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Part of the book series: Developments in Paleoenvironmental Research ((DPER,volume 3))

Summary

Fossil pigments often preserve in lake sediments long after the morphological remains of most algae and bacteria are lost. In principle, analyses of sedimentary carotenoids, chlorophylls, their derivatives and other lipid-soluble pigments can be used to reconstruct historical changes in primary-producer community abundance and composition, so long as biomarkers are accurately isolated, identified and quantified. This chapter summarizes a series of practical techniques in order to familarize investigators with the potential and pitfalls inherent in fossil pigment analyses. First we describe the common uses of sedimentary pigments in paleolimnology and summarize knowledge of pigment biogeochemistry and taphonomy, especially as concerns water-column processes. Second we review a series of practical procedures to collect, isolate and quantify pigments, particularly by high performance liquid chromatography. We conclude with a summary of recent advances in pigment identification using various mass spectrometric techniques.

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References

  • Belcher, J. H. & G. E. Fogg, 1964. Chlorophyll derivatives in the sediments of two English lakes. In Miyaka, Y. & T. Koyama (eds.) Recent Researches in the Field of Hydrosphere, Atmosphere and Nuclear Geochemistry. Maruzen co. Tokyo: 39–48.

    Google Scholar 

  • Bernhard, K., 1995. Column chromatography. In Briton, G., S. Liaaen-Jensen & H. Pfander (eds.) Carotenoids. Vol. 1A. Isolation and Analyis. Birkhäuser, Boston: 117–130.

    Google Scholar 

  • Bernhard, K. & M. Grosjean, 1995. Infared spectroscopy. In Britton, G., S. Liaaen-Jensen & H. Pfander (eds.) Caroteniods: Volume 1B: Spectroscopy. Birkhäuser Verlag, Boston: 117–134.

    Google Scholar 

  • Bianchi, T. S., S. Findlay & R. Dawson, 1993. Organic-matter sources in the water column and sediments of the Hudson River estuary—the use of plant pigments as tracers. Est. Coast. Shelf Sci. 36: 359–376.

    Google Scholar 

  • Bjørnland, T., 1997. UV/Visible spectroscopy of carotenoids. In Jeffrey, S. W., R. F. C. Mantoura & S. W. Wright (eds.) Phytoplankton Pigments in Oceanography. UNESCO Publishing, Paris: 578–594.

    Google Scholar 

  • Borman, S., 1998. Chemistry crystallizes into modern science. Chemical & Engineering News, 12: 39–75.

    Google Scholar 

  • Britton, G., 1995. In Britton, G., S. Liaaen-Jensen & H. Pfander (eds.) Caroteniods: Volume 1B: Spectroscopy. Birkhäuser Verlag, Boston: 13–62.

    Google Scholar 

  • Britton, G., S. Liaaen-Jensen & H. Pfander, 1995a. Carotenoids: Volume 1 A: Isolation and Analysis. Birkhäuser Verlag, Boston, 328 pp.

    Google Scholar 

  • Britton, G., S. Liaaen-Jensen & H. Pfander, 1995b. Carotenoids: Volume 1B: Spectroscopy. Birkhäuser Verlag, Boston, 360 pp.

    Google Scholar 

  • Brown, S. R., 1968. Bacterial carotenoids from freshwater sediments. Limnol. Oceanogr. 13: 233–241.

    Google Scholar 

  • Brown, S. R., 1969. Paleolimnological evidence from fossil pigments. Mitt. Internat. Verein. Limnol. 17: 95–103.

    Google Scholar 

  • Brown, S. R. & B. Colman, 1963. Oscillaxanthin in lake sediments. Limnol. Oceanogr. 8: 352–353.

    Google Scholar 

  • Brown, S. R., R. J. Daley & R. N. McNeely, 1977. Composition and stratigraphy of fossil phorbin derivatives of Little Round Lake. Ontario. Limnol. Oceanogr. 22: 336–348.

    Google Scholar 

  • Brown, S. R., H. J. McIntosh & J. P. Smol, 1984. Recent paleolimnology of a meromictic lake: Fossil pigments of photosynthetic bacteria. Int. Ver. Theor. Angew. Limnol. Verh. 22: 1357–1360.

