Frontiers of Quantum Chemistry pp 377-399 | Cite as
Nuclear Quantum Effect and H/D Isotope Effect on Hydrogen-Bonded Systems with Path Integral Simulation
Abstract
In the past two decades, ab initio path integral (PI) simulation, in particular, ab initio path integral molecular dynamics simulation has reached its maturity and has been widely used to take account of nuclear quantum effects, such as zero-point vibrational energy and tunneling, in complex many-body systems. In particular, this method has significantly contributed to provide important insights into structures and fluctuation of the hydrogen-bonded systems as well as their isotopomers at finite temperature. In this chapter, we will review the recent advances in ab initio PI simulation. The development of an efficient algorithm for ab initio PI simulation and some applications will be featured. The efficient algorithm for path integral hybrid Monte Carlo method based on the second- and fourth-order Trotter expansion, which realizes large reduction of computational effort without loss of accuracy, will be described in detail. The applications focusing on the hydrogen-bonded systems, protonated and deprotonated water dimers (H5O2 + and H3O2 −), F−(H2O)n (n = 1–3) clusters, and hydrogen maleate anion demonstrate the ability and powerfulness of PI simulation.
Keywords
Ab initio path integral simulation Nuclear quantum effect Hydrogen-bonded structure Geometrical isotope effectNotes
Acknowledgements
This work is partly supported by Grants-in-Aid for Scientific Research (KAKENHI) of the Ministry of Education, Culture, Sports, Science and Technology (MEXT), Grant Numbers of 16K05676 (YK), 15KT0067, and 16H00780 (MT). Theoretical calculations were partly performed at the Research Center for Computational Science, Institute for Molecular Science, Japan, and the K computer and other computers provided by the RIKEN Advanced Institute for Computational Science through the HPCI System Research project.
References
- 1.R.P. Feynman, Rev. Mod. Phys. 20, 367 (1948)CrossRefGoogle Scholar
- 2.L.D. Fosdick, J. Math. Phys. 3, 1251 (1962)CrossRefGoogle Scholar
- 3.L.D. Fosdick, H.F. Jordan, Phys. Rev. 143, 58 (1966)CrossRefGoogle Scholar
- 4.H.F. Jordan, L.D. Fosdick, Phy. Rev. 171, 128 (1968)CrossRefGoogle Scholar
- 5.C. Chakravarty, Int. Rev. Phys. Chem. 16, 421 (1997)CrossRefGoogle Scholar
- 6.D.M. Ceperley, Rev. Mod. Phys. 67, 279 (1995)CrossRefGoogle Scholar
- 7.M. Sprik, M.L. Klein, D. Chandler, Phys. Rev. B 31, 4234 (1985)CrossRefGoogle Scholar
- 8.R.A. Friesner, R.M. Levy, J. Chem. Phys. 80, 4488 (1984)CrossRefGoogle Scholar
