Modelling Plant Diseases for Decision Making in Crop Protection
Abstract
A plant disease model is a simplification of the relationships (between a patho-gen, a host plant, and the environment) that determine whether and how an epi-demic develops over time and space. This chapter describes an approach for de-veloping mechanistic, weather-driven, dynamic models which are suitable to be applied in precision crop protection. Model building consists of four steps: (I) defi-nition of the model purpose; (II) conceptualization; (III) development of the mathe-matical relationships; and (IV) model evaluation. Conceptualization is based on systems analysis; it assumes that the state of the pathosystem can be quantitatively determined and that changes in the system can be described by mathematical equations. A conceptual model describes the system (both conceptually and mathematically), and a set of driving models accounts for changes caused by the external variables. Two main types of conceptual models are described: plant- and pathogen-focused models. Model evaluation is the judgement of the overall adequacy of the model, which includes: verification, validation, uncertainty analysis, sensitivity analysis, and judgement of utility. Finally, the chapter briefly considers how models can be used as tools for decision making at different scales of time and space: from warning services to precision agriculture.
Keywords
Root Mean Square Error Powdery Mildew Crop Protection Driving Model Wetness DurationReferences
- Analytis S (1980) Obtaining of sub-models for modeling the entire life cycle of a pathogen. Z PflKrankh PflSchutz 87:371–382Google Scholar
- Anderson JR (1974) Simulation: methodology and application in agricultural economics. Rev Marketing Agric Econ 42:3–55Google Scholar
- Battilani P, Giosuè S, Racca P, Rossi V (1996a) A decision support system for Cercospora leaf spot management in sugarbeet. Proc IIRB Congress 59:33–44Google Scholar
- Battilani P, Racca P, Rossi V et al. (1996b) Validation of ONIMIL, a forecaster for primary infection of downy mildew on onion. Danish Inst Plant Soil Sci, SP Rep 15:9–18Google Scholar
- Battilani P, Rossi V, Racca P, Giosuè S (1997) ONIMIL – onion downy mildew, a forecaster for primary infection of downy mildew on onion. EPPO Bull 26:567–576CrossRefGoogle Scholar
- Bjerre KD (1999) Disease maps and site-specific fungicide application in winter wheat. In Stafford JV (ed) Precision Agriculture ‘99: Proceedings of the 2nd European Conference on Precision Agriculture. Sheffield Academic, SheffieldGoogle Scholar
- Bjerre KD, Jørgensen LN, Olesen JE (2006) Site-specific management of crop diseases. In: Srinivasan A (ed) Handbook of precision agriculture. principles and applications. CRC Press, Boca RatonGoogle Scholar
- Butt DJ, Jeger MJ (1985) The practical implementation of models in crop disease management. In: Gilligan CA (ed) Advances in plant pathology. Academic Press, New YorkGoogle Scholar
- Caffi T, Rossi V, Bugiani R et al. (2009) Evaluation of a model predicting primary infections of Plasmopara viticola in different grapevine-growing areas of Italy. J Plant Pathol (in press)Google Scholar
- Camase (1996) Register of agro-ecosystems models DLO research institute for agrobiology and soil fertility, Wageningen. http://wwwbibwaunl/camase. Accessed 06 May 2009
- Campbell CL, Madden LV (1990) Introduction to plant disease epidemiology. Wiley, New YorkGoogle Scholar
- De Vallavieille-Pope C, Giosuè S, Munk L et al. (2000) Assessment of epidemiological parameters and their use in epidemiological and forecasting models of cereal airborne diseases. Agronomie 20:715–727CrossRefGoogle Scholar
- de Vallavieille-Pope C, Huber L, Leconte M, Bethenod O (2002) Preinoculation effects of light quantity on infection efficiency of Puccinia striiformis and P triticina on wheat seedlings. Phytopathology 92:1308–1314PubMedCrossRefGoogle Scholar
- De Wit CT (1993) Philosophy and terminology. In: Leffelaar PA (ed) On system analysis and simulation of ecological processes. Kluwer Academic Publishers, DordrechtGoogle Scholar
- De Wolf ED, Isard SA (2007) Disease cycle approach to plant disease prediction. Annu Rev Phytopathol 45:91–918Google Scholar