    Google Scholar 

  • Caccamese, S. & D. Garozzo, 1990. Odd-electron molecular ion and loss of toluene in fast atom bombardment mass spectra of some carotenoids. Org. Mass Spectrom. 25(3): 137–140.

    Article  Google Scholar 

  • Caprioli, R. M., T. Fan & J. S. Cottrel, 1986. Continuous flow sample probe for fast atom bombardment mass spectrometry. Anal. Chem. 58: 2949–2954.

    Google Scholar 

  • Carpenter, S. R. & P. R. Leavitt, 1991. Temporal variation in a paleolimnological record arising from a trophic cascade. Ecology 72: 277–285.

    Google Scholar 

  • Carpenter, S., M. Elser & J. Elser, 1986. Chlorophyll production, degradation and sedimentation: Implications for palaeolimnology. Limnol. Oceanogr. 31: 112–124.

    Google Scholar 

  • Carpenter, S. R., P. R. Leavitt, J. J. Elser & M. M. Elser, 1988. Chlorophyll budgets: Response to food web manipulation. Biogeochemistry 6: 79–90.

    Article  Google Scholar 

  • Cohen, A. S., 2002. Paleolimnology: History and Evolution of Lake Systems. Oxford University Press, Oxford, 350 pp.

    Google Scholar 

  • Cuddington, K. & P. R. Leavitt, 1999. An individual-based model of pigment flux in lakes: Implications for organic biogeochemistry and paleoecology. Can. J. Fish. Aquat. Sci. 56: 1964–1977.

    Article  Google Scholar 

  • Daley, R. J., S. R. Brown & R. N. McNeely, 1977. Chromatographic and SCDP measurements of fossil phorbins and the postglacial history of Little Round Lake. Ontario. Limnol. Oceanogr. 22: 349–360.

    Google Scholar 

  • Damste, J. S. S. & M. P. Koopmans, 1997. The fate of carotenoids in sediments: a Review. Pure Appl. Chem. 69: 2067–2074.

    Google Scholar 

  • Davies, B. H., 1976. Carotenoids. In Goodwin, T. W. (ed.) Chemistry and Biochemistry of Plant Pigments. Volume I. Academic Press, N.Y., 870 pp.

    Google Scholar 

  • Descy, J. P., T. M. Frost & J. P. Hurley, 1999. Assessment of grazing by the freshwater copepod Diatpomus minutus using carotenoid pigments: a Caution. J. Plankton Res. 21: 127–145.

    Article  Google Scholar 

  • Eckardt, C. B., B. J. Keely & J. R. Maxwell, 1991a. Identification of chlorophyll transformation products in a lake sediment by combined liquid chromatography-mass spectrometry. J. Chromatog. 557: 271–278.

    Article  Google Scholar 

  • Eckardt, C. B., G. E. S. Pearce, B. J. Keely, G. Kowalewska, R. Jaffe & J. R. Maxwell, 1991b. A widespread chlorophyll transformation pathway in the aquatic environment. Adv. Org. Geochem. 19: 217–227.

    Google Scholar 

  • Englert, G., 1995. NMR spectroscopy. In Britton, G., S. Liaaen-Jensen & H. Pfander (eds.) Caroteniods: Volume 1b, Spectroscopy. Birkhäuser Verlag, Boston: 147–260.

    Google Scholar 

  • Enzell, C. R. & S. Back, 1995. Mass Spectrometry. In Britton, G., S. Liaaen-Jensen & H. Pfander (eds.) Caroteniods: Volume 1b, Spectroscopy. Birkhäuser Verlag, Boston: 261–320.

    Google Scholar 

  • Eugster, C. H., 1995. Chemical derivatization: Microscale tests for the presence of common functional groups in carotenoids. In Briton, G., S. Liaaen-Jensen & H. Pfander (eds.) Carotenoids. Vol. 1A. Isolation and Analyis. Birkhäuser, Boston: 71–80.

    Google Scholar 

  • Fogg, G. E. & J. H. Belcher, 1961. Pigments from the bottom deposits of an English lake. New Phytol. 60: 129–138.