- 9.D. Chandler, P. Wolynes, J. Chem. Phys. 74, 4078 (1981)CrossRefGoogle Scholar
- 10.H.D. Raedt, B.D. Raedt, Phys. Rev. A 28, 3576 (1983)CrossRefGoogle Scholar
- 11.M. Takahashi, M. Imada, J. Phys. Soc. Jpn. 53, 964 (1984)Google Scholar
- 12.M. Takahashi, M. Imada, J. Phys. Soc. Jpn. 11, 3675 (1984)Google Scholar
- 13.M. Suzuki, Comm. Math. Phys. 51, 183 (1976)CrossRefGoogle Scholar
- 14.X.-P. Li, J.Q. Broughton, J. Chem. Phys. 86, 5094 (1987)CrossRefGoogle Scholar
- 15.B.J. Berne, D. Thirumalai, Ann. Rev. Phys. Chem. 37, 401 (1986)CrossRefGoogle Scholar
- 16.M.J. Gillan, in Computer Modelling of Fluids Polyers and Solids, ed. by C.R.A. Catlow, S.C. Parker, M.P. Allen (Kluwer, Dordrecht, The Netherlands, 1990), p. 155CrossRefGoogle Scholar
- 17.M. Parrinello, A. Rahman, J. Chem. Phys. 80, 860 (1984)CrossRefGoogle Scholar
- 18.R.W. Hall, B.J. Berne, J. Chem. Phys. 81, 3641 (1984)CrossRefGoogle Scholar
- 19.M.E. Tuckerman, B.J. Berne, G.J. Martyna, M.L. Klein, J. Chem. Phys. 99, 2796 (1993)CrossRefGoogle Scholar
- 20.D. Marx, M. Parrinello, Z. Phys. B, 95, 143 (1994)Google Scholar
- 21.D. Marx, M. Parrinello, Nature 375, 216 (1995)CrossRefGoogle Scholar
- 22.D. Marx, M. Parrinello, Science, 271, 179 (1996)Google Scholar
- 23.M.E. Tuckerman, D. Marx, M.L. Klein, M. Parrinello, Science 275, 817 (1997)CrossRefGoogle Scholar
- 24.D. Marx, M.E. Tuckerman, J. Hutter, M. Parrinelo, Nature 397, 601 (1999)CrossRefGoogle Scholar
- 25.T. Miyake, T. Ogitsu, S. Tsuneyuki, Phys. Rev. Lett. 81, 1873 (1998)CrossRefGoogle Scholar
- 26.H. Kitamura, S. Tsuneyuki, T. Ogitsu, T. Miyake, Nature 404, 259 (2000)CrossRefGoogle Scholar
- 27.D. Marx, M. Parrinello, J. Chem. Phys. 104, 4077 (1996)CrossRefGoogle Scholar
- 28.M.E. Tuckerman, D. Marx, M.L. Klein, M. Parrinello, J. Chem. Phys. 104, 5579 (1996)CrossRefGoogle Scholar
- 29.D. Marx, J. Hutter, Cambridge Univ. Press, Ab initio Molecular Mechanics: Basic Theory and Advanced Methods (2009)Google Scholar
- 30.B.J. Johnson, P.M.W. Gill, J.A. Pople, J. Chem. Phys. 98, 5612 (1993)CrossRefGoogle Scholar
- 31.J. Florián, B.J. Johnson, J. Phys. Chem. 99, 5899 (1995)CrossRefGoogle Scholar
- 32.M. Shiga, M. Tachikawa, S. Miura, J. Chem. Phys. 115, 9149 (2001)CrossRefGoogle Scholar
- 33.M. Shiga, K. Suzuki, M. Tachikawa, J. Chem. Phys. 132, 114104 (2010)CrossRefGoogle Scholar
- 34.A. Kaczmarek, M. Shiga, D. Marx, J. Phys. Chem. A 113, 1985 (2009)CrossRefGoogle Scholar
- 35.E.G. Diken, J.H. Headrick, J.R. Roscioli, J.C. Bopp, M.A. Johnson, J. Phys. Chem. A 109, 1487 (2005)CrossRefGoogle Scholar
- 36.J.M. Price, M.W. Crofton, Y.T. Lee, J. Phys. Chem. 95, 2182 (1991)CrossRefGoogle Scholar
