Replication and Maintenance of Bacterial Plasmids

  • Christopher M. Thomas
  • Grazyna Jagura-Burdzy
  • Kalliope Kostelidou
  • Peter Thorsted
  • Malgorzata Zatyka
Conference paper
Part of the NATO ASI Series book series (volume 103)

Abstract

By definition, plasmids are non-essential extrachromosomal elements. However, most bacteria carry at least one plasmid which can vary from a few kb to hundreds of kb and the plasmid component of the DNA in a bacterial cell can be as high as 10% or more. A large proportion of naturally occurring plasmids (as opposed to ones that have been modified so that they cannot transfer) can transfer by one means or other — conjugative transfer, transduction or even transformation. Since a plasmid does not need to recombine with endogenous DNA to become established in a new strain it allows the genes carried on the plasmid to be accessible to many strains and species where the plasmid can replicate. hi addition, if conjugative plasmids become integrated into the bacterial chromosome they can promote the exchange of chromosomal DNA. They thus facilitate sex between bacteria which results in the recombination of bacterial genes. In this way the plasmid component of the genre provides a resource of biodiversity on which bacterial communities can draw under conditions of selective pressure. Those individuals who possess the best combinations of chromosomal and plasmid-encoded genes for a specific physical or nutritional niche will dominate but other genes can persist as minor components within the community or in adjacent communities.

