Design and Synthesis of Organic Molecules Based on Molecular Recognition
Abstract
A great deal of work has been carried out by chemists, physicists and physical chemistry in order to gain a better understanding of the principles determining specific molecular interaction [1–3]. The biologist, of course, is well aware of specific biological reactions in practically every field of study in which he is involved. Specific biological reactions occur in many of the vital life processes, such as the interactions between enzymes and their corresponding substrates and inhibitors, between hormones and their receptors, between antibodies and antigens, and between cell and cell. Powerful physical techniques such as X-ray and NMR have made it possible to determine on an atomic level the conformation of some important biopolymers — enzymes, antibodies and nucleic acids — and to shed new light on the atomic structure of the molecular domains responsible for the specific interactions exhibited by these macromolecules. Furthermore, analysis of the conformation of specific biopolymer-ligand complexes, using the above techniques, has opened up new possibilities for the evaluation of the forces and energetics involved, and led to the elucidation of some of the molecular mechanisms that characterize biocatalysis.
Keywords
Guest Molecule Reverse Micelle Molecular Recognition Molecular Biologist Streptomyces GriseusPreview
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References
- 1.Chapeville, F., Haenni, A.-L., editors (1980) Chemical recognition in biology. Molecular Biology, Biochemistry and Biophysics 32, 1-430, Springer Verlag, Berlin, New YorkGoogle Scholar
- 2.Katchalski-Katzir, E. (1983) Some general considerations on the recognition by and of proteins. In: Affinity Chromatography and Biological Recognition ( Chaiken, I. M., Wilchek, M., Parikh, I., editors), pp. 7–26, New York: Academic PressGoogle Scholar
- 3.Sussman, J., Traub, W., Yonath, A., editors (1981) Structural Aspects of Recognition and Assembly in Biological Macromolecules. Vol. 1, 1-485. Vol. 2, 486–961. Rehovot, Philadelphia: Balaban International Science ServicesGoogle Scholar
- 4.Levitt, M. (1982) The Weizmann Institute of Science, private communicationGoogle Scholar
- 5.Levitt, M. (1982) Ann. Rev. Biophys. Bioeng. 11, 251–271CrossRefGoogle Scholar
- 6.Levitt, M. (1983) J. Mol. Biol. 168, 595–620CrossRefGoogle Scholar
- 7.Levitt, M. (1983) J. Mol. Biol. 168, 621–657Google Scholar
- 8.Phillips, D. C. (1966) Sei. Amer. 215, 78–90Google Scholar
- 9.Ford, L. O., Johnson, L. N., Mackin, P. A., Phillips, D. C., Tjian, R. (1974) J. Mol. Biol. 88, 349–371CrossRefGoogle Scholar
- 10.Bode, W. (1979) J. Mol. Biol. 127, 357–374CrossRefGoogle Scholar
- 11.Bennett, W. S., Jr., Steitz, T. A. (1980) J. Mol. Biol. 140, 211–230CrossRefGoogle Scholar
- 12.Eklund, H., Samama, J.-P., Wallen, L., Braenden, C.-I., Akeson, A., Jones, T. A. (1981) J. Mol. Biol. 146, 561–587CrossRefGoogle Scholar
- 13.Remington, S., Wiegand, G., Huber, R. (1982) J. Mol. Biol. 158, 111–152CrossRefGoogle Scholar
- 14.Luisi, P. L. (1979) Naturwissenschaften 66, 498–504CrossRefGoogle Scholar
- 15.Jackoby, W. B., Wilchek, M. (editors) (1974) Affinity Techniques, Enzyme Purification: Part B, Methods in Enzymology 34, 1–755, New York: Academic PressGoogle Scholar
- 16.Kopperschläger, G., Böhme, H.-I., Hofman, E. (1982) Cibacron blue F3G-A and related dyes as ligands in affinity chromatography. In: Advances in Biochemical Engineering ( Fichter, A., editor), 25, 101–138, Berlin: Springer-VerlagGoogle Scholar
- 17.James, M. N. G., Brayer, G. D., Delbaere, L. T. J., Sielecki, A. R., Gertler, A. (1980) J. Mol. Biol. 139, 423–438Google Scholar
- 18.James, M. N. G., Sielecki, A. R., Brayer, G. D., Delbaere, L. T. J., Bauer, C. A. (1981) Covalent and noncovalent interaction in the active site of SGPA seen at 1.8 Ä resolution. In: Structural Aspects of Recognition and Assembly in Biological Macromolecules. Vol. 1 ( Sussman, J., Traub, W., Yonath, A., editors), pp. 1–18, Rehovot, Philadelphia: Balaban International Science ServicesGoogle Scholar