    Google Scholar 

  • Foppen, F. H., 1971. Tables for the identification of carotenoid pigments. Chromatog. Rev. 14: 133–298.

    Article  Google Scholar 

  • Fox, D. L., 1944. Biochemical fossils. Science 100: 111–113.

    Google Scholar 

  • Fox, D. L., D. M. Updegraff & G. D. Novelli, 1944. Carotenoid pigments in the ocean floor. Arch. Biochem. 5: 1–23.

    Google Scholar 

  • Goodwin, T. W., 1980a. The Biochemistry of the Carotenoids. Vol. 1. Plants. Chapman and Hall, N.Y., 377 pp.

    Google Scholar 

  • Goodwin, T. W., 1980b. The Biochemistry of the Carotenoids. Vol. 2. Animals. Chapman and Hall, N.Y., 224 pp.

    Google Scholar 

  • Gorham, E. & J. E. Sanger, 1975. Fossil pigments in Minnesota lake sediments and their bearing upon the balance between terrestrial and aquatic inputs to sedimentary organic matter. Vehr. Inernat. Verein. Limnol. 19: 2267–2273.

    Google Scholar 

  • Griffiths, M., 1978. Specific blue-green algal carotenoids in the sediments of Esthwaite Water. Limnol. Oceanogr. 23: 777–784.

    Google Scholar 

  • Griffiths, M., P. S. Perrot & W. T. Edmonson, 1969. Oscillaxanthin in the sediments of Lake Washington. Limnol. Oceanogr. 14: 317–326.

    Google Scholar 

  • Guilizzoni, P. & A. Lami, 1992. Historical records of changes in the chemistry and biology of Italian lakes. Mem. Ist. ital. Idrobiol. 50: 61–77.

    Google Scholar 

  • Guilizzoni, P., A. Lami & A. Marchetto, 1992. Plant pigment ratios from lake-sediments as indicators of recent acidification in alpine lakes. Limnol. Oceanogr. 37: 1565–1569.

    Google Scholar 

  • Hall, R. I., P. R. Leavitt, R. Quinlan, A. S. Dixit & J. P. Smol, 1999. Effects of agriculture, urbanization and climate on water quality in the northern Great Plains. Limnol. Oceanogr. 43: 739–756.

    Google Scholar 

  • Harris, P. G., J. F. Carter, M. Head, R. P. Harris, G. Eglinton & J. R. Maxwell, 1995. Identification of chlorophyll transformation products in zooplankton fecal pellets and marine sediment extracts by liquid-chromatography mass-spectrometry atmospheric-pressure chemical-ionization. Rap. Comm. Mass Spec. 9: 1177–1183.

    Google Scholar 

  • Hendry, G. F., J. D. Houghton & S. R. Brown, 1987. The degradation of chlorophyll—a biological enigma. New Phytol. 107: 255–302.

    Google Scholar 

  • Hertzberg, S., S. Liaaen-Jensen & H. W. Siegelman, 1971. The carotenoids of blue-green algae. Phytochemistry 10: 3121–3127.

    Google Scholar 

  • Hodgson, D. A. & P. A. Tyler, 1996. The impact of a hydro-electric dam on the stability of meromictic lakes in south west Tasmania. Australia. Arch. Hydrobiol. 137: 310–323.

    Google Scholar 

  • Hodgson, D. A., S. W. Wright & N. Davies, 1997. Mass spectrometry and reverse phase HPLC methods for the identification of degraded fossil pigments in lake sediments and their application in palaeolimnology. J. Paleolimnol. 18: 335–350.

    Google Scholar 

  • Hodgson, D. A., S. W. Wright, P. A. Tyler & N. Davies, 1998. Analysis of fossil pigments from algae and bacteria in meromictic Lake Fidler, Tasmania, and its application to lake management. J. Paleolimnol. 19: 1–22.

    Article  Google Scholar 

  • Hurley, J. P. & D. E. Armstrong, 1990. Fluxes and transformations of aquatic pigments in Lake Mendota, Wisconsin. Limnol. Oceanogr. 35: 384–398.

    Google Scholar 

  • Hurley, J. P. & P. J. Garrison, 1993. Composition and sedimentation of aquatic pigments associated with deep plankton in lakes. Can. J. Fish. Aquat. Sci. 50: 2713–2722.