Keywords

Replication Origin Plasmid Copy Number Plasmid Replication Rolling Circle Replication IncP Plasmid 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Amuthan G, Mahadevan A (1994) Replicon typing of plasmids from phytopathogenic xanthomonads. Plasmid 32: 328–332PubMedCrossRefGoogle Scholar
  2. Austin S (1988) Plasmid partition. Plasmid 20: 1–9PubMedCrossRefGoogle Scholar
  3. Balzer D, Ziegelin G, Pansegrau W, Kruft V, Lanka E (1992) KorB protein of promiscuous plasmid RP4 recognises inverted sequence repetitions in regions essentail for conjugative transfer. Nucl Acids res 20: 1851–1858PubMedCrossRefGoogle Scholar
  4. Bernard P, Couturier M (1992) Cell killing by the F plasmid CcdB protein involves poisoning of DNA-topoisomerase II complexes. J Mol Biol 226: 735–745PubMedCrossRefGoogle Scholar
  5. Brendler T, Abeles A, Austin S (1991) Critical sequences in the core of the P1 plasmid replication origin. J Bacteriol 173: 3935–3942PubMedGoogle Scholar
  6. Bruand C, Le Chatellier E, Ehrlich SD, Janniere L (1993) A fourth class of theta-replicating plasmids: the pAM(31 family from Gram-positive bacteria. Proc Natl Acad Sci USA 90: 11668–11672PubMedCrossRefGoogle Scholar
  7. Burlage RS, Bemis LA, Layton AC, Sayler GS, Larimer F (1990) Comparative genetic organisation of incompatibility group P degradative plasmids. J Bacteriol 172: 6818–6825PubMedGoogle Scholar
  8. Cabello P, Timmis K, Cohen SN (1976) Replication control in a composite plasmid constructed by in vitro linkage of two distinct replicons. Nature 259: 285–290PubMedCrossRefGoogle Scholar
  9. Chikami GK, Guiney DG, Schmidhauser TJ, Helinski DR (1985) Comparison of ten IncP plasmids: homology in the regions involved in plasmid replication. J Bacteriol 162: 656–660PubMedGoogle Scholar
  10. Couturier M, Bex F, Bergquist PL, Mass WK (1988) Identification and classification of bacterial plasmids. Microbiol Rev 52: 375–395PubMedGoogle Scholar
  11. Durland RH, Helinski DR (1987) The sequence of the 43-kilodalton tifA protein is required for efficient replication or maintenance of minimal RK2 replicons in Pseudornonas aeruginosa. Plasmid 18: 164–169PubMedCrossRefGoogle Scholar
  12. Durland RH, Helinski DR (1990) Replication of the broad host range plasmid RK2: direct measurement of intracellular concentrations of the essentail TrfA replication proteins and their effect on plasmid copy number. J Bacteriol 172: 3849–3858PubMedGoogle Scholar
  13. Ebert L, Kristensen C, Givskov M, Grohmann E, Gerlitz M, Schwab H (1994) Analysis of the multimer resolution system encoded by the parCBA operon of the broad-host-range plasmid RP4. Mol Microbiol 6, 1969–1979CrossRefGoogle Scholar
  14. Fang F, Helinski DR (1991) Broad-host range properties of plasmid RK2: importance of overlapping genes encoding the plasmid replication protein TrfA. J. Bacteriol. 173: 5861–5868PubMedGoogle Scholar
  15. Fernandez-Tresguerres ME, Martin M, Garcia de Viedma D, Giraldo R, Diaz-Orejas R (1995) Host growth temperature and a conservative substitution in the replication protein of pPS10 influence host range. J Bacteriol 177: 4377–4384PubMedGoogle Scholar
  16. Filutowicz ME, Uhlenhopp O, Helinski DR (1986) Binding of purified wild-type and mutant at initiation proteins to a replication origin of plasmid R6K. J Mol Biol 187: 225–239PubMedCrossRefGoogle Scholar
  17. Franch T & Gerdes K (1996) Programmed cell death in bacteria-translational repression by messenger-RNA end-pairing. Mol Microbiol 21, 1049–1060PubMedCrossRefGoogle Scholar
  18. Gerdes K, Bech FW, Jorgensen ST, Lochner-Olsen A, Rasmussen PB, Atlung T, Boe L, Molin S, von Meyenbcrg K (1986) Mechanism of post-segregational killing by the hok gene product of the parB system of plasmid R1 and its homology with the rely gene product of the E. coli relB operon. EMBO J 5: 2023–2029PubMedGoogle Scholar
  19. Gerdes K, Poulsen LK, Thisted T, Nielsen AK, Martinussen J, Andreasen PH (1990) The hok killer gene family in Gram-negative bacteria. New Biologist 2: 946–956PubMedGoogle Scholar
  20. Gerlitz M, Hrabak O, Schwab H (1990) Partitioning of broad host range plasmid RP4 is a complex system involving site-specific recombination. J Bacteriol 172: 6194–6203PubMedGoogle Scholar
