Abstract
Nanobiotechnology is a novel field where bio-molecules are assembled on devices for exploitation in bio-analytical applications. The increased understanding of the structure-function relationship of redox proteins and enzymes combined with the progress made in protein engineering, molecular spectroscopy and structural biology allows today the possibility of creating genetically engineered proteins/enzymes to be used in arrays for high-through-put screening.
This paper reports on the use of small and well characterised electron transfer proteins/enzymes, suchasflavodoxin, cytochrome c 553 and cytochrome P450 as modules to design and construct covalently linked, artificial electron transfer chains. Functional characterisation of these molecular wires will increase our understanding on the structure-function relationships in electron transfer systems. This approach has been named “molecular lego”, and its application to cytochromes P450, an important class of enzymes responsible for the metabolism of a large number of drugs and xenobiotics, is particularly relevant to biotechnology.An efficient,artificialelectron transfer chain was obtained by fusing the flavodoxin from D. vulgaris and the soluble haem domain of cytochrome P450 from B. megaterium. Moving to a higher level of complexity, the scaffold of this soluble enzyme was also used to insert the key structural and functional elements of the human cytochrome P450 2E1. The chimeric protein containing the fused bacterial and human domains was successfully engineered. Finally, a method designed to identify active P450 mutants to be used for the assembly of arrays with different activity/specificity is presented.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Page, C. C., Moser, C. C., Chen, X., and Dutton, P. L. (1999) Natural engineering principles of electron tunnelling in biological oxidation-reduction. Nature, 402, 47–51.
.Beratan, D. N., and Onuchic, J. N. (1996) The protein bridge between redox centres in Protein electron transfer (Bendall, D. S., ed), pp. 23–42, BIOS scientific publishers Ltd., Oxford.
Canters, G. W., and Van de Kamp, M. (1992) Protein-mediated electron transfer. Curr. Opin. Struc. Bioi., 2, 859–869.
Hill, H. A. 0. (1996) The development of bioelectrochemistry. Coord. Chem. Rev., 151, 115–123.
Willner, I., Katz, E., and Willner, B. (1997) Electrical contact ofredox enzyme layers associated with electrodes: routes to amperometric biosensors. Electroanalysis, 9(13), 965–977.
Anne. A,, Blanc, B., Moiroux, J., and Saveant, J. M. (1998) Facile derivatisation of glassy carbon surfaces by N-hydroxysuccinimide esters in view of attaching biomolecules. Langmuir, 14(9), 2368–2371.
Heering, H. A,, Hirst, J., and Armstrong, F. A. (1998) Interpreting the catalytic voltammetry of electroactive enzymes adsorbed on electrodes. J. Phys. Gem. B, 102(35), 6889–6902.
Poulos, T. L. (1995) Cytochrome P450. Curr. Upin. Struct. Bioi., 5,767–774.
Kellner, D. G., Maves, S. A,, and Sligar, S. G. (1997) Engineering cytochrome P450s for bioremediation. Curr. Upin. Biotech., 8(3), 274–278.
DiGleria, K., Nickerson, D. P., Hill, H. A. O., Woiig, L. L., and Fulop, V. (1998) Covalent attachment of an electroactive sulfhydryl reagent in the active site of cytochrome P450(cam) as revealed by the crystal structure of the modified protein. J. Am. Chem Soc., 120(1), 46–52.
Kurz, A,, Halliwell, C. M., Davis, J. J., Hill, H. A. O., and Canters, G. W. (1998) A fulleréne-modified protein. J. Chem. Soc., Chem. Commun., 1,433–434.
Willner, I., Heleng-Shabtai, V., Katz, E., Rau, H. K., and Haehnel, W. (1999) Integration of a reconstituted de Novo synthesised haemoprotein and native metalloproteins with electrode supports for bioelectronic and bioelectrocatalytic applications. J. Am. Chem Soc., 121, 6455–6468.
Arnold, F. H., Volkov, A.A. (1999) Directed evolution of biocatalysts. Curr. Opin. Chem. Biol, 3, 54–59.
Minshull, J., Stemmer, W.P.C. (1999) Protein evolution by molecular breeding. Curr. Upin. Chem. Biol., 3,284–290.
Bendall, D. S. (1996) Protein Electron Transfer (Bendall, D. S., Ed.), BIOS Scientific Publishers Ltd., Oxford, England.
Davidson, V. L. (1996) Unravelling the kinetic complexity of inter-protein electron transfer reactions. Biochemistry, 35(45), 14035–14039.
Koppenol, W. H., and Margoliash, E. (1982) The asymmetric distribution of charges on the surface of horse cytochrome c. J. Bioi. Chem., 257,4426–4437.