    Article  Google Scholar 

  • Hurley, J. P. & C. J. Watras, 1991. Identification of bacteriochlorophylls in lakes via reverse-phase HPLC. Limnol. Oceanogr. 36: 307–315.

    Google Scholar 

  • Isler, O. (ed.), 1971. Carotenoids. Birkhauser-Basel, 932 pp.

    Google Scholar 

  • Jeffrey, S. W., 1967. Quantitative thin layer chromatography of chlorophylls and carotenoids from marine algae. Biochim. Biophys. Acta 162: 271–285.

    Google Scholar 

  • Jeffrey, S. W., 1997. Chlorophyll and carotenoid extinction coefficients. In Jeffrey, S. W., R. F. C. Mantoura & S. W. Wright (eds.) Phytoplankton Pigments in Oceanography. UNESCO Publishing, Paris: 595–596.

    Google Scholar 

  • Jeffrey, S. W., R. F. C. Mantoura & S. W. Wright, 1997a. Phytoplankton pigments in oceanography: guidelines to modern methods. UNESCO Publishing, Paris, 661 pp.

    Google Scholar 

  • Jeffrey, S. W., R. F. C. Mantoura & T. Bjørnland, 1997b. Data for the identification of 47 key phytoplankton pigments. In Jeffrey, S. W., R. F. C. Mantoura & S. W. Wright (eds.) Phytoplankton Pigments in Oceanography. UNESCO Publishing, Paris: 447–559.

    Google Scholar 

  • Jeffrey, S. W., S. W. Wright & M. Zapata, 1999. Recent advances in HPLC pigment analysis of phytoplankton. Mar. Freshwater Res. 50: 879–896.

    Article  Google Scholar 

  • Jensen, A. & S. Liaaen-Jensen, 1968. Quantitative paper chromatography of carotenoids. Acta. Chem. Scanda. 13: 1863–1868.

    Google Scholar 

  • Karrer, P. & E. Jucker, 1950. Carotenoids. Elsevier Publishing, NY, 384 pp.

    Google Scholar 

  • Keely, B. J. & J. R. Maxwell, 1990. Fast atom bombardment and tandem mass spectrometric studies of some functionalised tetrapyrroles derived from chlorophylls a and b. Energy and Fuels 4: 737–741.

    Google Scholar 

  • Koopmans, M. P., J. Koster, H. M. E. van Kann Peters, F. Kenig, S. Schouten, W. A. Hartgers, J. W. deLeeuw & J. S. S. Damste, 1996. Diagenetic and catagenetic products of isorenieratene: Molecular indicators for photic zone anoxia. Geochim. Cosmochim. Acta 60: 4467–4496.

    Google Scholar 

  • Kost, H.-P., 1988. Handbook of Chromatography. Plant pigments. Vol. I Fat-soluble pigments. CRC Press, 328 pp.

    Google Scholar 

  • Krinsky, N. I., 1963. A relationship between partition coefficients of carotenoids and their functional groups. Anal. Biochem. 6: 293–302.

    Article  Google Scholar 

  • Lami, A., F. Niessen, P. Guilizzoni, J. Masaferro & C. A. Belis, 1994. Paleolimnological studies of the eutrophication of volcanic Lake Albano (central Italy). J. Paleolimnol. 10: 181–197.

    Article  Google Scholar 

  • Leavitt, P. R., 1993. A review of factors that regulate carotenoid and chlorophyll deposition and fossil pigment abundance. J. Paleolimnol. 9: 109–127.

    Article  Google Scholar 

  • Leavitt, P. R. & S. R. Carpenter, 1989. Effects of sediment mixing and benthic algal production on fossil pigment stratigraphies. J. Paleolimnol. 2: 147–158.

    Article  Google Scholar 

  • Leavitt, P. R. & S. R. Carpenter, 1990a. Aphotic pigment degradation in the hypolimnion: Implications for sedimentation studies and paleolimnology. Limnol. Oceanogr. 35: 520–534.