  21. Gotz A, Pukall R, Smit E, Tietze E, Prager R, Tschape H, van Elsas JD, Smalla K (1996) Detection and characterisation of broad-host-range plasmids in environment bacteria by PCR. App Environ Microbiol 62: 2621–2628Google Scholar
  22. Gruss A, Ehrlich SD (1989). The family of highly interrelated single-stranded deoyxribonucleic acid plasmids. Microbiol Rev 53: 231–241.PubMedGoogle Scholar
  23. Hehmtetter CE, Thornton M, Zhou P, Bogan JA, Leonard AC, Grimwade JA (1997) Replication and segregation of a miniF plasmid during the division cycle of Escherichia coli. J Bacteriol 179: 1393–1399Google Scholar
  24. Hill K.E, Weightran AJ, Fry JC (1992) Isolation and screening of plasmids from the epilithonwhich mobilise recombinant plasmid pDl0. App Enviro Microbiol 58: 1292–1300Google Scholar
  25. Ingram LC, Richmond MH, Sykes RB (1973) Molecular characterisation of the R-factors implicated in the carbenicillin resistance of of a sequence of Pseudomonas aeruginosa strains isolated from burns. Antimicrob. Ag. Chemother. 3: 279–288Google Scholar
  26. Itoh T, Tomizawa J-I (1980) Formation of an RNA primer for initiation of replication of ColE1 DNA by ribonuclease H. Proc Natl Acad Sci USA 77: 2450–2454PubMedCrossRefGoogle Scholar
  27. Jagura-Burdzy G, Khanim F, Smith CA, Thomas CM (1992) Crosstalk between plasmid vegetative replication and conjugative transfer: repression of the trfA operon by trbA of broad host range plasmid RK2. Nucl Acids Res 20: 3939–3944PubMedCrossRefGoogle Scholar
  28. Jagura-Burdzy G, Thomas CM (1994) KorA protein of promiscuous plasmid RK2 controls a transcriptional switch between divergent operons for plasmid replication and conjugative transfer. Proc. Natl. Acad. Sci. USA 91: 10571–10575PubMedCrossRefGoogle Scholar
  29. Jagura-Burdzy G, Thomas CM (1995) Purification of KorA protein from broad host range plasmid RK2: definition of a hierarchy of KorA operators. J Mol Biol 253: 39–50PubMedCrossRefGoogle Scholar
  30. Kolter R, Helinski DR (1978) Activity of replication terminus of R6K in hybrid replicons in Escherichia Coli. J Mol Biol 124: 425–441PubMedCrossRefGoogle Scholar
  31. Kittel B, Helinski DR (1991) Iteron inhibition of plasmid RK2 replication in vitro: evidence for intermolecular coupling of replication origins as a mechanism of replication control. Proc Natl Acad Sci USA 88: 1389–1393CrossRefGoogle Scholar
  32. Lacatena RM, Cesareni G (1983) Interaction between RNAI and the primer precursor in the regulation of ColEl replication. J Mol Biol 170: 635–650PubMedCrossRefGoogle Scholar
  33. Lanka E, Furste PJ, Yakobso E, Guiney DG (1985) Conserved regions at the primase locus of the IncPa and IncP(3 plasmids. Plasmid 14: 217–223PubMedCrossRefGoogle Scholar
  34. Lanka E, Wilkins BM (1995) DNA processing reactions in bacterial conjugation. Ann Rev Biochem 64: 141–169PubMedCrossRefGoogle Scholar
  35. Lessi M, Balzer D, Pansegrau W, Lanka E (1992) Sequence similarities between the RP4 Tra2 and Ti VirB region strongly support the conjugative model for T-DNAtransfer.J Biol Chen 267: 20471–20480Google Scholar
  36. Lobocka M, Yannolinsky M (1996) P1 plasmid partition-a mutational analysis of ParB. J Mol Biol 259: 366–382PubMedCrossRefGoogle Scholar
  37. Macartney D, Williams DR, Stafford T, Foster A, Thomas CM (1997) Divergence and conservation of the partitioning and global regulation functions in the central control region of the IncP plasmids RK2 and R751. Microbiol In pressGoogle Scholar
  38. Manen D, Caro L (1991) The replication of plasmid pSC101. Mol Microbiol 5: 233–237PubMedCrossRefGoogle Scholar
  39. McEachern MJ, Bott MA, Tooker PA, Helinski DR (1989) Negative control of plasmid R6K replication: possible role of intermolecular coupling of replication origins. Proc Natl Acad Sci USA 86: 7942–7946PubMedCrossRefGoogle Scholar
  40. Meijer WJJ, Venema G, Bron S (1995) Characterisation of single strand origins of cryptic rolling circle plasmids from Bacillus subtilis. Nuel Acids Res 23: 612–619CrossRefGoogle Scholar