Margoliash, E., and Bossard, H. R. (1983) Guided by electrostatics, a textbook protein comes of age. Trends Biochem. Sci., 8,316–320.
Roberts, V. A,, Freeman, H. C., Olson, A. J., Tainer, J. A,, and Getzoff, E. D. (1991) Electrostatic orientation of the electron-transfer complex between plastocyanin and cytochrome c. J. Bioi. Chem., 266, 13431–13441.
Marcus, R. A,, and Sutin, N. (1985) Electron transfers in chemistry and biology. Biochim. Biophys. Acta, 811,265–322.
Hoffman, B. M., and Ratner, M. A. (1987) Gated electron transfer: when are observed rates controlled by conformational interconversion. J. Am. Chem. Soc., 109,6237–6243
Nocek, J. M., Stemp, E. D. A,, Finnegan, M. G., Koshy, T. I., Johnson, M. K., Margoliash; E., Mauk, A. G., Smith, M., and Hoffman, B. M. (1991) Low-temperature, cooperative conformational transition within Zn-cytochrome-c peroxidase, cytochrome-c. complexes-variation with cytochrome. J. Am. Chem. Soc., 113,6822–6831.
Feitelson, J., and McLendon, G. (1991) Migration of small molecules through the structure of haemoglobin: Evidence for gating in a protein electron-transfer reaction. Biochem., 30, 5051–5055.
Ivkovic-Jensen, M. M., Ullmann, G. M., Young, S., Hansson, O., Crnogorac, M. M., Ejdeback, M., and Kostic, N. (1998) Effects of single and double mutatins in plastocyanin on the rate constant and activation parameters for the rearrangement gating the electron-transfer reaction between the triplet state of zinc cytochrome c and cupriplastocyanin. Biochem., 37,9557–9569.
Walker, M. C., and Tollin, G. (1992) Laser flash photolysis study of the kinetics of electron transfer reactions of flavocytochrome b2 from Hansenula anomala: Further evidence for intramolecular electron transfer mediated by ligand binding. Biochem., 31,2798–2805.
Sullivan, E. P. J., Hazzard, T. J., Tollin, G., and Enemark, J. H. (1992) Inhibition of intramolecular electron transfer in sulphite oxidase by anion binding. J, Am. Chem. Soc., 114,9662–9663.
Adir, N., Axelrod, H. L., Beroza, P., Isaacson. R. A,. Rongey, S. H., Okamura, M. Y., and Feher, G. (1996) Co-crystallisation and characterisation of the photosynthetic reaction centre-cytochrome c(2) complex from Rhodobacter sphaeroides. Biochem.. 35(8), 2535–2547.
Pelletier, H., and Kraut, J. (1992) Crystal structure of a complex between electron transfer partners, cytochrome c peroxidase and cytochrome c. Science. 258, 1748–1755.
Chen, L., Durley, R. C. E., Mathews, F. S., and Davidson, V. L. (1994) Structure of an electron transfer complex: methylamine dehydrogenase, amicyanin, and cytochrome c-555i. Science, 264, 86–90.
Ubbink, M., Ejdeback, M., Karlsson, B. G., and Bendall. D. S. (1998) The structure of the complex of plastocyanin and cytochrome f, determined by paramagnetic NMR and restrained rigid-body molecular dynamics. Structure, 6(3), 323–335.
Moser, C. C., and Dutton, P. L. (1988) Cytochrome c and c2binding dynamics and electron transfer with photosynthetic reaction centre protein and other integral membrane redox proteins. Biochem., 27, 2450–2461
Zhou, J. S., and Hoffman, B. M. (1994) Stern-volmer in reverse: 211 stoichiometry of the cytochrome c-cytochrome c peroxidase electron transfer complex. Science, 265, 1693–1696.
Peerey, L. M., Brothers, H. M., Hazzard, J. T., Tollin, G., and Kostic, N. M. (1991) Unimolecular and bimolecular oxidoreduction reactions involving diprotein complexes of cytochrome c and plastocyanin. Dependence of electron-transfer reactivity on charge and orientation of the docked metalloproteins. Biochem., 30,9297–9304.
Weber, P. C., and Tollin, G. (1985) Electrostatic interactions during electron transfer reactions between C-type cytochromes and flavodoxin. J Biol Chem.: 260, 5568–5573.
Stewart, D. E., LeGall, J., Moura, I., Moura, J. J. G., Peck, H. D. J., Xavier, A. V., Weiner, P. K., and Wampler, J. E. (1988) A hypothetical model of the flavodoxin tetrahaeme cytochrome-C3 complex of sulphate-reducing bacteria. Biochem. 27,2444–2450.
