Yu, G. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290, 2105-2110.

    Article  CAS  PubMed  Google Scholar 

  7. Riechmann, J.L. and Ratcliffe, O.J. (2000) A genomic perspective on plant transcription factors. Curr. Opin. Plant Biol. 3, 423-434.

    Article  CAS  PubMed  Google Scholar 

  8. Liang, P. and Pardee, A.B. (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257,. 967-971.

    Article  CAS  PubMed  Google Scholar 

  9. Shi, W.M., Ueda, A., Ozaki, K., Inada, M., Takamatsu, A. and Takabe, T. (2002) Analysis of heat stress responsive genes in Aneurolepidium chinense leaves by differential display. Plant Prod. Sci. 5, 229-235.

    Article  CAS  Google Scholar 

  10. Ueda, A., Shi, W., Nakamura, T. and Takabe, T. (2002) Analysis of salt-inducible genes in barley roots by differential display. J. Plant Res. 115, 119-130.

    Article  CAS  PubMed  Google Scholar 

  11. Schena, M., Shalon, D., Davis, R.W. and Brown, P.O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470.

    Article  CAS  PubMed  Google Scholar 

  12. Velculescu, V.E., Zhang, L., Vogelstein, B. and Kinzler, K.W. (1995) Serial analysis of gene expression. Science 270, 484-487.

    Article  CAS  PubMed  Google Scholar 

  13. Tarczynski, M.C., Jensen, R.G. and Bohnert, H.J. (1993) Stress protection in transgenic tobacco producing a putative osmoprotectant, mannitol. Science 259, 508-510.

    Article  CAS  PubMed  Google Scholar 

  14. Kishor, P., Hong, Z., Miao, G.H., Hu, C. and Verma, D. (1995) Overexpression of [delta]-pyrroline-5-carboxylate synthetase increases proline production and confers osmotolerance in transgenic plants. Plant Physiol. 108, 1387-1394.

    CAS  PubMed  Google Scholar 

  15. Takabe, T., Nakamura, T., Nomura, M., Hayashi, Y., Ishitani, M., Muramoto, Y., Tanaka, A. and Takabe, T. (1998) Glycinebetaine and the genetic engineering of salinity tolerance in plants. In Stress Responses of Photosynthesis Organisms (Satoh, K. and Murata, N.eds). Amsterdam: Elsevier Science, pp. 115-131.

    Google Scholar 

  16. Apse, M.P., Aharon, G.S., Snedden, W.A. and Blumwald, E. (1999) Salt tolerance conferred by overexpression of a vacuolar Na+/H+ antiport in Arabidopsis. Science 285, 1256-1258.

    Article  CAS  PubMed  Google Scholar 

  17. Shi, H., Lee, B.H., Wu, S.J. and Zhu, J.K. (2003) Overexpression of a plasma membrane Na+/H+ antiporter gene improves salt tolerance in Arabidopsis thaliana. Nat. Biotechnol. 21, 81-85.

    Article  CAS  PubMed  Google Scholar 

  18. Yoshida, K.T., Naito, S. and Takeda, G. (1994) cDNA cloning of regeneration-specific genes in rice by differential screening of randomly amplified cDNAs using RAPD primers. Plant Cell Physiol. 35, 1003-1009.

    CAS  PubMed  Google Scholar 

  19. Ito, T., Kito, K., Adati, N., Mitsui, Y., Hagiwara, H. and Sakaki, Y. (1994) Fluorescent differential display: arbitrarily primed RT-PCR fingerprinting on an automated DNA sequencer. FEBS Lett. 351, 231-236.

    Article  CAS  PubMed  Google Scholar 

  20. Fischer, A., Saedler, H. and Theissen, G. (1995) Restriction fragment length polymorphism-coupled domain-directed differential display: a highly efficient technique for expression analysis of multigene families. Proc. Natl. Acad. Sci. USA 92, 5331-5335.

    Article  CAS  PubMed  Google Scholar 

  21. Yang, S. and Liang, P. (2004) Global analysis of gene expression by differential display: a mathematical model. Mol. Biotechnol. 27, 197-208.

    Article  CAS  PubMed  Google Scholar 

  22. Gaxiola, R.A., Fink, G.R., Hirschi, K.D. (2002) Genetic manipulation of vacuolar proton pumps and transporters. Plant Physiol. 129, 967-973.

    Article  CAS  PubMed  Google Scholar 

  23. Ueda, A., Inada, M. and Takabem, T, (2003) Evaluation of abiotic stress tolerance in transgenic Arabidopsis overexpressing barley proline transporter (HvProT) gene. Plant Cell Physiol. 44, S47 (Supplement).

