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The Outlines Of Bacterial Evolution

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Origins

Part of the book series: Cellular Origin, Life in Extreme Habitats and Astrobiology ((COLE,volume 6))

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8. Reference List

  • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., and Schleifer, K.H. (1992) The Prokaryotes New York: Springer-Verlag.

    Google Scholar 

  • Brendel, V., Brocchieri, L., Sandler, S.J., Clark, A.J., and Karlin, S. (1997) Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms J. Mol. Evol. 44: 528–541.

    Article  CAS  Google Scholar 

  • Brown, J.R., Doolittle, W.F. (1995) Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications Proc. Natl. Acad. Sci. USA 92: 2441–2445.

    CAS  Google Scholar 

  • Brown, J.R., Doolittle, W.F. (1997) Archaea and the prokaryote-to-eukaryote transition Microbiol. Mol. Biol. Rev. 61: 456–502.

    CAS  Google Scholar 

  • Brown, J.R, Douady, C.J., Italia, M.J., Marshall, W.E., Stanhope, M.J. (2001) Universal trees based on large combined protein sequence data sets Nat. Genet. 28: 281–285.

    Article  CAS  Google Scholar 

  • Buchanan, R.E. (1925) General Systematic Bacteriology Baltimore: Williams and Wilkins.

    Google Scholar 

  • Daubin, V., Gouy, M., and Perriere, G. (2002) A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history Genome Res 12: 1080–1090.

    Article  CAS  Google Scholar 

  • Doolittle, W.F. (1999) Phylogenetic classification and the universal tree Science 284: 2124–2128.

    Article  CAS  Google Scholar 

  • Eisen, JA. (1995) The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species J. Mol. Evol. 41: 1105–1123.

    Article  CAS  Google Scholar 

  • Fox, G.E., Stackebrandt, E., Hespell, R.B., Gibson, J., Maniloff, J., Dyer, T.A., Wolfe, R.S., Balch, W.E., Tanner, R.S., Magrum, L.J., Zablen, L.B., Blakemore, R, Gupta, R., Bonen, L., Lewis, B.J., Stahl, D.A., Luehrsen, K.R., Chen, K.N., and Woese, C.R. (1980) The phylogeny of prokaryotes Science 209: 457–463.

    CAS  Google Scholar 

  • Gogarten, J.P., Doolittle, W.F., and Lawrence, J.G. (2002) Prokaryotic evolution in light of gene transfer Mol Biol Evol. 19: 2226–2238.

    CAS  Google Scholar 

  • Gram, C. (1884) Ueber die isolierte farbung der Schizomyceten in Schnitt und Trockenpraparaten Fortschr. Med. 2: 185–189.

    Google Scholar 

  • Griffiths, E., Gupta, R.S. (2002) Protein signatures distinctive of chlamydial species: Horizontal transfer of cell wall biosynthesis genes glmU from Archaebacteria to Chlamydiae, and murA between Chlamydiae and Streptomyces Microbiology 148: 2541–2549.

    CAS  Google Scholar 

  • Gupta, R.S. (1995) Evolution of the chaperonin families (Hsp60, Hsp10 and Tcp-1) of proteins and the origin ofeukaryotic cells Mol. Microbiol. 15: 1–11.

    CAS  Google Scholar 

  • Gupta, R.S. (1998a) Protein Phylogenies and Signature Sequences: A Reappraisal of Evolutionary Relationships Among Archaebacteria, Eubacteria, and Eukaryotes Microbiol. Mol. Biol. Rev. 62: 1435–1491.

    CAS  Google Scholar 

  • Gupta, R.S. (1998b) What are archaebacteria: Life’s third domain or monoderm prokaryotes related to Grampositive bacteria? A new proposal for the classification of prokaryotic organisms Mol. Microbiol. 29: 695–708.

