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0-1 Integer Programming Based on DNA Tetrahedral Probe

  • Jing Yang
  • Xinmu Yang
  • Zhixiang YinEmail author
  • Zhang Qiang
  • Jianzhong Cui
Conference paper
Part of the Communications in Computer and Information Science book series (CCIS, volume 986)

Abstract

It is difficult to find an effective algorithm for solving NP complete problems such as integer programming. The nanostructure constructed by DNA origami combines huge parallelism and massive storage capacity of DNA computing. In the calculation process, it can effectively avoid the number of experimental operations required by other DNA computing models. It greatly reduces the time consumption and the rate of misinterpretation, thus providing an effective way to efficiently solve integer programming. DNA tetrahedron is a nanostructure constructed by origami. It has stable structure, good toughness and compression resistance, simple production process, high yield, rich functional modification sites, good biocompatibility, but also resistance to a variety of specific or non-specific nuclease. Therefore it can reduce the misinterpretation rate of biochemical reactions using DNA tetrahedron and DNA single strand to construct probes, finding the true solution according to the constraint condition. And then it can improve the computational efficiency of the model.

Keywords

DNA tetrahedron 0-1 integer programming DNA origami DNA computing 

Notes

Acknowledgment

This project is supported by National Natural Science Foundation of China (No. 61702008, No. 61672001) and Anhui Natural Science Foundation (No. 1808085MF193).

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Copyright information

© Springer Nature Singapore Pte Ltd. 2019

Authors and Affiliations

  • Jing Yang
    • 1
  • Xinmu Yang
    • 1
  • Zhixiang Yin
    • 1
    Email author
  • Zhang Qiang
    • 1
    • 2
  • Jianzhong Cui
    • 1
  1. 1.School of Mathematics and Big DataAnhui University of Science and TechnologyHuainanChina
  2. 2.School of ComputerDalian University of TechnologyDalianChina

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