- Frey HC, Patil S R (2002) Identification and review of sensitivity analysis methods. Risk Anal 22:553–78PubMedCrossRefGoogle Scholar
- Friesland H, Schrödter H (1988) The analysis of weather factors in epidemiology. In: Kranz J, Rotem J (eds) Experimental techniques in plant disease epidemiology, Springer-Verlag, BerlinGoogle Scholar
- Fry WE, Fohner GR (1985) Construction of prediction models I: forecasting disease development. In: Gilligan CA (ed) Advances in plant pathology. Academic Press, New YorkGoogle Scholar
- Giosuè S, Racca P, Rossi V (1995) Use of stochastic processes in simulating Cercospora leaf spot epidemics on sugarbeet. Phytopathol Mediterr 34:204–206Google Scholar
- Green IRA, Stephenson D (1986) Criteria for comparison of single event models. J Hydrol Sci 31:395–411CrossRefGoogle Scholar
- Hardwick NV (1998) Disease forecasting. In: Jones DG (ed) The epidemiology of plant diseases. Kluwer Academic, BostonGoogle Scholar
- Hau B (1985) Epidemiologische Simulatoren als Instrumente der Systemanalyse mit besonderer Berücksichtigung eines Modells des Gerstenmehltaus. Acta Phytomedica, PareyGoogle Scholar
- Hau B, Eisensmith SP, Kranz J (1985) Construction of temporal models II Simulation of aerial epidemics. In: Gilligan CA (ed) Advances in plant pathology. Academic Press, New YorkGoogle Scholar
- Hildebrand D, Sutton JC (1984) Relationship of temperature, moisture, and inoculum density to the infection cycle of Peronospora destructor. Phytopathology 74:444–1449CrossRefGoogle Scholar
- Jesperson GD, Sutton JC (1987) Evaluation of a forecaster for downy mildew of onion (Allium cepa L). Crop Prot 6:95–103CrossRefGoogle Scholar
- Kranz J (1974) The role and scope of mathematical analysis and modeling in epidemiology. In: Kranz J (ed) Epidemics of plant diseases. Springer-Verlag, BerlinCrossRefGoogle Scholar
- Kranz J (2003) Comparative epidemiology of plant diseases. Springer, New YorkCrossRefGoogle Scholar
- Kranz J, Hau B (1980) System analysis in epidemiology. Annu Rev Phytopathol 18:67–83CrossRefGoogle Scholar
- Kranz J, Rotem J (1988) Experimental techniques in plant disease epidemiology. Springer-Verlag, BerlinCrossRefGoogle Scholar
- Krause RA, Massie L B (1975) Predictive systems: modern approaches to disease control. Annu Rev Phytopathol 13:31–47CrossRefGoogle Scholar
- Leffelaar PA (1993) Basic elements of dynamic simulation. In: Leffelaar PA (ed) On system analysis and simulation of ecological processes. Kluwer Academic Publishers, DordrechtCrossRefGoogle Scholar
- Lehoczky J (1990) Statistical methods. In: Heyvan DP, Sobel MJ (eds) Stochastic models. Elsevier Science Publishers, AmsterdamGoogle Scholar
- Leonard KJ, Fry WE (1986) Plant disease epidemiology: population dynamic and management. Macmillam Publishing Company, New YorkGoogle Scholar
- Lin LK (1989) A concordance correlation coefficient to evaluate reproducibility. Biometrics 45:255–268PubMedCrossRefGoogle Scholar
- Madden LV, Ellis MA (1988) How to develop plant disease forecasters. In: Kranz J, Rotem J (eds) Experimental techniques in plant disease epidemiology. Springer-Verlag, New YorkGoogle Scholar
- Madden LW, Nutter FWJ (1995) Modeling crop losses at the field scale. Can J Plant Pathol 17: 124–127CrossRefGoogle Scholar
- Madden LV, Hughes G, van den Bosch F (2007) The study of plant disease epidemics. APS Press, St PaulGoogle Scholar
- Maloy OC (1993) Plant disease control: principles and practice. Wiley, New YorkGoogle Scholar
- Nash JE, Sutcliffe JV (1970) River flow forecasting through conceptual models part I –A discussion of principles. J Hydrol 10:282–290CrossRefGoogle Scholar
- Pascual P, Stiber N, Sunderland E (2003) Draft Guidance on the development, evaluation, and application of regulatory environmental Models. http://wwwepagov/crem/li-brary/CREM%20Guidance%20Draft%2012_03pdf. Accessed 06 May 2009
- Rabbinge R, de Wit CT (1989) Systems, models and simulation. In: Rabbinge R , Ward SA, van Laar HH (eds) Simulation and systems management in crop protection. Pudoc, WageningenGoogle Scholar
- Rabbinge R, Zadoks JC, Bastiaans L (1989) Population models. In: Rabbinge R, Ward SA, van Laar HH (eds) Simulation and system management in crop protection. PDOC, WageningenGoogle Scholar