  41. Miele L, Strack B, Krift V, Lanka E (1991) Gene organisation and nucleotide sequence of the primase region of IncP plasmids RP4 and R751. DNA Seq 2: 145–162PubMedGoogle Scholar
  42. Motallebi-Veshareh M, Rouch D, Thomas CM (1990) A family of ATPases involved in active partitioning of diverse bacterial plasmids. Mol Microbiol 4: 1445–1463CrossRefGoogle Scholar
  43. Motallebi-Veshareh M, Balzer D, Lanka E, Jagura-Burdzy G, Thomas CM (1992) Conjugative transfer functions of broad host range plasmid RK2 are coregulated with vegetative replication. Mol Microbiol 6: 907–920PubMedCrossRefGoogle Scholar
  44. Mukhopadhyay G, Chattoraj DK (1993) Conformation of the origin of Pl plasmid replication. Initiator protein-induced wrapping and intrinsic tnstacking. J Mol Biol 231: 19–28PubMedCrossRefGoogle Scholar
  45. Muraiso K, Tokino T, Murotsu T, Matsubara K (1987) Replication of mini-F plasmid in vitro promoted by purified E protein. Mol Gen Genet 206: 519–521CrossRefGoogle Scholar
  46. Nishiguchi R, Takanami M, Oka A (1987) Characterisation and sequence determination of the hairy-root inducing plasmid pRiA4b. Mol Gen Genet 206: 1–8CrossRefGoogle Scholar
  47. Novick RP (1989) Staphylococcal plasmids and their replication. Ann Rev Microbiol 43: 537–565CrossRefGoogle Scholar
  48. Pal SK, Chattoraj D (1988) P1 plasmid replication: initiator sequestration is inadequate to explain control by initiator-binding sites. J Bacteriol 170: 3554–3560PubMedGoogle Scholar
  49. Pansegrau W, Lanka E. (1987) Conservation of a common `backbone’ in the genetic organisation of the IncP plasmids RP4 and R751. Nuel Acids Res 15: 23–85.Google Scholar
  50. Pansegrau W, Lanka E, Barth PT, Figurski D, Gainey DG, Haas D, Helinski DR, Schwab H, Stanisich VA, Thomas CM (1994) Complete nucleotide sequence of Birmingham IncPa plasmids. Compilation and comparative analysis. J Mol Biol 239: 623–663.PubMedCrossRefGoogle Scholar
  51. Patient ME, Summers DK (1993) ColE1 multimer formation triggers inhibition of Escherichia coli cell division. Mol Microbiol 9: 1089–1095.PubMedCrossRefGoogle Scholar
  52. Perri S, Helinski DR, Toukdarian A (1991) Interaction ofplasmid encoded replication initiation proteins with the origin of DNA replication in the broad host range plasmid RK2. J Biol Chem 266: 12536–12543PubMedGoogle Scholar
  53. Pritchard RH, Barth, BT, Collins J (1969) Control of DNA synthesis in bacteria. Symp Soc Gen Microbiol 19: 263–297Google Scholar
  54. Roberts RC, Strom A, Helinski DR (1994) The parDE operon of broad-host-range plasmid RK2 specifies growth inhibition associated with plasmid loss. J Mol Biol 237: 35–51PubMedCrossRefGoogle Scholar
  55. Shah DS, Cross MA, Porter D, Thomas CM (1995) Dissection of the core and auxiliary sequences in the vegetative replication origin of promiscuous plasmid RK2. J Mol Bio L 254: 608–622CrossRefGoogle Scholar
  56. Shingler V, Thomas CM (1989). Analysis of nonpolar insertion mutations in the tifA gene of IncP plasmid RK2 which affect its broad-host-range property. Biochim Biophys Acta 1007: 301–308PubMedGoogle Scholar
  57. Smith CA, Thomas CM (1987) Comparison of the organisation of the genomes of phenotypically diverse plasmids of incompatibility group P: members of the IncPß subgroup are closely related. Mol Gen Genet 206: 419–427PubMedCrossRefGoogle Scholar
  58. Smith CA, Thomas CM (1989). Relationships and evolution of IncP plasmids. In Promiscuous Plasnzids of Gram-negative Bacteria, pp 57–77. Edited by C.M. Thomas. London: Academic Press.Google Scholar
  59. Smith CA, Pinkney M, Guiney DG, Thomas CM (1993) The ancestral IncP replication system consisted of contiguous oriV and trfA segments as deduced from a comparison of the nucleotide sequences of diverse IncP plasmids. J Gen Microbiol 139: 1761–1766PubMedGoogle Scholar
  60. Summers DK, Beton CWH, Withers HL (1993) Multicopy plasmid instability: the dinner catastrophe hypothesis. Mol Microbiol 8: 1031–1038PubMedCrossRefGoogle Scholar
  61. Summers DK, Sherratt DJ (1984) Multimerisation of high copy number plasmids causes instability: ColE1 encodes a determinant essential for plasmid monomerisation. Cell 36: 1097–1103PubMedCrossRefGoogle Scholar