    Google Scholar 

  • Leavitt, P. R. & S. R. Carpenter, 1990b. Regulation of pigment sedimentation by herbivory and photo-oxidation. Can. J. Fish. Aquat. Sci. 47: 1166–1176.

    Article  Google Scholar 

  • Leavitt, P. R. & D. L. Findlay, 1994. Comparison of fossil pigments with 20 years of phytoplankton data from eutrophic Lake 227, Experimental Lakes Area, Ontario. Can. J. Fish. Aquat. Sci. 51: 2286–2299.

    Google Scholar 

  • Leavitt, P. R., S. R. Carpenter & J. F. Kitchell, 1989. Whole-lake experiments: The annual record of fossil pigments and zooplankton. Limnol. Oceanogr. 34: 700–717.

    Google Scholar 

  • Leavitt, P. R., P. R. Sanford, S. R. Carpenter & J. F. Kitchell, 1994a. An annual fossil record of production, planktivory and piscivory during whole-lake experiments. J. Paleolimnol. 11: 133–149.

    Article  Google Scholar 

  • Leavitt, P. R., D. E. Schindler, A. J. Paul, A. K. Hardie & D. W. Schindler, 1994b. Fossil pigment records of phytoplankton in trout-stocked alpine lakes. Can. J. Fish. Aquat. Sci. 51: 2411–2423.

    Google Scholar 

  • Leavitt, P. R., B. J. Hann, J. P. Smol, B. A. Zeeb, C. C. Christie, B. Wolfe & H. J. Kling, 1994c. Paleolimnological analysis of whole-lake experiments: An overview of results from Experimental Lakes Area Lake 227. Can. J. Fish. Aquat. Sci. 51: 2322–2332.

    Google Scholar 

  • Leavitt, P. R., R. D. Vinebrooke, D. B. Donald, J. P. Smol & D. W. Schindler, 1997. Past ultraviolet radiation environments in lakes derived from fossil pigments. Nature 388: 457–459.

    Article  Google Scholar 

  • Leavitt, P. R., D. L. Findlay, R. I. Hall & J. P. Smol, 1999. Algal responses to dissolved organic carbon loss and pH decline during whole-lake acidification: Evidence from paleolimnology. Limnol. Oceanogr. 44: 757–773.

    Article  Google Scholar 

  • Liaaen-Jensen, S., 1965. Studies on allylic oxidation of carotenoids. Acta. Chem. Scanda. 19: 1166–1174.

    Google Scholar 

  • Liaaen-Jensen, S., 1971. Isolation, reactions. In Isler, O. (ed.) Caroteniods. Birkhauser-Verlag Bassel: 61–179.

    Google Scholar 

  • Liaaen-Jensen, S., 1979. Carotenoids: a Chemosystematic approach. Pure Appl. Chem. 51: 661–675.

    Google Scholar 

  • Liaaen-Jensen, S. & S. Hertzberg, 1966. Selective preparations of the lutein monomethyl ethers. Acta. Chem. Scanda. 20: 1703–1709.

    Google Scholar 

  • Liaaen-Jensen, S. & A. Jensen, 1971. Quantitative determination of carotenoids in photosynthetic tissues. In San Petro, A. (ed.) Methods in Enzymology. Vol. XXIII. Photosynthesis. Academic Press, N.Y.: 586–602.

    Google Scholar 

  • Louda, J. W., J. Li, L. Liu, M. N. Winfree & E. W. Baker, 1998. Chlorophyll a degradation during cellular senescence and death. Org. Geochem. 29: 1233–1251.

    Article  Google Scholar 

  • Mantoura, R. F. C. & C. A. Llewellyn, 1983. The rapid determination of algal chlorophyll and carotenoid pigments and their breakdown products in natural waters by reversed-phase high-performance liquid chromatography. Anal. Chim. Acta 151: 297–314.

    Article  Google Scholar 

  • Mantoura, R. F. C. & D. J. Repeta, 1997. Calibration methods for HPLC. In Jeffrey, S. W., R. F. C. Mantoura & S. W. Wright (eds.) Phytoplankton Pigments in Oceanography. UNESCO Publishing, Paris: 383–406.