- 37.H.M.E. Cardwell, J.D. Dunitz, L.E. Orgel, J. Chem. Soc., 3740 (1953)Google Scholar
- 38.C.L. Perrin, Pure Appl. Chem. 81, 571 (2009)CrossRefGoogle Scholar
- 39.M. Tachikawa, M. Shiga, J. Am. Chem. Soc. 127, 11908 (2005)CrossRefGoogle Scholar
- 40.K. Suzuki, M. Shiga, M. Tachikawa, J. Chem. Phys. 129, 144310 (2008)CrossRefGoogle Scholar
- 41.J.A. Platts, K.E. Laidig, J. Phys. Chem. 99, 6487 (1995)CrossRefGoogle Scholar
- 42.T. Asada, H. Haraguchi, K. Kitaura, J. Phys. Chem. A 105, 7423 (2001)CrossRefGoogle Scholar
- 43.H. Ishibashi, A. Hayashi, M. Shiga, M. Tachikawa, Chem. Phys. Chem. 9, 383 (2008)CrossRefGoogle Scholar
- 44.P. George, C.W. Bock, M. Trachtman, J. Phys. Chem. 87, 1839 (1983)CrossRefGoogle Scholar
- 45.C.C. Wilson, L.H. Thormas, C.A. Morrison, Chem. Phys. Lett. 381, 102 (2003)CrossRefGoogle Scholar
- 46.Y. Kawashima, M. Tachikawa, Chem. Phys. Lett. 571, 23 (2013)CrossRefGoogle Scholar
- 47.Y. Ogata, M. Daido, Y. Kawashima, M. Tachikawa, RSC Adv. 3, 25252 (2013)CrossRefGoogle Scholar
- 48.Y. Kawashima, K. Suzuki, M. Tachikawa, J. Phys. Chem. A 117, 5205 (2013)CrossRefGoogle Scholar
- 49.Y. Kawashima, M. Tachikawa, J. Chem. Theor. Comput. 10, 153 (2014)CrossRefGoogle Scholar
- 50.G.A. Jeffrey, An Introduction to Hydrogen Bonding (Oxford University Press, New York, 1997)Google Scholar
- 51.A. Kohen, H.H. Limbach (eds.), Isotope Effects in Chemistry and Biology (CRC Press, Boca Raton, 2005)Google Scholar
- 52.T. Steiner, Angew. Chem. Int. Ed. 41, 48 (2002)CrossRefGoogle Scholar
- 53.W.H. Robertson, M.A. Johnson, Annu. Rev. Phys. Chem. 54, 173 (2003)CrossRefGoogle Scholar
- 54.M. Kabeláč, P. Hobza, Chem. Eur. J. 7, 2067 (2001)CrossRefGoogle Scholar
- 55.J.A. Gerlt, P.G. Gassman, Biochemistry 32, 11943 (1993)CrossRefGoogle Scholar
- 56.W.W. Cleland, M.M. Kreevoy, Science 264, 1887 (1994)CrossRefGoogle Scholar
- 57.P.A. Frey, S.A. Whitt, J.B. Tobin, Science 264, 1927 (1994)CrossRefGoogle Scholar
- 58.S. Yamaguchi, H. Kamikubo, K. Kurihara, R. Kuroki, N. Niimura, N. Shimizu, Y. Yamazaki, M. Kataoka, Proc. Natl. Acad. Sci. U.S.A. 106, 440 (2009)CrossRefGoogle Scholar
- 59.S.O. Shan, S. Loh, D. Herschlag, Science 272, 97 (1996)CrossRefGoogle Scholar
- 60.D.B. Northrop, Acc. Chem. Res. 34, 790 (2001)CrossRefGoogle Scholar
- 61.T. Ishida, Biochemistry 45, 5413 (2006)CrossRefGoogle Scholar
- 62.S. Scheiner, T. Kar, J. Am. Chem. Soc. 117, 6970 (1995)CrossRefGoogle Scholar
- 63.J.P. Guthrie, Chem. Biol. 3, 163 (1996)CrossRefGoogle Scholar
- 64.A. Warshel, A. Papazyan, Proc. Natl. Acad. Sci. U.S.A. 93, 13665 (1996)CrossRefGoogle Scholar
