In silico Identification of Eukaryotic Promoters
The identification of promoters is essential for complete annotation of genomes and better understanding of gene regulatory networks. Experimental methods for promoter identification are costly, time-consuming and labor intensive. Hence, in silico methods are an attractive alternative. Computational methods for promoter prediction methods are easy, fast and can provide reliable results. A promoter prediction algorithm identifies promoter regions based on the idea that, promoter regions are different from other genomic regions in their features (sequence, context and structure). Promoter prediction algorithms are broadly classified as ab initio, hybrid and homology-based, depending on the information used for model design. The different approaches used in promoter prediction are briefly described here.
KeywordsPromoter prediction programs FirstEF CpGProD Eponine PromoterInspector PromPredict EP3 PromH
MB is a recipient of the J. C. Bose National Fellowship of DST, India. We thank Rajasekaran for assistance in the preparation of Fig. 4.1.
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