Poulos, T. L., and Mauk, A. G. (1983) Models for the complexes formed between cytochrome b5 and the subunits of methaemoglobin. J Biol. Chem., 258, 7369–7373.
Stayton, P. S., Poulos, T. L., and Sligar, S. G. (1989) Putidaredoxin competitively inhibits cytochrome b5-cytochrome P-450cam electron-transfer complex. Biochem. 28, 8201–8205.
Geren, L., Tuls, J., O’Brien, P., Millett, F.. and Peterson, J. A. (1986) The involvement of carboxylate groups of putidaredoxin in the reaction with putidaredoxin reductase. J. Biol. Chem., 261, 15491–15495.
Roitberg, A. E., Holden, M. J., Mayhew, M. P., Kurnikov, I. V., Beratan, D. N., and Vilker, V. L. (1998) Binding and electron transfer between putidaredoxin and cytochrome P45Ocam. Theory and experiments. J. Am. Chem. Soc., 120,8927–8932.
Tegoni, M., White, S. A., Roussel, A., Mathews, F. S., and Cambillau, C. (1993) A hypothetical complex between crystalline flavocytochrome b2 and cytochrome c. Proteins: Struct. Funct. Genet., 16,408–422.
Cunha, C. A., Romao, M. J., Sadeghi, S. J., Valetti, F., Gilardi, G., and Soares, C. M. (1999) Effects of protein-protein interactions on electron transfer: docking and electron transfer calculations for complexes between flavodoxin and C-type cytochromes. J. Biol. Inorg. Chem., 4, 360–374.
Ruckpaul, K., Rein, H, and Blanck, J. (1989) Regulation mechanisms of the activity of the hepatic endoplasmic cytochrome P-450 in Basis and mechanisms of regulation of cytochrome P-450 (Ruckpaul, K., Rein, H., ed) Vol. 1, pp. 6–29, Taylor and Francis.
Guengerich, F. P. (1990) Enzymatic oxidation of xenobiotic chemicals. Crit. Rev. Biochem. Mol. Biol., 25(2), 97–153.
Halkier, B. A. (1996) Catalytic reactivities and structure/function relationships of cytochrome P450 enzymes. Phytochemistry, 43(1), 1–21.
Poulos, T. L., Finzel, B.C., and Howard, A.J. (1987) High-resolution crystal structure of cytochrome P450cam. J. Mol. Biol., 195,687–700.
Ravichandran, K. G., Boddupalli, S.S., Hasemann, C.A., Peterson, J.A., and Deisenhofer, J. (1993) Crystal structure of haemoprotein domain of P450BM-3, a prototype for microsomal P450s. Science, 261, 731–736.
Cupp-Vickery, J. R., and Poulos, T.L. (1995) Structure of cytochrome P450eryf involved in erythromycin biosynthesis. Nat. Struct. Biol., 2, 144–153.
Hasemann, C. A,, Ravichandran, K.G., Peterson, J.A., and Deisenfofer, J. (1994) Crystal structure and refinement of cytochrome P450terp at 2.3 Å resolution. J. Mol. Biol., 236, 1169–1185.
Park, S. Y., Shimizu, H., Adachi, S., Nakagawa, A,, Tanaka, l., Nakahara, K., Shoun, H., Obayashi, E., Nakamura, H., Iizuka, T., and Shiro, Y. (1997) Crystal structure of nitric oxide reductase from denitrifying fungus Fusarium oxysporum. Nat. Struct. Biol., 4, 827–832.
Williams, P. A., Cosme, J., Sridhar, V., Johnson E.F., and McRee, D.E. (2000) Mammalian microsomal cytochrome P450 monooxygenase: Structural adaptations for membrane binding and functional diversity. Mol. Cell., 5, 121–131.
Graham, S. E., and Peterson, J.A. (1999) How similar are P450s and what can their differences teach us? Arch. Biochem. Biophys., 369(1), 24–29.
Estabrook, R. W., Hildebrandt, A.G., Remmer, H., Schenkman, J.B., Rosenthal, O., and Cooper, D.Y. (1968) Role of cytochrome P-450 in microsomal mixed function oxidation reactions in Biochemie des Sauerstoffs (Hess, B., Staudinger, H., ed), pp. 142–177, Springer-Verlag, Berlin.
White, R. E,, and Coon, M.J. (1980) Oxygen activation by cytochrome P-450. Annu. Rev. Biochem., 49,3 15–356.
Daff, S. N., Chapman, S.K., Turner, K.L., Holt, R.A., Govindaraj, S., Poulos, T.L., and Munro, A.W. (1997) Redox control of the catalytic cycle of flavocytochrome P-450 BM3. Biochemistry, 36, 13816–13823.