- 65.K. Saito, H. Ishikita, Biochemistry 51, 1171 (2012)CrossRefGoogle Scholar
- 66.M.E. Tuckerman, D. Marx, Phys. Rev. Lett. 86, 4946 (2001)CrossRefGoogle Scholar
- 67.A. Nakayama, T. Taketsugu, M. Shiga, Chem. Lett. 38, 976 (2009)CrossRefGoogle Scholar
- 68.K. Suzuki, M. Tachikawa, M. Shiga, J. Chem. Phys. 132, 144108 (2010)CrossRefGoogle Scholar
- 69.K. Suzuki, M. Tachikawa, M. Shiga, J. Chem. Phys. 138, 184307 (2013)CrossRefGoogle Scholar
- 70.S.A. Chin, Phys. Rev. E 69, 046118 (2004)CrossRefGoogle Scholar
- 71.J.M. Headrick, J.C. Bopp, M.A. Johnson, J. Chem. Phys. 121, 11523 (2004)CrossRefGoogle Scholar
- 72.N.I. Hammer, E.G. Diken, J.R. Roscioli, M.A. Johnson, E.M. Myshakin, K.D. Jordan, A.B. McCoy, X. Huang, J.M. Bowman, S. Carter, J. Chem. Phys. 122, 224301 (2005)CrossRefGoogle Scholar
- 73.L.R. McCunn, J.R. Roscioli, M.A. Johnson, A.B. McCoy, J. Phys. Chem. B 112, 321 (2008)CrossRefGoogle Scholar
- 74.D.J. Wales, J. Chem. Phys. 110, 10403 (1999)CrossRefGoogle Scholar
- 75.M.E. Tuckerman, D. Marx, M.L. Klein, M. Parrinello, Nature 417, 925 (2002)CrossRefGoogle Scholar
- 76.M. Meot-Ner, Chem. Rev. 105, 213 (2005)CrossRefGoogle Scholar
- 77.X. Huang, B, J. Braams, J. M. Bowman. J. Chem. Phys. 122, 044308 (2005)CrossRefGoogle Scholar
- 78.A.B. McCoy, X. Huang, S. Carter, M.Y. Landeweer, J.M. Bowman, J. Chem. Phys. 122, 061101 (2005)CrossRefGoogle Scholar
- 79.D. Marx, Chem. Phys. Chem. 7, 1848 (2006)CrossRefGoogle Scholar
- 80.O. Vendrell, F. Gatti, D. Lauvergnat, H.-D. Meyer, J. Chem. Phys. 127, 184302 (2007)CrossRefGoogle Scholar
- 81.O. Vendrell, F. Gatti, H.-D. Meyer, J. Chem. Phys. 127, 184303 (2007)CrossRefGoogle Scholar
- 82.O. Vendrell, F. Gatti, H.-D. Meyer, Angew. Chem. Int. Ed. 46, 6918 (2007)CrossRefGoogle Scholar
- 83.Y. Yang, O. Kühn, Z. Phys, Chem. 222, 1375 (2008)Google Scholar
- 84.O. Vendrell, M. Brill, F. Gatti, D. Lauvergnat, H.-D. Meyer, J. Chem. Phys. 130, 234305 (2009)CrossRefGoogle Scholar
- 85.O. Vendrell, F. Gatti, H.-D. Meyer, J. Chem. Phys. 131, 034308 (2009)CrossRefGoogle Scholar
- 86.M. Kaledin, A.L. Kaledin, J.M. Bowman, J. Ding, J.M. Bowman, J. Phys. Chem. A 113, 7671 (2009)CrossRefGoogle Scholar
- 87.D. Marx, A. Chandra, M.E. Tuckerman, Chem. Rev. 110, 2174 (2010)CrossRefGoogle Scholar
- 88.X.-Z. Li, B. Walker, A. Michaelides, Proc. Natl. Acad. Sci. U.S.A. 108, 6369 (2011)CrossRefGoogle Scholar
- 89.T.L. Guasco, M.A. Johnson, A.B. McCoy, J. Phys. Chem. A 115, 5847 (2011)CrossRefGoogle Scholar
- 90.T. Ishimoto, M. Koyama, Chem. Phys. 392, 166 (2012)CrossRefGoogle Scholar
- 91.N. Agmon, Chem. Phys. Lett. 319, 247 (2000)CrossRefGoogle Scholar