    Google Scholar 

  • Mantoura, R. F. C., S. W. Wright, S. W. Jeffrey, R. G. Barlow & D. E. Cummings, 1997a. Filtration and storage of pigments from microalgae. In Jeffrey, S. W., R. F. C. Mantoura & S. W. Wright (eds.) Phytoplankton Pigments in Oceanography. UNESCO Publishing, Paris: 283–305.

    Google Scholar 

  • Mantoura, R. F. C., S. W. Jeffrey, C. A. Llewelln, H. Claustre & C. E. Morales, 1997. Comparison between spectrophotometric, fluorometric and HPLC methods for chlorophyll analysis. In Jeffrey, S. W., R. F. C. Mantoura & S. W. Wright (eds.) Phytoplankton Pigments in Oceanography. UNESCO Publishing, Paris: 361–380.

    Google Scholar 

  • McElroy-Etheridge, S. L. & G. B. McManus, 1999. Food type and concentration affect chlorophyll and carotenoid destruction during copepod feeding. Limnol. Oceanogr. 44: 2005–2011.

    Google Scholar 

  • Millie, D. F., H. W. Pearl & J. P. Hurley, 1993. Microalgal pigment assessments using high-performance liquid chromatography: a Synopsis of organismal and ecological applications. Can. J. Fish. Aquat. Sci. 50: 2513–2527.

    Article  Google Scholar 

  • Moss, G. P. & B. C. L. Weedon, 1976. Chemistry of carotenoids. In Goodwin, T. W. (ed.) Chemistry and Biochemistry of Plant Pigments. Academic Press, N.Y.: 149–224.

    Google Scholar 

  • Mukaida, N. & Y. Nishikawa, 1990. Chromatographic separation of protochlorophylls and their structural analysis by fast atom bombardment mass spectrometry. Nippon Kagaku Kaishi 11: 1244–1249.

    Google Scholar 

  • Murphy, M. T. J., A. McCormick & G. Eglington, 1967. Perhydro-β-carotene in Green River Shale. Science 157: 1040–1042.

    Google Scholar 

  • Naylor, C. C. & B. J. Keely, 1998. Sedimentary purpurins: Oxidative transformation products of chlorophylls. Org. Geochem. 28: 417–422.

    Article  Google Scholar 

  • Ostrovsky, I. & Y. Z. Yacobi, 1999. Organic matter and pigments in surface sediments: Possible mechanisms of their horizontal distributions in a stratified lake. Can. J. Fish. Aquat. Sci. 56: 1001–1010.

    Article  Google Scholar 

  • Overmann, J., G. Sandmann, K. J. Hall & T. G. Northcote, 1993. Fossil carotenoids and paleolimnology of meromictic Mahoney Lake, British Columbia, Canada. Aquat. Sci. 55: 31–39.

    Article  Google Scholar 

  • Pfander, H. & R. Riesen, 1995. High-performance liquid chromatography. In Briton, G., S. Liaaen-Jensen & H. Pfander (eds.) Carotenoids. Vol. 1A. Isolation and Analyis. Birkhäuser, Boston: 145–190.

    Google Scholar 

  • Poister, D., D. E. Armstrong & J. P. Hurley, 1999. Influences of grazing on temporal patterns of algal pigments in suspended and sedimenting algae in a north temperate lake. Can. J. Fish. Aquat. Sci. 56: 60–69.

    Article  Google Scholar 

  • Repeta, D. J. & T. Bjørnland, 1997. Preparation of carotenoid standards. In Jeffrey, S. W., R. F. C. Mantoura & S. W. Wright (eds.) Phytoplankton Pigments in Oceanography. UNESCO Publishing, Paris: 239–260.

    Google Scholar 

  • Sanger, J. E., 1988. Fossil pigments in paleoecology and paleolimnology. Palaeogeog. Palaeoclim. Palaeoecol. 62: 343–359.

    Article  Google Scholar 

  • Sanger, J. E. & G. H. Crowl, 1979. Fossil pigments as a guide to the postglacial history of Kircchner Marsh, Minnesota. Limnol. Oceanogr. 17: 840–854.

    Google Scholar 

  • Sanger, J. E. & E. Gorham, 1970. The diversity of pigments in lake sediments and it’s ecological significance. Limnol. Oceanog. 15: 59–69.