Wong, L.-L. (1998) Cytochrome P450 monooxygenases. Curr. Opin. Chem. Biol., 2, 263–268.
Guengerich, F. P., and Schimada, T. (1998) Activation of procarcinogens by human cytochrome P450 enzymes. Mutat. Res., 400, 201–213.
Capdevila, J. H., Falck, J.R., and Harris, R.C. (2000) Cytochrome P450 and archidonic acid bioactivation: molecular and functional properties of the arachidonate monooxygenase. J. Lipid Res., 41(2), 163–181.
Estabrook, R. W., Shet, M.S., Faulkner, K., and Fisher, C.W. (1996) The use of electrochemistry for the synthesis of 17 alpha-hydroxyprogesterone by a fusion protein containing P450c17. Endocr. Res., 22(4), 665–671.
Hamman, M. A,, Thompson, G.A., and Hall, S.D. (1997) Regioselective and stereoselective metabolism of ibuprofen by human cytochrome P450 2C. Biochem. Pharmac., 54(1), 33–41.
Narhi, L. O., and Fulco, A.J. (1986) Characterisation of a catalytically self-sufficient 119,000-Dalton cytochrome P-450 monooxygenase induced by barbiturates in Bacillus megaterium. J. Biol.Chem., 261,7160–7169.
Boddupalli, S. S., Estabrook, W., and Peterson, J.A. (1990) Fatty acid monooxygenation by cytochrome P-450BM3. J. Biol. Chem.: 265,4233–4239.
Nakayama, N., Takemae, A,, and Shoun, H. (1996) Cytochrome P45Ofoxy, a catalytically self-sufficient fatty acid hydroxylase of the fungus Fusarium oxysporum. J. Biochem., 119, 435–440.
Fruetel, J. A., Mackman, R.L., Peterson, J.A., and de Montellano, P.R.O. (1994) Relationship of active site topology to substrate specificity for cytochrome P45Oterp (CYPlO8). J. Biol. Chem., 46, 28815–28821
Alworth, W. L., Xia, Q. W., and Liu, H. M. (1997) Organochlorine substrates and inhibitors of P450 BM-3. FASEB J., 11, SS, P190.
Coon, M. J., McGinnity, D.F., Vaz, A.D.N, Liu. H.M., Mullin, D.A., Sato, H., and Shimizu, T. (1997) Novel substrates for mechanistic studies with cytochrome P450 BM3. FASEB J., 11, SS, 3326.
Darwish, K., Li, H., and Poulos, T.L. (1991) Engineering proteins, subcloning and hyperexpressing oxidoreductase genes. Prot. Engng., 4,701–708.
Lewis, D. F. V. (1995) 3-Dimensional models of’ human and other mammalian microsomal P45Os constructed from an alignment with P450 102 (P450(BM3)). Xenobiotica, 25(4), 333–366.
Chang, Y. T., Stiffelman, O.B., Vakser, I.A., Loew, G.H., Bridges, A,, and Waskell, L. (1997) Construction of a 3D model of cytochrome P450 294. Prot. Engng., 10, 119–129.
Dubois, M., Plaisance, H., Thome, J.P., and Kremers. P. (1996) Hierarchical cluster analysis of environmental pollutants through P450 induction in cultured hepatic cells— Indications for a toxicity screening test. Ecotoxicol. Environm. Safety, 34(3), 205–215.
Harayama, S. (1997) Polycyclic aromatic hydrocarbon bioremediation design. Curr. Opin. Biotech., 8, 268–273.
Alworth, W. L., Mullin, D.A., Xia, Q., Kang, L., Liu, H.-M, and Zhao, W. (1995) A site specific mutant of the bacterial cytochrome-P450-l02(BM-3) possessing a new capability to catalyse the hydroxylation of the polycyclic aromatic hydrocarbons pyrene and benzoapyrene. FASEB J, 9, A1491.
Logan, M. S., Newman, L.M., Schanke, C.A.. and Wackett, L.P. (1993) Cosubstrate effects in reductive dehalogenation by Pseudomonas putida G786 expressing cytochrome P450cam. Biodegradation,4,39–50.
Uotila, J. S., Kitunen, V.H., Saastamoinen, T., Coote, T.: Haggblom, M.M., and Salkinoja-Salonen, M.S. (1992) Characterisation of aromatic dehalogenases of Mycobacterium fortuitum CG-2. J. BacterioL, 174, 5669–5675.
Jones, J. P., O’Hare, E.J.: and Wong, L.-L. (2000) The oxidation of polychlorinated benzenes by genetically engineered cytochrome P450cam: potential applications in biorernediation. Chem. Commun.,3,247–248.
