Cooperation of Two Quinone-Binding Sites in the Oxidation of Substrates by Cytochrome bo

  • Mariko Sato-Watanabe
  • Tatsushi Mogi
  • Hideto Miyoshi
  • Yasuhiro Anraku
Conference paper
Part of the Keio University Symposia for Life Science and Medicine book series (KEIO, volume 1)

Summary

Cytochrome bo is a terminal quinol oxidase of the aerobic respiratory chain of Escherichia coli and catalyzes not only the scalar protolytic reactions but also redox-coupled proton pumping. Structure-function studies of the quinol oxidation site (QL) using systematically selected quinone analogues, 1,4-benzoquinones, substituted phenols, and ubiquinone-2 derivatives revealed the structural features of the quinol oxidation site. We found further that bacterial quinol oxidases share common features of the quinol oxidation site irrespective of their structural similarities. In addition, we identified the presence of a tightly bound ubiquinone-8 (QH) and examined the possible roles of the QH site in the two-electron oxidation of substrates at the QL site and in mediating sequential one-electron transfer from QL to the low-spin heme b. Based on these observations, we discuss molecular mechanism of the substrate oxidation by cytochrome bo.

Key words

Cytochrome bo Intramolecular electron transfer Semiquinone radical Quinol oxidation site Quinone analogues 