    Google Scholar 

  • Schiedt, K., 1995. Thin layer chromatography. In Briton, G., S. Liaaen-Jensen & H. Pfander (eds.) Carotenoids. Vol. 1A. Isolation and Analyis. Birkhäuser, Boston: 131–144.

    Google Scholar 

  • Schiedt, K. & S. Liaaen-Jensen, 1995. Isolation and analysis. In Briton, G., S. Liaaen-Jensen & H. Pfander (eds.) Carotenoids. Vol. 1A. Isolation and Analyis. Birkhäuser, Boston: 81–108.

    Google Scholar 

  • Scheer, H., 1991. Chlorophylls. CRC Press, Boston, 950 pp.

    Google Scholar 

  • Šesták, Z., 1980. Paper chromatography of chloroplast pigments (chlorophylls and carotenoids)—Part 3. Photosynthetica 14: 239–270.

    Google Scholar 

  • Steenbergen, C. L. M., H. J. Korthals & E. G. Dobrynin, 1994. Algal and bacterial pigments in non-laminated lacustrine sediment: Studies of their sedimentation, degradation and stratigraphy. FEMS Microbiol. Ecol. 13: 335–352.

    Google Scholar 

  • Steinman, A. D., K. E. Havens, J. W. Louda, N. M. Winfree & E. W. Baker, 1998. Characterization of the photoautotrophic algal and bacterial communities in a large, shallow, subtropical lake using HPLC-PDA based pigment analysis. Can. J. Fish. Aquat. Sci. 55: 206–219.

    Article  Google Scholar 

  • Swain, E. B., 1985. Measurement and interpretation of sedimentary pigments. Freshwat. Biol. 15: 53–75.

    Google Scholar 

  • Tett, P., 1982. The Loch Eil project: Planktonic pigments in sediments from Loch Eil and the Firth of Lorne. J. Exp. Mar. Biol. Ecol. 56: 111–114.

    Google Scholar 

  • Vallentyne, J. R., 1954. Biochemical limnology. Science 119: 605–606.

    Google Scholar 

  • Vallentyne, J. R., 1956. Epiphasic carotenoids in postglacial lake sediments. Limnol. Oceanogr. 1: 252–262.

    Article  Google Scholar 

  • Vallentyne, J. R., 1957. Carotenoids in 20,000-year old sediment from Searles Lake. California. Arch. Biochem. Biophys. 70: 29–34.

    Article  Google Scholar 

  • van Breemen, R. B., F. L. Conjura & S. J. Schwartz, 1991. High performance liquid chromatography-continuous-flow fast atom bombardment mass spectrometry of chlorophyll derivatives. J. Chromatogr. 542: 373–383.

    Google Scholar 

  • van Breemen, R. B., H. H. Schmitz & S. J. Schwartz, 1993. Continuous flow fast atom bombardment liquid chromatography/mass spectrometry of carotenoids. Anal. Chem. 65(8): 965–969.

    Google Scholar 

  • van Breemen, R. B., H. H. Schmitz & S. J. Schwartz, 1995. Fast atom bombardment mass spectrometry of carotenoids. J. Agric. Food Chem. 42(2): 384–389.

    Google Scholar 

  • van Breemen, R. B., 1996. Innovations in carotenoid analysis. Anal. Chem. 68: 299A–304A.

    Google Scholar 

  • Vetter, M. & W. Meister, 1985. Fast atom bombardment mass spectrum of β-carotene. Org. Mass Spectrom. 20: 266–267.

    Article  Google Scholar 

  • Villanueva, J., J. O. Grimalt, R. Dewit, B. J. Keely & J. R. Maxwell, 1993. Sources and transformations of chlorophylls and carotenoids in a monomictic sulphate-rich karstic lake environment. Adv. Org. Geochem. 22: 739–757.

    Google Scholar 

  • Villanueva, J., J. O. Grimalt, R. Dewit, B. J. Keely & J. R. Maxwell, 1994. Chlorophyll and carotenoid-pigments in solar saltern microbial mats. Geochim. Cosmochim. Acta 58: 4703–4715.