    Article  CAS  Google Scholar 

  • Gupta, R.S. (1998c) Life’s third domain (Archaea): An established fact or an endangered paradigm? A new proposal for classification of organisms based on protein sequences and cell structure Theor. Popul. Biol. 54: 91–104.

    Article  CAS  Google Scholar 

  • Gupta, R.S. (2000a) The Natural Evolutionary Relationships Among Prokaryotes Crit. Rev. Microbiol. 26: 111–131.

    Article  CAS  Google Scholar 

  • Gupta, R.S. (2000b) The phylogeny of Proteobacteria: relationships to other eubacterial phyla and eukaryotes FEMS Microbiol Rev. 24: 367–402.

    CAS  Google Scholar 

  • Gupta, R.S. (2001) The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins International Microbiol. 4: 187–202.

    Article  CAS  Google Scholar 

  • Gupta, R.S. (2002) Phylogeny of Bacteria: Are we now close to understanding it? ASM News 68: 284–291.

    Google Scholar 

  • Gupta, R.S., Bustard, K., Falah, M., and Singh, D. (1997) Sequencing of heat shock protein 70 (DnaK) homologs from Deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes J. Bacteriol. 179: 345–357.

    CAS  Google Scholar 

  • Gupta, R.S., Griffiths, E. (2002) Critical Issues in Bacterial Phylogenies Theor. Popul. Biol. 61: 423–434.

    Article  Google Scholar 

  • Gupta, R.S., Johari, V. (1998) Signature sequences in diverse proteins provide evidence of a close evolutionary relationship between the Deinococcus-Thermus group and Cyanobacteria J. Mol. Evol. 46: 716–720.

    Article  CAS  Google Scholar 

  • Gupta, R.S., Singh, B. (1992) Cloning of the HSP70 gene from Halobacterium marismortui: relatedness of archaebacterial HSP70 to its eubacterial homologs and a model for the evolution of the HSP70 gene J. Bacteriol. 174: 4594–4605.

    CAS  Google Scholar 

  • Iwabe, N., Kuma, K., Hasegawa, M., Osawa, S., and Miyata, T. (1989) Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes Proc. Natl. Acad. Sci. USA 86: 9355–9359.

    CAS  Google Scholar 

  • Jain, R., Rivera, M., and Lake, J.A. (1999) The complexity hypothesis Proc. Natl, Acad. Sci. USA 96: 3801–3806.

    Article  CAS  Google Scholar 

  • Kluyver, A.J., van Niel, C.B. (1936) Prospects for a natural system of classification of bacteria Zentralblatt fur Bakteriologie, Parasitenkunde und Infektionskrankheiten II 94: 369–403.

    Google Scholar 

  • Koonin, E.V., Makarova, K.S., and Aravind, L. (2001) Horizontal gene transfer in prokaryotes: quantification and classification Annu. Rev. Microbiol. 55 709–742.

    Article  CAS  Google Scholar 

  • Ludwig, W., Klenk, H.-P. (2001) Overview: A phylogenetic backbone and taxonomic framework for prokaryotic systamatics. In: D.R. Boone and R.W. Castenholz (eds.) Bergey’s Manual of Systematic Bacteriology, Berlin: Springer-Verlag, pp. 49–65.

    Google Scholar 

  • Ludwig, W., Schleifer, K.H. (1999) Phylogeny of Bacteria beyond the 16S rRNA Standard ASM News 65: 752–757.

    Google Scholar 

  • Lyons, S.L. (2002) Thomas Kuhn is alive and well: the evolutionary relationships of simple life form-a paradigm under siege ? Perspect. Biol. Med. 45: 359–376.

    Google Scholar 

  • Murray, R.G.E. (1986b) Family II. Deinococcaceae Brooks and Murray 1981, 356VP. In: P.H.A. Sneath, N.S. Mair, M.E. Sharpe, and J.G. Holt (eds.) Bergey’s Manual of Systematic Bacteriology, Baltimore: The Williams and Wilkins, pp. 1035–1043.