- 92.L. Turi, W.S. Sheu, P. Rossky, Science 309, 914 (2005)CrossRefGoogle Scholar
- 93.M. Tuckerman, K. Laasonen, M. Spirk, M. Parrinello, J. Chem. Phys. 103, 150 (1995)CrossRefGoogle Scholar
- 94.J. Lobaugh, G.A. Voth, J. Chem. Phys. 104, 2056 (1996)CrossRefGoogle Scholar
- 95.H. Lapid, N. Agmon, M.K. Petersen, G.A. Voth, J. Chem. Phys. 122, 014506 (2005)CrossRefGoogle Scholar
- 96.W.H. Robertson, E.G. Diken, E.A. Price, J.W. Shin, M.A. Johnson, Science 299, 1367 (2003)CrossRefGoogle Scholar
- 97.E.A. Price, W.H. Robertson, E.G. Diken, G.H. Weddle, M.A. Johnson, Chem. Phys. Lett. 366, 412 (2002)CrossRefGoogle Scholar
- 98.C.C.M. Samson, W. Klopper, J. Mol. Struct. (THEOCHEM) 586, 201 (2002)CrossRefGoogle Scholar
- 99.A.B. McCoy, X. Huang, S. Carter, J.M. Bowman, J. Chem. Phys. 123, 064317 (2005)CrossRefGoogle Scholar
- 100.X. Huang, B.J. Braams, S. Carter, J.M. Bowman, J. Am. Chem. Soc. 126, 5042 (2004)CrossRefGoogle Scholar
- 101.W.H. Robertson, M.A. Johnson, Ann. Rev. Phys. Chem. 54, 173 (2003)CrossRefGoogle Scholar
- 102.W.H. Robertson, E.G. Diken, E.A. Price, J.-W. Shin, M.A. Johnson, Science 299, 1367 (2003)CrossRefGoogle Scholar
- 103.S.S. Xantheas, T.H. Dunning, J. Phys. Chem. 98, 13489 (1994)CrossRefGoogle Scholar
- 104.J. Kim, H.M. Lee, S.B. Suh, D. Majumdar, K.S. Kim, J. Chem. Phys. 113, 5259 (2000)CrossRefGoogle Scholar
- 105.G.M. Chaban, S.S. Xantheas, R.B. Gerber, J. Phys. Chem. A 107, 4952 (2003)CrossRefGoogle Scholar
- 106.S. Horvath, A.B. McCoy, J.R. Roscioli, M.A. Johnson, J. Phys. Chem. A 112, 12337 (2008)CrossRefGoogle Scholar
- 107.S.S. Xantheas, L. Dang, J. Phys. Chem. 100, 3989 (1996)CrossRefGoogle Scholar
- 108.S.S. Xantheas, J. Chem. Phys. 104, 8821 (1996)CrossRefGoogle Scholar
- 109.P. Weis, P.R. Kemper, T.M. Bowers, S.S. Xantheas, J. Am. Chem. Soc. 121, 3531 (1999)CrossRefGoogle Scholar
- 110.S.S. Xantheas, J. Phys. Chem. 100, 9703 (1996)CrossRefGoogle Scholar
- 111.O.M. Cabarcos, C.J. Weinheimer, J.M. Lisy, S.S. Xantheas, J. Chem. Phys. 110, 5 (1999)CrossRefGoogle Scholar
- 112.S.W. Peterson, H.A. Levy, J. Chem. Phys. 29, 948 (1958)CrossRefGoogle Scholar
- 113.S. Darlow, W. Cochran, Acta Crystallogr. 14, 1250 (1961)CrossRefGoogle Scholar
- 114.K. Nakamoto, Y.A. Sarma, G.T. Behnke, J. Chem. Phys. 42, 1662 (1965)CrossRefGoogle Scholar
- 115.H.R. Zelsmann, Z. Mielke, M.M. Ilczyszyn, Spectrochim. Acta 44A, 705 (1988)CrossRefGoogle Scholar
- 116.M.M. Ilczynszyn, J. Baran, H. Ratajczak, A.J. Barnes, J. Mol. Struct. 270, 499 (1992)CrossRefGoogle Scholar
- 117.J. Tomkinson, I.J. Braid, J. Howard, T.C. Waddington, Chem. Phys. 64, 151 (1982)CrossRefGoogle Scholar