Wackett, L. P. (1995) Recruitment of co-metabolic enzymes for environmental detoxification of organohalides. Environ. Health Perspect., 103,45–48.
WerckReichhart, D., Hehn, A., and Didierjean. L. (2000) Cytochromes P450 for engineering herbicide tolerance.Trends Plants Sci.,5(3),116–123.
Erhardt, P. W. (1999) Drug metabolism-Databases and high-throughput testing during drug design and development, Published for International Union of Pure and Applied Chemistry by Blackwell Science Ltd, London.
Guengerich, F. P. (1999) Cytochrome P450: regulation and role in drug metabolism. Annu. Rev. Pharmacol. Toxicol., 39, 1–17.
Li, A. P. (1998) The scientific basis of drug-drug interactions: mechanism and pre-clinical evaluation. Drug Info. J., 32, 657–664.
Crespi, C. L., and Miller, V.P. (1999) The use of heterologously expressed drug metabolising enzymes-state of the art and prospects for the future. Pharmacol ther., 84, 121–131.
Rendic, S., and DiCarlo, F.J. (1997) Human cytochrome P450 enzymes: a status report summarising their reactions, substrates, inducers and inhibitors. Drug. Metab. Rev., 29,413–580.
Spatzenegger, M., and Jaeger, W. (1995) Clinical importance of hepatic cytochrome P450 in drug metabolism. Drug Metab. Rev., 27,397–417.
Bertz, R. J., and Cranneman, G.R. (1997) Use of in vitro and in vivo data to estimate the likelihood of metabolic pharmacokinetic interactions. Clin. Pharmacokinet., 32(3), 210–258.
Gillam, E. M. J., Guo, Z., and Guengerich, F.P. (1994) Expression of modified human cytochrome P450 2E1 in Escherichia coli, purification, and spectral and catalytic properties. Arch. Biochem. Biophys., 319, 59–66.
Lieber, C. S. (1997) Cytochrome P-4502E1: Its physiological and pathological role. Physiol. Rev., 77(2), 517–538.
Le Marchand, L., Sivaraman, L., Pierce, L., Seifried, A,, Lum, A., Wikens, L.R., and Lau, A.F. (1998) Associations of CYP1A1, GSTM1, and CYP2E1 polymorphisms with lung cancer suggest cell type specificities to tobacco carcinogens. Canc. Res., 58(21), 4858–4863.
Beskin, M. J. (1980) Effect of combined phenylbutazone and ethanol administration on rat liver. Exp. Pathol.,18,487–491.
Sibbesen, O., Devoss, J. J., and Ortiz De Montellano, P. R. (1996) Putidaredoxin reductase-putidaredoxin-cytochrome P450cam triple fusion protein. J. Biol. Chem., 271(37), 22462–22469.
Valetti, F., Sadeghi, S. J., Meharenna, Y. T., Leliveld, S. R., and Gilardi, G. (1988) Engineering multi-domain redox proteins containing flavodoxin as bio-transformer: preparatory studies by rational design. Biosens. Bioelectron., 13,675–685.
Lamb, D. C., Kelly, D. E., Hanley, S. Z., Mehmood, Z., and Kelly, S. L. (1998) Glyphosate is an inhibitor of plant cytochrome P450: Functional expression of Thlaspi arvensae cytochrome P450 71B/reductase fusion protein in Escherichia coli. Biochem. Biophys. Res. Com., 244, 110–114.
Schroder, G., Unterbusch, E., Kaltenbach, M., Schmidt, J., Strack, D., Luca, V. D., and Schroder, J. (1999) Light-induced cytochrome P450-dependent enzyme in indole alkaloid biosynthesis: tabersonine 16-hydroxylse.FEBS Lett., 458,97–102.
Shiota, N., Nagasawa, A,, Sakaki, T., Yabusaki, Y., and Ohkawa, H. (1994) Herbicide-Resistant Tobacco Plants Expressing the Fused Enzyme between Rat Cytochrome P4501A1 (CYP1A1) and Yeast NADPH-Cytochrome P450 Oxidoreductase. Plant Physiol., 106, 17–23.
Lacour, T., and Ohkawa, H. (1999) Engineering and biochemical characterisation of the rat microsomal cytochrome P4501Al fused to ferredoxin and ferredoxin-NADP+ reductase from plant chloroplasts. Biochem. Biophys. Acta, 1433,87–102.
Friedberg, T. (2000) Recombinant in vitro tools to predict drug metabolism and safety. PSn, 3(3), 99–105.
Harlow, G. R., and Halpert, J. R. (1996) Mutagenesis study of Asp-290 in cytochrome p450 2B11 using a fusion protein with rat NADPH-cytochrome p450 reductase. Arch. Biochem. Biophys., 326(1), 85–92.
