Gaining Insight into Plant Responses to Beneficial and Pathogenic Microorganisms Using Metabolomic and Transcriptomic Approaches

  • Fernando Matías Romero
  • María Marina
  • Fernando Luis Pieckenstain
  • Franco Ruben Rossi
  • María Elisa Gonzalez
  • Paulina Vignatti
  • Andrés Gárriz


Plants are constantly interacting with microorganisms. Many of them have the potential to cause disease, while many other may establish beneficial interactions where plants enhance their ability to incorporate important nutrients and improve disease resistance. During these interactions, plants must regulate the expression of thousands of genes, which ultimately triggers distinct hormonal signaling pathways and affects the concentration of numerous metabolites. Transcriptomics and metabolomics have played a pivotal role in identifying the genes and metabolites involved in such responses, which has given crucial hints to refine our current strategies for plant protection and crop yield improvement. However, there is still a gap on our knowledge on many features that distinguish the interplay between plants and microorganisms. This chapter initially discusses the contributions of these high-throughput technologies to the understanding of this field of research and ends with future prospects in the search for interaction-specific biomarker genes and metabolites.


Transcriptomics Metabolomics Plant-microobe interactions 



This work was supported by grants of Agencia Nacional de Promoción Científica y Tecnológica (ANPCyT) (PICT 2014-3286, 2012-1716, and 2013-0477) and Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) (PIP 114-201101-00367). A.G., M.M., M.E.G., and F.L.P. are members of the Research Career of Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). FMR and FRR are postdoctoral fellows of CONICET. P.V. is a fellow of ANPCyT.


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Copyright information

© Springer Nature Singapore Pte Ltd. 2017

Authors and Affiliations

  • Fernando Matías Romero
    • 1
  • María Marina
    • 1
  • Fernando Luis Pieckenstain
    • 1
  • Franco Ruben Rossi
    • 1
  • María Elisa Gonzalez
    • 1
  • Paulina Vignatti
    • 1
  • Andrés Gárriz
    • 1
  1. 1.Laboratorio de Interacciones Planta-microorganismoInstituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús/Universidad Nacional de General San Martín-Consejo Nacional de Investigaciones Científicas y Técnicas (IIB-INTECH/UNSAM-CONICET)ChascomúsArgentina

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