    Google Scholar 

  • Murray, R.G.E. (1986a) The Higher Taxa, or, A Place for Everything? In: P.H.A. Sneath, N.S. Mair, M.E. Sharpe, and J.G. Holt (eds.) Bergey’s Manual of Systematic Bacteriology, Baltimore: The Williams and Wilkins, pp. 31–34.

    Google Scholar 

  • Olsen, G.J., Woese, C.R. (1993) Ribosomal RNA: a key to phylogeny. FASEB Journal. 7: 113–123.

    CAS  Google Scholar 

  • Olsen, G.J., Woese, C.R., and Overbeek, R. (1994) The winds of (evolutionary) change: breathing new life into microbiology. J. Bacteriol. 176: 1–6.

    CAS  Google Scholar 

  • Orla-Jensen, S. (1909) Die Hauptlinien de natürlichen Baketeriensystems nebst einer Uebersicht der Gärungsphenomene. Zentr. Bakt. Parasitenk. II 22: 305–346.

    Google Scholar 

  • Stanier, R.Y. (1941) The main outlines of bacterial classification J. Bacteriol. 42: 437–466.

    CAS  Google Scholar 

  • Stanier, R.Y., Adelberg, E.A., and Ingraham, J.L. (1976) The Microbial World New Jersey: Prentice-Hall Inc., pp. 1–871.

    Google Scholar 

  • Stanier, R.Y., van Niel, C.B. (1962) The concept of a bacterium Archiv fur Mikrobiologie 42: 17–35.

    Article  CAS  Google Scholar 

  • Viale, A.M., Arakaki, A.K., Soncini, F.C., and Ferreyra, R.G. (1994) Evolutionary relationships among eubacterial groups as inferred from GroEL (chaperonin) sequence comparisons Int. J. Syst. Bacteriol. 44: 527–533.

    Article  CAS  Google Scholar 

  • Woese, C.R. (1987) Bacterial evolution. Microbiol. Rev. 51: 221–271.

    CAS  Google Scholar 

  • Woese, C.R. (1991) The use of ribosomal RNA in reconstructing evolutionary relationships among bacteria. In: R.K. Selander, A.G. Clark and T.S. Whittmay (eds.) Evolution at Molecular Level, Sunderland, MA: Sinauer Associates Inc., pp. 1–24.

    Google Scholar 

  • Woese, C.R. (1992) Prokaryote Systematics: The Evolution of a Science. In: A. Balows, H.G. Trüper, M. Dworkin, W. Harder and K.H. Schleifer (eds.) The Prokaryotes, New York: Springer-Verlag, pp. 3–18.

    Google Scholar 

  • Woese, C.R. (1998) The universal ancestor Proc. Natl. Acad. Sci. USA 95: 6854–6859.

    Article  CAS  Google Scholar 

  • Woese, C.R., Kandler, O., and Wheelis, M.L. (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya Proc. Natl. Acad. Sci. USA 87: 4576–4579.

    CAS  Google Scholar 

  • Wolf, Y.I., Rogozin, I.B., Grishin, N.V., Tatusov, R.L., and Koonin, E.V. (2001) Genome trees constructed using five different approaches suggest new major bacterial clades BMC Evol Biol. 1: 8

    Article  CAS  Google Scholar 

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Authors and Affiliations

  1. Department of Biochemistry, McMaster University, Hamilton, ON, Canada, L8N 3Z5

    Radhey S. Gupta

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  1. Radhey S. Gupta
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Editors and Affiliations

  1. Hebrew University of Jerusalem, Israel

    Joseph Seckbach

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Gupta, R.S. (2004). The Outlines Of Bacterial Evolution. In: Seckbach, J. (eds) Origins. Cellular Origin, Life in Extreme Habitats and Astrobiology, vol 6. Springer, Dordrecht. https://doi.org/10.1007/1-4020-2522-X_17

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