Schet, M. S., Fisher, C. W., Holmans, P. L., and Estabrook, R. W. (1993) Human cytochrome P450 3A4: Enzymatic properties of a purified recombinant fusion protein containing NADPH-P450 reductase. Proc. Natl. Acad. Sci. USA, 90,11748–11752.
Fisher, C. W., Schet, M. S., Caule, D. L., Martin-Wintrom, C. A,, and Estabrook, R. W. (1992) High-level expression in Escherichia coli of enzymatically active fusion proteins containing the domains of mammalian cytochromes P450 and NADPH-P450 reductase flavoprotein. Proc. Natl. Acad Sci. USA, 89, 10817–10821
Parikh, A., and Guengerich, F. P. (1996) Expression, purification and characterisation of a catalytically active human cytochrome P450 1A2:Rat NADPH-Cytochrome P450 reductase fusion protein. Prot. Exp. Purif., 9,346–354.
Estabrook, R. W., Faulkner, K. M., Shet, M. S., and Fisher, C. W. (1996) Application of Electrochemistry for P450-catalysed reactions. Methods in Enzymology, 272,44–51.
Eddowes, M. J., and Hill, H. A. 0. (1977) A novel method for the investigation of the electrochemistry of metallo proteins: cytochrome c. J. Chem. Soc. Chem. Commun., 3154.
Scouten, W. H., Luong, J. H. T., and Brown, R. S. (1995) Enzyme or protein immobilisation techniques for applications in biosensor design. TIBTECH, 113, 78–184.
Clark, L. C., and Lyons, C. (1962) Electrode systems for continuous monitoring in cardiovascular surgery. Ann. N. Y. Acad. Sci., 102,29.
Cass, A. E. G., Davis, G., Francis, G. D., Hill, H. A. O., Aston, W. J., Higgins, I. J., Plotkin, E. V., Scott, L. D. L., and Turner, A. P. F. (1984) Ferrocene-mediated enzyme electrode for amperometric determination of glucose. Anal. Chem., 56,667.
Cass, A. E. G., Davis, G., Green, M. J., and Hill, H. A. 0. (1985) Ferricinium ion as an electron— acceptor for oxydo-reductases. J. Electroanal. Chem., 190,117.
Bourdillon, C., Demaille, C., Moiroux, J., and Saveant, J.-M. (1993) New insights into the enzymatic catalysis of the oxidation of glucose by native and recombinant glucose-oxidase mediated by electrochemically generated one-electron redox cosubstrates. J. Am. Chem. Soc., 115,2.
Mor, J. R., and Guamaccia, R. (1977) Assay of glucose using an electrochemical enzymatic sensor. Anal. Biochem., 79,319.
Montagne, M., and Marty, J.-L. (1995) Bioenzyme amperometric D-lactate sensor using macromolecular NAD(+). Anal. Chim. Acta, 315,297.
Hill, H. A. O., and Higgins, I. J. (1981) Oxygen, oxidases, and the essential trace-metals. Philos. Trans. R. Soc. London, 302,267.
Janda, P., and Weber, J. (1991) Quinone-mediated glucose-oxidase electrode with the enzyme immobilised in polypyrrole. J. Electroanal. Chem., 300, 119.
Foulds, N. C., and Lowe, C. R. (1986) Enzyme entrapment in electrically conducting polymers —immobilisation of glucose-oxidase in polypyrrole and its application in amperometric glucose sensors. J. Chem. Soc. Faraday Trans. I, 82, 1259.
Hintz, M. J., and Peterson, J. A. (1980) The kinetics of reduction of cytochrome P-450cam by the dithionite anion monomer. J Biol. Chem., 255,7317–7325.
Contzen, J., and Jung, C. (1999) Changes in secondary structure and salt links of cytochrome P-450cam induced by photoreduction: A Fourier transform infrared spectroscopic study. Biochem., 38, 16253–16260.
Kazlauskaite, J., Westlake, A. C. G., Wong, L.-L., and Hill, H. A. 0. (1996) Direct electrochemistry of cytochrome P45Ocam. J. Chem. Soc., Chem. Commun.,255,2189–2190.
Zhang, Z., Nassar, A,-E. F., Lu, Z., Schenkman, J. B., and Rusling, J. F. (1997) Direct electron injection from electrodes to cytochrome P450cam in biomembrane-like films. J. Chem. Soc., Faraday Trans., 93(9), 1769–1774.
Lo, K. K.-W., Wong, L.-L., and Hill, H. A. 0. (1999) Surface-modified mutants of cytochrome P450(cam): enzymatic properties and electrochemistry. FEBS Lett.,451,342–346.