    Google Scholar 

  24. Aono, M., Saji, H., Fujiyama, K., Sugita, M., Kondo, K. and Tanaka, K. (1995) Decrease in activity of glutathione reductase enhances paraquat sensitivity in transgenic Nicotiana tabacum. Plant Physiol. 107, 645-648.

    CAS  PubMed  Google Scholar 

  25. Garg, A.K., Kim, J.K., Owens, T.G., Ranwala, A.P., Choi, Y.D., Kochian, L.V. and Wu, R.J. (2002) Trehalose accumulation in rice plants confers high tolerance levels to different abiotic stresses. Proc. Natl. Acad. Sci. USA 99, 15898-15903.

    Article  CAS  PubMed  Google Scholar 

  26. Rausell, A., Kanhonou, R., Yenush, L., Serrano, R. and Ros, R. (2003) The translation initiation factor eIF1A is an important determinant in the tolerance to NaCl stress in yeast and plants. Plant J. 34, 257-267.

    Article  CAS  PubMed  Google Scholar 

  27. Yamamotom, Y., Ueda, A. and Takabe, T. (2001) Gene cloning and characterization of salt-inducible aldehyde oxidase in barley. Proceeding of 12th International Congress on Photosynthesis.

    Google Scholar 

  28. Muramoto, Y., Nakamura, T., Alvarez-Nakase, A. and Takabe, T. (1998) Isolation of salt-induced cDNA clones in barley leaves using differential display. In Photosynthesis: Mechanisms and Effects (Garab G. ed), Kluwer Academic Publishers, Vol. IV, pp. 3043-3046.

    Google Scholar 

  29. Nakamura, T., Muramoto, Y., Yokota, S., Ueda, A. and Takabe, T. (2004) Structural and transcriptional characterization of a salt-responsive gene encoding putative ATP-dependent RNA helicase in barley. Plant Sci. 167, 63-70.

    Article  CAS  Google Scholar 

  30. Saijo, Y., Hata, S., Kyozuka, J., Shimamoto, K. and Izui, K. (2000) Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants. Plant J. 23, 319-327.

    Article  CAS  PubMed  Google Scholar 

  31. Pnueli, L., Liang, H., Rozenberg, M. and Mittler, R. (2003) Growth suppression, altered stomatal responses, and augmented induction of heat shock proteins in cytosolic ascorbate peroxidase (Apx1)-deficient Arabidopsis plants. Plant J. 34, 187-203.

    Article  CAS  PubMed  Google Scholar 

  32. Shi, W.M., Muramoto, Y., Ueda, A. and Takabe, T. (2001) Cloning of peroxisomal ascorbate peroxidase gene from barley and enhanced thermotolerance by overexpressing in Arabidopsis thaliana. Gene 273, 23-27.

    Article  CAS  PubMed  Google Scholar 

  33. Panchuk, II., Volkov, R.A. and Schoffl, F. (2002) Heat stress- and heat shock transcription factor-dependent expression and activity of ascorbate peroxidase in Arabidopsis. Plant Physiol. 129, 838-853.

    Article  CAS  PubMed  Google Scholar 

  34. Delauney, A.J. and Verma, D.P. (1993) Proline biosynthesis and osmoregulation in plants. Plant J. 4, 215-223.

    Article  CAS  Google Scholar 

  35. Maggio, A., Miyazaki, S., Veronese, P., Fujita, T., Ibeas, J.I., Damsz, B., Narasimhan, M.L., Hasegawa, P.M., Joly, R.J. and Bressan, R.A. (2002) Does proline accumulation play an active role in stress-induced growth reduction? Plant J. 31, 699-712.

    Article  CAS  PubMed  Google Scholar 

  36. Schwacke, R., Grallath, S., Breitkreuz, K.E., Stransky, E., Stransky, H., Frommer, W.B. and Rentsch, D. (1999) LeProT1, a transporter for proline, glycine betaine, and gamma-amino butyric acid in tomato pollen. Plant Cell 11, 377-392.

    Article  CAS  PubMed  Google Scholar 

  37. Narita, Y., Taguchi, H., Nakamura, T., Ueda, A., Shi, W. and Takabe, T. (2004) Characterization of the salt-inducible methionine synthase from barley leaves. Plant Sci. 167, 1009-1016.

    Article  CAS  Google Scholar 

  38. Zeh, M., Leggewie, G., Hoefgen, R. and Hesse, H. (2002) Cloning and characterization of a cDNA encoding a cobalamin-independent methionine synthase from potato (Solanum tuberosum L.). Plant Mol. Biol. 48, 255-265.