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References

  1. 1.
    Anraku Y, Gennis RB (1987) The aerobic respiratory chain of Escherichia coli. Trends Biochem Sci 12: 262–266CrossRefGoogle Scholar
  2. 2.
    Saraste M (1990) Structural features of cytochrome oxidase. Q Rev Biophys 23: 331–336PubMedCrossRefGoogle Scholar
  3. 3.
    Mogi T, Nakamura H, Anraku Y (1994) Molecular structure of a heme-copper redox center of the Escherichia coli ubiquinol oxidase: evidence and model. J Biochem (Tokyo) 116: 471–477Google Scholar
  4. 4.
    Garcia-Horsman JA, Barquera B, Rumbley J, et al. (1994) The superfamily of hemecopper respiratory oxidases. J Bacteriol 176: 5587–5600PubMedGoogle Scholar
  5. 5.
    Iwata S, Ostermeier C, Ludwig B, et al. (1995) Structure at 2.8Å resolution of cytochrome c oxidase from Paracoccus denitrificans. Nature 376: 660–669PubMedCrossRefGoogle Scholar
  6. 6.
    Tsukihara T, Aoyama H, Yamashita E, et al. (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å. Science 272: 1136–1144PubMedCrossRefGoogle Scholar
  7. 7.
    Wilmanns M, Lappalainen P, Kelly M, et al. (1995) Crystal structure of the membrane-exposed domain from a respiratory quinol oxidase complex with an engineered dinuclear copper center. Proc Natl Acad Sci USA 92: 11955–11959PubMedCrossRefGoogle Scholar
  8. 8.
    Welter R, Gu LQ, Yu L, et al. (1994) Identification of the ubiquinol-binding site in the cytochrome boa-ubiquinol oxidase of Escherichia coli. J Biol Chem 269: 28834–28838PubMedGoogle Scholar
  9. 9.
    Castresana J, Lübben M, Saraste M, et al. (1994) Evolution of cytochrome oxidase, an enzyme older than atomospheric oxygen. EMBO J 13: 2516–2525PubMedGoogle Scholar
  10. 10.
    Kita K, Konishi K, Anraku Y (1984) Terminal oxidases of Escherichia coli aerobic respiratory chain. I. Purification and properties of cytochrome b562-o complex from cells in the early exponential phase of aerobic growth. J Biol Chem 259: 3368–3374PubMedGoogle Scholar
  11. 11.
    Matsushita K, Patel L, Kaback HR (1984) Cytochrome o type oxidase from Escherichia coli. Characterization of the enzyme and mechanism of electrochemical proton gradient generation. Biochemistry 23: 4703–4714PubMedCrossRefGoogle Scholar
  12. 12.
    Meunier B, Madgwick SA, Reil E, et al. (1995) New inhibitors of the quinol oxidation sites of bacterial cytochromes bo and bd. Biochemistry 34: 1076–1083PubMedCrossRefGoogle Scholar
  13. 13.
    Sato-Watanabe M, Mogi T, Miyoshi H, et al. (1994) Structure-function studies on the ubiquinol oxidation site of the cytochrome bo complex from Escherichia coli using pbenzoquinones and substituted phenols. J Biol Chem 269: 28899–28907PubMedGoogle Scholar
  14. 14.
    Hansch C, Leo A (1979) In: Substituent constants for correlation analysis in chemistry and biology. Wiley, New YorkGoogle Scholar
  15. 15.
    Bondi A (1964) van der Waals volumes and radii. J Phys Chem 68:441–451CrossRefGoogle Scholar
  16. 16.
    Sakamoto K, Miyoshi H, Takegami K, et al. (1996) Probing substrate binding site of the Escherichia coli quinol oxidases using synthetic ubiquinol analogues. J Biol Chem 271: 29897–29902PubMedCrossRefGoogle Scholar
  17. 17.
    Okamura MY, Feher G (1992) Proton transfer in reaction center from photosynthetic bacteria. Annu Rev Biochem 61: 861–896PubMedCrossRefGoogle Scholar
  18. 18.
    Mitchell P (1976) Possible molecular mechanisms of the protonmotive function of cytochrome system. J Theor Biol 62: 327–367PubMedCrossRefGoogle Scholar
  19. 19.
    Brandt U (1996) Energy conservation by bifurcated electron-transfer in the cytochrome-bc, complex. Biochim Biophys Acta 1275: 41–46PubMedCrossRefGoogle Scholar
  20. 20.
    Orii Y, Mogi T, Sato-Watanabe M, et al. (1995) Facilitated intramolecular electron transfer in the Escherichia coli bo-type ubiquinol oxidase requires chloride. Biochemistry 34: 1127–1132PubMedCrossRefGoogle Scholar
  21. 21.
    Wang J, Rumbley J, Ching YC, et al. (1995) Reaction of cytochrome bo, with oxygen: extra redox center(s) are present in the protein. Biochemistry 34: 15504–15511PubMedCrossRefGoogle Scholar
  22. 22.
    Sato-Watanabe M, Mogi T, Ogura T, et al. (1994) Identification of a novel quinone-binding site in the cytochrome bo complex from Escherichia coli. J Biol Chem 269: 28908–28912PubMedGoogle Scholar
  23. 23.
    Svensson-Ek M, Thomas JW, Gennis RB, et al. (1996) Kinetics of electron and proton transfer during the reaction of wild type and helix VI mutants of cytochrome bo, with oxygen. Biochemistry 35: 13673–13680PubMedCrossRefGoogle Scholar
  24. 24.
    Puustinen A, Verkhovsky MI, Morgan JE, et al. (1996) Reaction of the Escherichia coli quinol oxidase cytochrome bo with dioxygen: the role of a bound ubiquinone molecule. Proc Natl Acad Sci USA 93: 1545–1548PubMedCrossRefGoogle Scholar
  25. 25.
    Zickermann I, Anemüller S, Richter OMH, et al. (1996) Biochemical and spectroscopic properties of the four-subunit quinol oxidase (cytochrome ba,) from Paracoccus denitrificans. Biochim Biophys Acta 1277: 93–102PubMedCrossRefGoogle Scholar
  26. 26.
    Sato-Watanabe M, Itoh S, Mogi T, et al. (1995) Stabilization of a semiquinone radical at the high-affinity quinone-binding site (QH) of the Escherichia coli bo-type ubiquinol oxidase. FEBS Lett 374: 265–269PubMedCrossRefGoogle Scholar
  27. 27.
    Ingledew WJ, Ohnishi T, Salerno JC (1995) Studies on a stabilization of ubisemiquinone by Escherichia coli quinol oxidase, cytochrome bo. Eur J Biochem 227: 903–908PubMedCrossRefGoogle Scholar
  28. 28.
    Osborn JP, Musser SM, Scultz BE, et al. (1996) Rapid formation of a ubisemiquinone species upon oxidation of quinol by the cytochrome bo, from Escherichia coli. Keio J Med 45: S52Google Scholar
  29. 29.
    Sato-Watanabe M, Mogi T, Miyoshi H, et al. (1995) Characterization of the quinol oxidation site of the E. coli cytochrome bo complex. Biophys J 68: A318Google Scholar
  30. 30.
    Yang FD, Yu L, Yu CA, et al. (1986) Use of an azido-ubiquinone derivative to identify subunit I as the ubiquinol-binding site of the cytochrome d terminal oxidase complex of Escherichia coli. J Biol Chem 261: 14987–14990PubMedGoogle Scholar

Copyright information

© Springer-Verlag Tokyo 1998

Authors and Affiliations

  • Mariko Sato-Watanabe
    • 1
  • Tatsushi Mogi
    • 1
  • Hideto Miyoshi
    • 2
  • Yasuhiro Anraku
    • 1
  1. 1.Department of Biological Sciences, Graduate School of ScienceUniversity of TokyoBunkyo-ku, Tokyo 113Japan
  2. 2.Department of Agricultural ChemistryKyoto UniversitySakyo-ku, Kyoto 606Japan

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