Lvov, Y. M., Lu, Z., Schenkman, J, B., Zu, X., and Rustling, J. F. (1998) Direct electrochemistry of myoglobin and cytochrome P450(carn) in alternate layer-by-layer films with DNA and other polyions. J. Am. Chem. Soc., 120,4073–4080.
Lei, C., Wollenberger, U., Jung, C., and Scheller, F. W. (2000) Clay-bridged electron transfer between cytochrome P45Ocam and electrode. Biochem. Biophys. Res. Commun., 268,740–744.
Dryhurst, G., Kadish, K. M., Scheller, F. W., and Renneberg, R. (1982) Biological electrochemistry, 1, Academic press, New York.
Scheller, F. W., Renneberg, R., Strnad, G., Pommerening, K., and Mohr, P. (1977), Bioelectrochem. Bioenerg., 4(500–507).
Sadeghi, S. J., Meharenna, Y. T., and Gilardi, G. (1999) Flavodoxin as module for transferring electrons to different c-type and P450 cytochromes in artificial redox chains in Flavins and Javoproteins (Ghisla, S., Kroneck, P., Marcheroux, P., and Sund, H., eds), pp. 163–166, R. Weber.
Sadeghi, S. J., Meharenna, Y. T., Fantuzzi, A,, Valetti, F., and Gilardi, G. (2000) Engineering artificial redox chains by molecular lego. J. Chem. Soc., Faraday Dis., 116, 135–153.
Watkins, J. A,, Cusanovich, M. A., Meyet, T. E., and Tollin, G. (1994) A “parallel plate” electrostatic model for bimolecular rate constants applied to electron transfer proteins. Protein Science, 3 (11), 2104–2114.
Sevrioukova, I. F., Hazzard, J. T., Tollin, G., and Poulos, T. L. (1999) The FMN to Heme Electron Transfer in Cytochrome P450BM-3. J. Biol. Chem., 274(51), 36097–36106.
Hazzard, J. T., Govindaraj, S., Poulos, T. L., and Tollin, G. (1997) Electron transfer between the FMN and haem domains of cytochrome P450BM-3. J. Biol. Chem., 272(12), 7922–7926.
Tsotsou, G. E., Meharenna, Y. T., Ganini, S., Fairhead, M. J., Sadeghi, S. J., and Gilardi, G. (2000) Molecular lego in generation of macromolecular assemblies of P450 enzymes for high throughput screening. submitted.
Heering, H. A,, and Hagen, W. R. (1996) Complex electrochemistry of flavodoxin at carbon-based electrodes: results from a combination of direct electron transfer, flavin-mediated electron transfer and comproportionation. J Electroanal. Chem., 404,249–260.
Ingelman-Sundberg, M., Oscarson, M, and McLellan, R.A. (1999) Polymorphic human cytochrome P450 enzymes: an opportunity for individualised drug treatment. Trends Pharmacol. Sci., 20,342–349.
Zhao, H., and Arnold, F.H. (1997) Combinatorial protein design: strategies for screening protein libraries. Curr. Opin. Struct. Biol., 7,480–485.
Burke, M. D., and Meyer, R.T. (1983) Differential effects of phenobartitone and 3-methylcholanthrene induction on the hepatic microsomal metabolism and cytochrome P-450-binding of phenoxazone and a homologous series of its 0-alkoxy ethers. Chem.-Biol. Interact., 45,243–258.
White, I. N. H. (1988) A continuous assay for cytochrome P-450-dependent mixed function oxidases using 3-cyano-7-ethoxycoumarin. Anal. Biochem., 172,304–310.
Rodrigues, A. D., Kukulka, M.J., Surber, B.W., Thomas, S.B., Uchic, J.T., Potert, G.A., Michael, G., Thome-Kromer, B., and Machinist, J.M. (1994) Measurement of liver-microsomal cytochrome-P450(CYP2D6) activity using o-methyl-14C:. dextromethorphan. Anal. Biochem., 219(2), 309–320.
Crespi, C. L., Miller, V.P., and Penman, B.W. (1997) Microtiter plate assays for inhibition of human, drug-metabolising cytochromes P450. Anal. Biochem., 248, 188–190.
Onderwater, R. C. A., Venhorst, J., Commandeur, J.N.M., and Vermeulen, N.P.E. (1999) Design, synthesis and characterisation of 7-methoxy-4-(aminomethyl)coumarin as a novel and selective P450 2D6 substrate suitable for high-throughput screening. Chem. Res. Toxicol., 12(7), 555–559.
VanBreemen, R. B., Nikolic, D., and Bolton, J.L. (1998) Metabolic screening using on-line ultrafiltration mass spectrometry. Drug Metab. Dispos., 26(2), 85–90.