    Article  Google Scholar 

  • Vogel, A., 1978. Textbook of Practical Organic Chemistry. 4th Edition. Longman, N.Y., 1368 pp.

    Google Scholar 

  • Watts, D. C. & J. R. Maxwell, 1977. Carotenoid diagenesis in a marine sediment. Geochim. Cosmochim. Acta 41: 493–497.

    Google Scholar 

  • Winfree, N. M., J. W. Louda, E. W. Baker, A. D. Steinman & K. E. Havens, 1997. Application of chlorophyll and carotenoid pigments for the chemotaxonomic assessment of seston, periphyton, and cyanobacterial mats of Lake Okeechobee. Florida. Molec. Mark. Environ. Geochem. 671: 77–91.

    Google Scholar 

  • Wright, S. W., S. W. Jeffrey, R. F. C. Mantoura, C. A. Llewellyn, T. Bjørnland, D. Repeta & N. A. Welschmeyer, 1991. Improved HPLC method for analysis of chlorophylls and carotenoids from marine phytoplankton. Mar. Prog. Ecol. Ser. 77: 183–196.

    Google Scholar 

  • Wright, S. W. & S. W. Jeffrey, 1997. High resolution HPLC system for chlorophylls and carotenoids of marine phytoplankton. In Jeffrey, S. W., R. F. C. Mantoura & S. W. Wright (eds.) Phytoplankton Pigments in Oceanography. UNESCO Publishing, Paris: 327–341.

    Google Scholar 

  • Wright, S. W. & R. F. C. Mantoura, 1997. Guidelines for setting up an HPLC system and laboratory. In Jeffrey, S. W., R. F. C. Mantoura & S. W. Wright (eds.) Phytoplankton Pigments in Oceanography. UNESCO Publishing, Paris: 383–406.

    Google Scholar 

  • Wright, S. W. & J. D. Shearer, 1984. Rapid extraction and high-performance liquid chromatography of chlorophylls and carotenoids from marine phytoplankton. J. Chromatogr. 294: 281–295.

    Article  Google Scholar 

  • Wright, S. W., S. W. Jeffrey & R. F. C. Mantoura, 1997. Evaluation of methods and solvents for pigment extraction. In Jeffrey, S. W., R. F. C. Mantoura & S. W. Wright (eds.) Phytoplankton Pigments in Oceanography. UNESCO Publishing, Paris: 261–282.

    Google Scholar 

  • Yacobi, Y. Z., W. Eckert, H. G. Trüper & T. Berman, 1990. High Performance Liquid Chromatography detection of phototrophic bacterial pigments in aquatic environments. Microb. Ecol., 19: 127–136.

    Article  Google Scholar 

  • Yacobi, Y. Z., R. F. C. Mantoura & C. A. Llewellyn, 1991. The distribution of chlorophylls and carotenoids and their breakdown products in Lake Kineret (Israel) sediments. Freshwat. Biol. 26: 1–10.

    Google Scholar 

  • Young, A. & G. Britton, 1993. Carotenoids in Photosynthesis. Chapman and Hall, London, 498 pp.

    Google Scholar 

  • Zechmeister, L., 1962. Cis-trans isomeric carotenoids, vitamin A and aryl polyenes. Academic Press, N.Y.

    Google Scholar 

  • Züllig, H., 1981. On the use of carotenoid stratigraphy in lake sediments for detecting past developments of phytoplankton. Limnol. Oceanogr. 26: 970–976.

    Google Scholar 

  • Züllig, H., 1982. Untersuchungen über die Stratigraphie von Carotinoiden im geschichteten Sediment von 10 Schweizer Seen zur Erkundung früherer Phytoplankton-Entfaltungen. Schweiz. Z. Hydrol. 44: 1–98.

    Google Scholar 

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Leavitt, P.R., Hodgson, D.A. (2002). Sedimentary Pigments. In: Smol, J.P., Birks, H.J.B., Last, W.M., Bradley, R.S., Alverson, K. (eds) Tracking Environmental Change Using Lake Sediments. Developments in Paleoenvironmental Research, vol 3. Springer, Dordrecht. https://doi.org/10.1007/0-306-47668-1_15

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