- 118.J. Howard, J. Tomkinson, J. Eckert, J.A. Goldstone, A.D. Taylor, J. Chem. Phys. 78, 3150 (1983)CrossRefGoogle Scholar
- 119.F. Fillaux, N. Leygue, J. Tomkinson, A. Cousson, W. Paulus, Chem. Phys. 120, 387 (1999)CrossRefGoogle Scholar
- 120.S. Forsen, J. Chem. Phys. 31, 852 (1959)CrossRefGoogle Scholar
- 121.A. Wong, K.J. Pike, R. Jenkins, G.J. Clarkson, T. Anupõld, A.P. Howes, D.H.G. Crout, A. Samoson, R. Dupree, M.E. Smith, J. Phys. Chem. A 110, 1824 (2006)CrossRefGoogle Scholar
- 122.M. Fukai, T. Matsuo, H. Suga, J. Chem. Thermodyn. 20, 1337 (1988)CrossRefGoogle Scholar
- 123.G. Olovsson, I. Olovsson, M.S. Lehmann, Acta Crystallogr. C 40, 1521 (1984)CrossRefGoogle Scholar
- 124.C.L. Perrin, Science 266, 1665 (1994)CrossRefGoogle Scholar
- 125.G.E. Hall, J. Am. Chem. Soc. 100, 8264–8266 (1978)CrossRefGoogle Scholar
- 126.P. Schah-Mohammedi, I.G. Shenderovich, C. Deterring, H.-H. Limbach, P.M. Tolstoy, S.N. Smirnov, G.S. Denisov, N.S. Golubev, J. Am. Chem. Soc. 122, 12878–12879 (2000)CrossRefGoogle Scholar
- 127.Z. Latajka, H. Ratajczak, Chem. Phys. Lett. 49, 407 (1977)CrossRefGoogle Scholar
- 128.P. George, C.W. Bock, M. Trachtman, J. Phys. Chem. 87, 1839 (1983)CrossRefGoogle Scholar
- 129.M. Hodoscek, D. Hadzi, J. Mol. Struct. (Theochem) 209, 411 (1990)CrossRefGoogle Scholar
- 130.M.A. Rios, J. Rodriguez, Can. J. Chem. 71, 303 (1993)CrossRefGoogle Scholar
- 131.M. Garcia-Viloca, A. Gonzalez-Lafont, J.M. Lluch, J. Am. Chem. Soc. 119, 1081 (1997)CrossRefGoogle Scholar
- 132.M. Garcia-Viloca, A. Gonzalez-Lafont, J.M. Lluch, J. Am. Chem. Soc. 121, 9198 (1999)CrossRefGoogle Scholar
- 133.R.D. Bach, O. Dmitrenko, M.N. Glukhovtsev, J. Am. Chem. Soc. 123, 7134 (2001)CrossRefGoogle Scholar
- 134.H.-K. Woo, X.-B. Wang, L.-S. Wang, K.-C. Lau, J. Phys. Chem. A 109, 10633 (2005)CrossRefGoogle Scholar
- 135.S.X. Tian, H.-B. Li, J. Phys. Chem. A 111, 4404 (2007)CrossRefGoogle Scholar
- 136.F. Avbelj, M. Hodoscek, D. Hadzi, Spectrochim. Acta 41A, 89 (1985)CrossRefGoogle Scholar
- 137.H. Ratajczak, A. Barnes, J. Baran, A. Yaremko, Z. Latajka, P. Dopieralski, J. Mol. Struct. (Theochem) 887, 9 (2008)CrossRefGoogle Scholar
- 138.M.V. Vener, A.V. Manaev, V.G. Tsirelson, J. Phys. Chem. A 112, 13628 (2008)CrossRefGoogle Scholar
- 139.C.C. Wilson, L.H. Thomas, C.A. Morrison, Chem. Phys. Lett. 381, 102 (2003)CrossRefGoogle Scholar
- 140.C.C. Wilson, L.H. Thomas, C.A. Morrison, Chem. Phys. Lett. 399, 292 (2004)CrossRefGoogle Scholar
- 141.P. Dopieralski, C.L. Perrin, Z. Latajka, J. Chem. Theory Comput. 7, 3505 (2011)CrossRefGoogle Scholar