    Article  CAS  PubMed  Google Scholar 

  39. Inada, M., Ueda, A., Shi, W. and Takabe, T. (2005) A stress-inducible plasma membrane protein 3 (AcPMP3) in a monocotyledonous halophyte, Aneurolepidium chinense, regulates cellular Na+ and K+ accumulation under salt stress. Planta 220, 395-402.

    Article  CAS  PubMed  Google Scholar 

  40. Ueda, A., Kathiresan, A., Inada, M., Narita’Y., Nakamura, T., Shi, W., Takabe, T. and Bennett, J. (2004) Osmotic stress in barley regulates expression of a different set of genes than salt stress does. J. Exp. Bot. 55, 2213-2218.

    Article  CAS  PubMed  Google Scholar 

  41. Ueda, A., Kathiresan, A., Bennett, J. and Takabe, T. (2004) Comparative expression analyses using barley cDNA microarray reveal divergent biological responses in barley and rice under salt stress. Submitted.

    Google Scholar 

  42. Navarre, C. and Goffeau, A. (2000) Membrane hyperpolarization and salt sensitivity induced by deletion of PMP3, a highly conserved small protein of yeast plasma membrane. EMBO J. 19, 2515-2524.

    Article  CAS  PubMed  Google Scholar 

  43. Mitsuya, S., Taniguchi, M., Miyake, H. and Takabe, T. (2005) Disruption of RCI2A leads to over-accumulation of Na+ and increased salt sensitivity in Arabidopsis thaliana plants. Planta in press.

    Google Scholar 

  44. Seki, M., Narusaka, M., Abe, H., Kasuga, M., Yamaguchi-Shinozaki, K., Carninci, P., Hayashizaki, Y. and Shinozaki, K. (2001) Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell 13, 61-72.

    Article  CAS  PubMed  Google Scholar 

  45. Kawasaki, S., Borchert, C., Deyholos, M., Wang, H., Brazille, S., Kawai, K., Galbraith, D. and Bohnert, H.J. (2001) Gene expression profiles during the initial phase of salt stress in rice. Plant Cell 13, 889-905.

    Article  CAS  PubMed  Google Scholar 

  46. Seki, M., Narusaka, M., Ishida, J., Nanjo, T., Fujita, M., Oono, Y., Kamiya, A., Nakajima, M., Enju, A., Sakurai, T., Satou, M., Akiyama, K., Taji, T., Yamaguchi-Shinozaki, K., Carninci, P., Kawai, J., Hayashizaki, Y. and Shinozaki, K. (2002) Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J. 31, 279-292.

    Article  CAS  PubMed  Google Scholar 

  47. Gale, M.D. and Devos, K.M. (1998) Comparative genetics in the grasses. Proc. Natl. Acad. Sci. USA 95, 1971-1974.

    Article  CAS  PubMed  Google Scholar 

  48. Van Zyl, L., von Arnold, S., Bozhkov, P.V., Chen, Y., Egertsdotter, U., MacKay, J., Sederoff, R.R., Shen, J., Zelena, L. and Clapham, D.H (2002) Heterologous array analysis in Pinacea: hybridization of Pinus taeda cDNA arrays with cDNA from needles and embryogenic cultures of P. taeda, P. sylvestris or Picea abies. Comp Funct Genomics 3, 306-318.

    Article  CAS  PubMed  Google Scholar 

  49. Aharon, R., Shahak, Y., Wininger, S., Bendov, R., Kapulnik, Y. and Galili, G. (2003) Overexpression of a plasma membrane aquaporin in transgenic tobacco improves plant vigor under favorable growth conditions but not under drought or salt stress. Plant Cell 15, 439-447.

    Article  CAS  PubMed  Google Scholar 

  50. Rhodes, D. and Hanson, A.D. (1993) Quaternary ammonium and tertiary sulfonium compounds in higher plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 44, 357-384.

    Article  CAS  Google Scholar 

  51. Nakamura, T., Nomura, M., Mori, H., Jagendorf, A.T., Ueda, A. and Takabe, T. (2001) An isozyme of betaine aldehyde dehydrogenase in barley. Plant Cell Physiol. 42, 1088-1092.

    Article  CAS  PubMed  Google Scholar 

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UEDA, A., MITSUYA, S., TAKABE, T. (2006). Identification of salt-responsive genes in monocotyledonous plants: from transcriptome to functional. In: RAI, A.K., TAKABE, T. (eds) Abiotic stress tolerance in plants. Springer, Dordrecht. https://doi.org/10.1007/1-4020-4389-9_2

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