  62. Tabata S, Hooykaas PJJ, Oka A (1989) Sequence determination and characterisation of the replicator region in the tumour-inducing plasmid pTiB6S3. J Bacteriol 171: 1665–1672PubMedGoogle Scholar
  63. Thisted T, Sorensen NS, Gerdes K (1995) Mechanism of post-segregational killing-the secondary structure analysis of the entire hok messenger RNA from plasmid R1 suggests foldback stricture that prevents translation and antisense binding. J Mol Biol 247: 859–873PubMedCrossRefGoogle Scholar
  64. Theophilus BDM, Thomas CM (1987) Nucleotide sequence of the transcriptional repressor gene KorB which plays a key role in regulation f the copy number of broad host rnge plasmid RK2. Noel Acids Res 15: 7443–7450CrossRefGoogle Scholar
  65. Thomas CM (1986). Evidence for the involvement of the incC locus of broad host range plasmid RK2 in plasmid maintenance. Plasmid 16: 15–29PubMedCrossRefGoogle Scholar
  66. Thomas CM, Cross MA, Hussain AAK, Smith CA (1984) Analysis of the copy number control elements in the region of the vegetative replication origin of the broad host range plasmid RK2. EMBO J 3: 57–63PubMedGoogle Scholar
  67. Thomas CM, Meyer R, Helinski DR (1980). Regions of the broad host-range plasmid RK2 which are essential for replication and maintenance. J Bacteriol 141: 213–222PubMedGoogle Scholar
  68. Thomas CM, Smith CA (1987) Incompatibility group P plasmids: genetics, evolution and use in genetic manipulation. Ann Rev Microbiol 41: 77–101CrossRefGoogle Scholar
  69. Thomas CM, Stalker DM, Helinski DR (1981) Replication and incompatibility properties of segments of the origin region of the broad host range plasmid RK2. Mol Gen Genet 181: 1–7PubMedCrossRefGoogle Scholar
  70. Thomas CM, Stalker DM, Helinski DR (1981) Replication and incompatibility properties of segments of the origin region of the broad host range plasmid RK2. Mol Gen Genet 181: 1–7PubMedCrossRefGoogle Scholar
  71. Tomizawa J-I (1986) Control of ColE1 plasmid replication: binding of RNAI to RNAII and inhibition of primer formation. Cell 47: 89–97PubMedCrossRefGoogle Scholar
  72. Turner SL, Rigottier-Gois L, Power RS, Armarger N, Young JPW (1996) Diversity of repC plasmid-replication sequences in Rhizobium leguminosarwn. Microbiol 142: 1705–1713CrossRefGoogle Scholar
  73. Villaroel R, Hedges RW, Maenhaut R, Leemans J, Engler G, van Montagu MM, Schell J (1983). Heteroduplex analysis of P-plasmid-evolution: the role of insertion and deletion of transposable elements. Mol Gen Genet 189: 390–399CrossRefGoogle Scholar
  74. Wagner EGH, Simons RW (1994) Antisense RNA control in bacteria, phages and plasmids. Ann Rev Microbiol 48: 713–742CrossRefGoogle Scholar
  75. Wilkins BM, Chilley PM, Thomas AT, Pocklington M (1996) Distribution of restriction enzyme recognition sequences on broad host range plasmid RP4: molecular and evolutionary implications. J Mol Biol 258: 447–456PubMedCrossRefGoogle Scholar
  76. Williams DR, Thomas CM (1992) Active partitioning of bacterial plasmids. J Gen Microbiol 138: 1–16PubMedGoogle Scholar
  77. Williams DR, Mottalebi-Veshareh M, Thomas CM (1993) Multifunctional repressor KorB can block transcription by preventing isomerisation of RNA polymerasepromoter complexes. Nucl Acids Res 21: 1141–1148PubMedCrossRefGoogle Scholar
  78. Yakobson EA, Guiney DG (1983) Homology of the transfer origins of broad host range IncP plasmids: definition of two subgroups of P plasmids. Mol Gen Genet 192: 436–438PubMedCrossRefGoogle Scholar
  79. Zatyka M, Jagura-Burdzy G, Thomas CM (1994). Regulation of the transfer genes of promiscuous IncPa plasmid RK2: repression of Tral region transcription by relaxasome proteins and by the Tra2 regulator TrbA. Microbiol 140: 2981–2990CrossRefGoogle Scholar

Copyright information

© Springer-Verlag Berlin Heidelberg 1998

Authors and Affiliations

  • Christopher M. Thomas
    • 1
  • Grazyna Jagura-Burdzy
    • 1
    • 2
  • Kalliope Kostelidou
    • 1
  • Peter Thorsted
    • 1
  • Malgorzata Zatyka
    • 1
    • 2
  1. 1.School of Biological SciencesThe University of BirminghamBirminghamUK
  2. 2.Department of Microbial Physiology, Institute of Biochemistry and BiophysicsPolish Academy of SciencesWarsawPoland

Personalised recommendations