- Rossi V, Giosuè S (2003) A dynamic simulation model for powdery mildew epidemics on winter wheat. EPPO Bull 33:389–396CrossRefGoogle Scholar
- Rossi V, Racca P (1996) Simulation of the infection of strawberry flowers and fruits by Botrytis cinerea. Danish Inst Plant Soil Sci, SP Rep 15:73–84Google Scholar
- Rossi V, Racca P, Battilani P (1994) A simulation model for Cercospora leaf spot on sugarbeet. Phytopathol Mediterr 33:105–112Google Scholar
- Rossi V, Racca P, Pancaldi D, Alberti I (1996) Appearance of Puccinia recondita f.sp. tritici on winter wheat: a simulation model. EPPO Bull 26:555–566CrossRefGoogle Scholar
- Rossi V, Racca P, Giosuè S, Battilani P (1997a) Decision support systems in crop protection: from analysis of the pathosystems to the computerized model. Petria 7 (suppl 1):7–26Google Scholar
- Rossi V, Racca P, Giosuè S et al. (1997b) A simulation model for the development of brown rust epidemics in winter wheat. Eur J Plant Pathol 103:453–465CrossRefGoogle Scholar
- Rossi V, Ponti I, Cravedi P (2000) The status of warning services for plant pests in Italy. EPPO Bull 30:19–29CrossRefGoogle Scholar
- Rossi V, Giosuè S, Pattori E et al. (2003) A model estimating the risk of Fusarium head blight on wheat. EPPO Bull 33:421–425CrossRefGoogle Scholar
- Rossi V, Giosuè S, Bugiani R (2007) A-scab (Apple-scab), a simulation model for estimating risk of Venturia inaequalis primary infections. EPPO Bull 37:300–308CrossRefGoogle Scholar
- Rossi V, Caffi T, Giosuè S, Bugiani R (2008) A mechanist model simulating primary infections of downy mildew in grapevine. Ecol Model 212:480–491CrossRefGoogle Scholar
- Rossi V, Salinari F, Pattori E et al. (2009) Predicting the dynamics of asco-spore maturation of Venturia pirina based on environmental factors. Phytopathology 99:453–461PubMedCrossRefGoogle Scholar
- Rossing WAH, Daamen RA, Jansen MJW (1994) Uncertainty analysis applied to supervised control of aphids and brown rust in winter wheat Part 2 Relative importance of different components of uncertainty. Agric Syst 44:449–460CrossRefGoogle Scholar
- Rykiel EJ Jr (1996) Testing ecological models: the meaning of validation. Ecol Model 90:229–244CrossRefGoogle Scholar
- Sall MA (1980) Uses of stochastic simulation: grape powdery (example). J Plant Dis 87:397–403Google Scholar
- Salinari F, Giosuè S, Tubiello FN et al. (2006) Downy mildew (Plasmopara viticola) epidemics on grapevine under climate change. Glob Change Biol, 12:1299–1307CrossRefGoogle Scholar
- Salinari F, Rossi V, Manici LM (2008) A model framework for simulating plant disease epidemics. Ital J Agron 3 (suppl 3):751–752Google Scholar
- Shrum RD (1978) Forecasting of epidemics. In: Horsfall JG (ed) Plant Disease. Academic Press, New YorkGoogle Scholar
- Snedecor GW, Cochran WG (1973) Statistical Methods. The Iowa State University Press, AmesGoogle Scholar
- Spada G, Carli G, Ponti I et al. (2001) Use of a model simulating Taphrina deformans infection on peaches for optimal disease control. EPPO Bull 24:319–324Google Scholar
- Teng PS (1981) Validation of computer models of plant disease epidemics: a review of philosophy and methodology. Z PflKrankh PflSchutz 88:49–63.Google Scholar
- Teng PS, Blackie MJ, Close RC (1980) Simulation of barley leaf rust epidemic: structure and validation of BARSIM-I. Agric Sys 5:85–103CrossRefGoogle Scholar
- Vanderplank JE (1963) Plant diseases: epidemics and control. Academic Press, LondonGoogle Scholar
- Wainwright J, Mulligan M (2004) Environmental modeling finding simplicity in complexity. Wiley, ChichesterGoogle Scholar
- Wang N, Zhang N, Wang M (2006) Wireless sensors in agriculture and food industry – Recent development and future perspective. Comput Electron Agric 50: 1–14CrossRefGoogle Scholar
- Yuen JE, Hughes G (2002) Bayesian analysis of plant disease prediction. Plant Pathol 51:407–412Google Scholar
- Zadoks JC (1979) Simulation of epidemics: problems and applications. EPPO Bull 9:227–234CrossRefGoogle Scholar
- Zadoks JC (1984) A quarter century of disease warning, 1958–1983. Plant Dis 68:352–55Google Scholar
- Zadoks JC, Schein RD (1979) Epidemiology and plant disease management. Oxford University Press, New YorkGoogle Scholar