Eddershaw, P. J., and Dickins, M. (1999) Advances in in vitro drug metabolism screening, Pharm. Sci. Technol. Today, 2(1), 13–19.
Yin, H., Racha, J., Li, S.Y., Olejnik, N., Satoh, H., and Moore, D. (2000) Automated high throughput human CYP isoform activity assay using SPE-LC/MS method: application in CYP inhibition evaluation. Xenobiotica, 30(2), 141–154.
Joo, H., Lin, Z.L., and Arnold, F.H. (1999) Laboratory evolution of a peroxide-mediated cytochrome P450 hydroxylation. Nature, 399(6737), 670–673.
Grigoryev, D. N., Kato, K., Njar, V.C.O., Long, B.J., Ling, Y.Z., Wang, X., Mohler, J., and Brodie, A.M.H. (1999) Cytochrome P45Ocl7-expressing Escherichia coli as a first-step screening system for 17a-hydroxylase-C17,20-lyase inhibitors. Anal. Biochem., 267,319–330.
Parikh, A., Josephy, D., and Guengerich, F.P. (1999) Selection and characterisation of human cytochrome P450 1A2 mutants with altered catalytic properties. Biochemistry, 38,5283–5289.
Maves, S. A,, Yeom, H., McLean, M.A., and Sligar, S.G. (1997) Decreased substrate affinity upon alteration of the substrate-docking region in cytochrome P450 BM-3. FEBSLett., 414,213–218.
Schwaneberg, U., Schmidt-Dannert, C., Schmitt, J., and Schmid, R.D. (1999) A continuous spectrophotometric assay for P450 BM-3, a fatty acid hydroxylating enzyme, and its mutant F87A. Anal. Biochem., 269,359–366.
Kaplan, N. O., Colowick, S.P., and Barnes, C.C. (1951) Effect of alkali on diphosphopyridine nucleotide. J. Biol. Chem., 191,461–472.
Lowry, 0. H., Roberts, N.R., and Kapphahn, J.I. (1957) The fluorometric measurement of pyridine nucleotides. J. Biol. Chem., 224, 1047–1064.
Childs, R. E., and Bardsley, W.G. (1975) The steady state kinetics of peroxidase with 2′2-Azino-di(3-ethyl-benzathiazoline-6-sulphonic acid) as chromagen. Biochem. J., 145,93–103.
Gasco, A,, Fruttero, R., and Sorba, G. (1996) NO-donors: An emerging class of compounds in medicinal chemistry. Farmaco, 51(10), 617–635.
Wang, M. H., Wade, D., Chen, L., White, S., and Yang, C. S. (1995) Probing the Active Site of Rat and Human Cytochrome P450 2E1 with Alcohols and Carboxylic Acids. Arch. Biochem Biophys., 317, 299–304.
Li, H., and Poulos, T.L. (1997) The structure of the cytochrome P450 BM-3 haem domain complexed with the fatty acid substrate, palmitoleic acid. Nat. Struct. Biol, 4, 140–146.
Chang, Y. T., Stiffelman, O.B., Vakser, LA., Loew, G.H., Bridges A,, and Waskell, L. (1997) Construction of a 3D model of cytochrome P450 2B4. Prot. Engng., 10(2), 119–129.
Shimoji, M., Yin, H., Higgins, L. A., and Jones, J. P. (1998) Design of a novel P450: A functional Bacterial-Human Cytochrome P450 chimera. Biochem., 37,8848–8852.
Waterman, M. R. (1996) Cytochrome P450. Meth. Enzymol., 272(B).
Nelson, D. R., and Strobel, H.W. (1998) On the membrane topology of vertebrate cytochrome P-450 proteins. J. Biol. Chem., 263,6038–6050.
Jenkins, C. M., and Waterman, M.R. (1998) NADPH-flavodoxin reductase and flavodoxin from Escherichia coli as a soluble microsomal P450 reductase. Biochemistry, 37,6106–6113.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2001 Kluwer Academic Publishers
About this chapter
Cite this chapter
Sadeghi, S.J., Tsotsou, G.E., Fairhead, M., Meharenna, Y.T., Gilardi, G. (2001). Rational Design of P450 Enzymes for Biotechnology. In: De Cuyper, M., Bulte, J.W.M. (eds) Physics and Chemistry Basis of Biotechnology. Focus on Biotechnology, vol 7. Springer, Dordrecht. https://doi.org/10.1007/0-306-46891-3_3
Download citation
DOI: https://doi.org/10.1007/0-306-46891-3_3
Publisher Name: Springer, Dordrecht
Print ISBN: 978-0-7923-7091-8
Online ISBN: 978-0-306-46891-9
eBook Packages: Springer Book Archive