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An Insight of Biological Databases Used in Bioinformatics

  • Vaibhav D. Bhatt
  • Monika Patel
  • Chaitanya G. Joshi
Chapter

Abstract

Collections of life sciences information from scientific investigations, high-throughput experiment technology, available literature, and computational analysis are called biological databases. It contains information from research areas comprising genomics, microarray gene expression, proteomics, phylogenetics, metabolomics, gene function, structure, localization and similarities of biological sequences. In a nutshell, databases are libraries for storage and representation of biological data obtained from the scientific community which converts data into knowledge. Utmost biological databases are available from websites that categorize data which operators can browse through the data online. Due to the vast amount of data generated by high-throughput DNA sequencers in the investigation of genome, transcriptome, and exome sequences of various organisms in current times, the biological data has stored with an exponential rate. The availability of enormous amount of biological data (sequences as well as structural) has generated a need for managing, storing, and retrieving this huge data. This chapter reviews current knowledge of the different types of databases available with examples of their file formats.

Keywords

Biological sequences High-throughput DNA sequencers Transcriptome and exome sequences 

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Copyright information

© Springer Nature Singapore Pte Ltd. 2018

Authors and Affiliations

  • Vaibhav D. Bhatt
    • 1
  • Monika Patel
    • 2
  • Chaitanya G. Joshi
    • 2
  1. 1.Department of Pharmaceutical SciencesSaurashtra UniversityRajkotIndia
  2. 2.Department of Animal Biotechnology, College of Veterinary Science and Animal HusbandryAnand Agricultural UniversityAnandIndia

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