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REFERENCES
Beer, D. G., S. L. Kardia, C. C. Huang, T. J. Giordano, A. M. Levin, D. E. Misek, L. Lin, G. Chen, T. G. Gharib, D. G. Thomas, M. L. Lizyness, R. Kuick, S. Hayasaka, J. M. Taylor, M. D. Iannettoni, M. B. Orringer and S. Hanash (2002). Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat Med 8(8): 816–24.
Bhattacharjee, A., W. G. Richards, J. Staunton, C. Li, S. Monti, P. Vasa, C. Ladd, J. Beheshti, R. Bueno, M. Gillette, M. Loda, G. Weber, E. J. Mark, E. S. Lander, W. Wong, B. E. Johnson, T. R. Golub, D. J. Sugarbaker and M. Meyerson (2001). Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proc Natl Acad Sci U S A 98(24): 13790–5.
Borczuk, A. C., L. Gorenstein, K. L. Walter, A. A. Assaad, L. Wang and C. A. Powell (2003). Non-small-cell lung cancer molecular signatures recapitulate lung developmental pathways. Am J Pathol 163(5): 1949–60.
Butler, D. (2000). Europe joins race to turn the Internet info one vast computer. Nature 403:213.
Chen, G., T. G. Gharib, H. Wang, C. C. Huang, R. Kuick, D. G. Thomas, K. A. Shedden, D. E. Misek, J. M. Taylor, T. J. Giordano, S. L. Kardia, M. D. Iannettoni, J. Yee, P. J. Hogg, M. B. Orringer, S. M. Hanash and D. G. Beer (2003). Protein profiles associated with survival in lung adenocarcinoma. Proc Natl Acad Sci U S A 100(23): 13537–42.
Cho, N. H., K. P. Hong, S. H. Hong, S. Kang, K. Y. Chung and S. H. Cho (2004). MMP expression profiling in recurred stage IB lung cancer. Oncogene 23(3): 845–51.
Fromigue, O., K. Louis, M. Dayem, J. Milanini, G. Pages, S. Tartare-Deckert, G. Ponzio, P. Hofman, P. Barbry, P. Auberger and B. Mari (2003). Gene expression profiling of normal human pulmonary fibroblasts following coculture with non-small-cell lung cancer cells reveals alterations related to matrix degradation, angiogenesis, cell growth and survival. Oncogene 22(52): 8487–97.
Garber, M. E., O. G. Troyanskaya, K. Schluens, S. Petersen, Z. Thaesler, M. Pacyna-Gengelbach, M. van de Rijn, G. D. Rosen, C. M. Perou, R. I. Whyte, R. B. Altman, P. O. Brown, D. Botstein and I. Petersen (2001). Diversity of gene expression in adenocarcinoma of the lung. Proc Natl Acad Sci U S A 98(24): 13784–9.
Haedicke, W., H. H. Popper, C. R. Buck and K. Zatloukal (2003). Automated evaluation and normalization of immunohistochemistry on tissue microarrays with a DNA microarray scanner. Biotechniques 35(1): 164–8.
Howard, B. A., M. Z. Wang, M. J. Campa, C. Corro, M. C. Fitzgerald and E. F. Patz, Jr. (2003). Identification and validation of a potential lung cancer serum biomarker detected by matrix-assisted laser desorption/ionization-time of flight spectra analysis. Proteomics 3(9): 1720–4.
Janne, P. A., C. Li, X. Zhao, L. Girard, T. H. Chen, J. Minna, D. C. Christiani, B. E. Johnson and M. Meyerson (2004). High-resolution single-nucleotide polymorphism array and clustering analysis of loss of heterozygosity in human lung cancer cell lines. Oncogene 23(15): 2716–26.
Jemal, A., T. Murray, A. Samuels, A. Ghafoor, E. Ward and M. J. Thun (2003). Cancer statistics, 2003. CA Cancer J Clin 53(1): 5–26.
Johnson, K. F. and S. M. Lin (2003). Methods of microarray data analysis III: papers from CAMDA’ 02. Boston, Mass., Kluwer Academic Publishers;.
Kikuchi, T., Y. Daigo, T. Katagiri, T. Tsunoda, K. Okada, S. Kakiuchi, H. Zembutsu, Y. Furukawa, M. Kawamura, K. Kobayashi, K. Imai and Y. Nakamura (2003). Expression profiles of non-small cell lung cancers on cDNA microarrays: identification of genes for prediction of lymph-node metastasis and sensitivity to anti-cancer drugs. Oncogene 22(14): 2192–205.
Lin, S.M. and K. F. Johnson (2002). Methods of microarray data analysis: papers from CAMDA’ 00. Boston, Kluwer Academic Publishers.
Lin, S. M. and K. F. Johnson (2002). Methods of microarray data analysis II: papers from CAMDA’ 01. Boston, Kluwer Academic Publishers.
Massion, P. P., W. L. Kuo, D. Stokoe, A. B. Olshen, P. A. Treseler, K. Chin, C. Chen, D. Polikoff, A. N. Jain, D. Pinkel, D. G. Albertson, D. M. Jablons and J. W. Gray (2002). Genomic copy number analysis of non-small cell lung cancer using array comparative genomic hybridization: implications of the phosphatidylinositol 3-kinase pathway. Cancer Res 62(13): 3636–40.
Nakamura, H., H. Saji, A. Ogata, M. Hosaka, M. Hagiwara, T. Saijo, N. Kawasaki and H. Kato (2003). cDNA microarray analysis of gene expression in pathologic Stage IA nonsmall cell lung carcinomas. Cancer 97(11): 2798–805.
Nature News (2004). Making data dreams come true. Nature 428: 239.
Pedersen, N., S. Mortensen, S. B. Sorensen, M. W. Pedersen, K. Rieneck, L. F. Bovin and H. S. Poulsen (2003). Transcriptional gene expression profiling of small cell lung cancer cells. Cancer Res 63(8): 1943–53.
Russo, G., P. P. Claudio, Y. Fu, P. Stiegler, Z. Yu, M. Macaluso and A. Giordano (2003). pRB2/p130 target genes in non-small lung cancer cells identified by microarray analysis. Oncogene 22(44): 6959–69.
Singhal, S., K. M. Amin, R. Kruklitis, M. B. Marshall, J. C. Kucharczuk, P. DeLong, L. A. Litzky, L. R. Kaiser and S. M. Albelda (2003). Differentially expressed apoptotic genes in early stage lung adenocarcinoma predicted by expression profiling. Cancer Biol Ther 2(5): 566–71.
Sugita, M., M. Geraci, B. Gao, R. L. Powell, F. R. Hirsch, G. Johnson, R. Lapadat, E. Gabrielson, R. Bremnes, P. A. Bunn and W. A. Franklin (2002). Combined use of oligonucleotide and tissue microarrays identifies cancer/testis antigens as biomarkers in lung carcinoma. Cancer Res 62(14): 3971–9.
Tableman, M. and J. S. Kim (2004). Survival analysis using S: analysis of time-to-event data. Boca Raton, Fla., Chapman & Hall/CRC.
Wigle, D. A., I. Jurisica, N. Radulovich, M. Pintilie, J. Rossant, N. Liu, C. Lu, J. Woodgett, I. Seiden, M. Johnston, S. Keshavjee, G. Darling, T. Winton, B. J. Breitkreutz, P. Jorgenson, M. Tyers, F. A. Shepherd and M. S. Tsao (2002). Molecular profiling of non-small cell lung cancer and correlation with disease-free survival. Cancer Res 62(11): 3005–8.
Wigle, D. A., M. Tsao and I. Jurisica (2004). Making sense of lung-cancer gene-expression profiles. Genome Biol 5(2): 309.
Zerhouni, E. (2003). Medicine. The NIH Roadmap. Science 302(5642): 63–72.
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(2005). Introduction. In: Shoemaker, J.S., Lin, S.M. (eds) Methods of Microarray Data Analysis. Springer, Boston, MA. https://doi.org/10.1007/0-387-23077-7_1
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