- 19.Sarma, R. H., editor (1981) Biomolecular Stereodynamics, Vol. 1, 1–470, New York: Adenine PressGoogle Scholar
- 20.Sarma, R. H., editor (1981) Biomolecular Stereodynamics, Vol. 2,1–498, New York: Adenine PressGoogle Scholar
- 21.Katchalski-Katzir, E. (1983) Biopolymers 22, 579–586CrossRefGoogle Scholar
- 22.Goodman, M., editor (1983) Peptides, Polypeptides and Proteins: Interactions and their Biological Implications ( Symposium ), Biopolymers 22, 1–586Google Scholar
- 23.Huber, R., Bennett, W. S. (1983) Biopolymers 22, 261–279CrossRefGoogle Scholar
- 24.Huber, R., Deisenhofer, J., Colman, P. M., Matushima, M., Palm, W. (1976) Nature (London) 264, 415–420CrossRefGoogle Scholar
- 25.Marquart, M., Deisenhofer, J., Huber, R., Palm, W. (1980) J. Mol. Biol. 141, 369–391CrossRefGoogle Scholar
- 26.Köhler, G., Milstein, C. (1975) Nature 256, 495–497CrossRefGoogle Scholar
- 27.Haber, E. (1983) Antibodies as in-vivo diagnostic and therapeutic agents. In: Affinity Chromatography and Biological Recognition ( Chaiken, I. M., Wilchek, M., Parikh, I. (editors), pp. 317–330. New York: Academic PressGoogle Scholar
- 28.Smith, T. W., Butler, V. P., Jr., Haber, E., Fozzard, H., Marcus, F. L., Bremner, W. F., Schulman, I. C., Phillips, A. (1982) N. England J. Med. 307, 1357CrossRefGoogle Scholar
- 29.Lerner, R. A. (1983) Sei. Amer. 248, 48–56Google Scholar
- 30.Celada, F., Strom, R. (1983) Biopolymers 22, 465–473CrossRefGoogle Scholar
- 31.Solomon, B., Moav, N., Pines, G., Katchalski-Katzir, E. (1984) Mol. Immunol. 21, 1–11CrossRefGoogle Scholar
- 32.Kaiser, E. T., Kezdy, F. J. (1984) Science 223, 249–255CrossRefGoogle Scholar
- 33.Blanc, J. P., Taylor, J. W., Miller, R. J., Kaiser, E. T. (1983) J. Biol. Chem. 258, 8277–8284Google Scholar
- 34.Jencks, W. P. (1980) What every one wanted to know about tight binding and enzyme catalysis, but never thought of asking. In: Molecular Biology, Biochemistry and Biophysics (Chapeville, F., Haenni, A. L., editors), Vol. 32, 3–25Google Scholar
- 35.Luisi, P. L., Meier, P., Wolf, R. (1980) Properties of enzymes solubilized in hydrocarbons via reverse micelles. In: Enzyme Engineering, Vol. 5 (Weetall, H. H., Royer, G. P., editors), New York: Plenum Publishing CoGoogle Scholar
- 36.Addadi, L., Berkovitch-Yellin, Z., Domb, N., Gati, E., Lahav, M., Leiserowitz, L. (1982) Nature 296, 21–26CrossRefGoogle Scholar
- 37.Berkovitch-Yellin, Z., Addadi, L., Idelson, M., Leiserowitz, L., Lahav, M. (1982) Nature 296, 27–34CrossRefGoogle Scholar
- 38.Ovchinikov, Y. A. (1979) Europ. J. Biochem. 94, 321–336CrossRefGoogle Scholar
- 39.Smith, G. D., Duax, V. L., Längs, D. A., De Titta, G. T., Edmonds, J. W., Rohrer, D. C., Weeks, C. M. (1975) J. Amer. Chem. Soc. 97, 7242–7247CrossRefGoogle Scholar
- 40.Weber, E., Vögte, F. (1981) Crown-type Compounds - An introduetory overview. In: Host- Guest Complex Chemistry I. Topics in Current Chemistry 98, 1–41 ( Vögte, F., editor). Berlin: Springer-VerlagGoogle Scholar
- 41.Wipff, G., Kollman, P. A., Lehn, J. M. (1983) J. Mol. Struc. 93, 153–165CrossRefGoogle Scholar
- 42.Lehn, J.-M. (1979) Pure and Applied Chemistry, Vol. 51, 979–997CrossRefGoogle Scholar
- 43.Cram, D. J., Trueblood, K. N. (1981) Concept, strueture, and binding in complexation. In: Host-Guest Complex Chemistry I (Vögte, F., editor). Topics in Current Chemistry 98, pp. 43–106, Berlin: Springer-VerlagCrossRefGoogle Scholar
- 44.Cram, D. J., Katz, H. E. (1983) J. Amer. Chem. Soc. 105, 135–137CrossRefGoogle Scholar
- 45.Breslow, R. (1972) Chem. Soc. Rev. 1, 553–580Google Scholar
- 46.Breslow, R. (1980) Acc. Chem. Res. 13, 170–177Google Scholar
- 47.Breslow, R., Campbell, P. (1969) J. Amer. Chem. Soc. 91, 3085Google Scholar
- 48.Breslow, R., Campbell, P. (1971) Bioorg. Chem. 1, 140–156CrossRefGoogle Scholar
- 49.Osborn, J. A., Jardine, F. H., Young, J. F., Wilkinson, G. (1966) J. Chem. Soc. A, 1711–1732Google Scholar
- 50.Gallagher, N. J., Jenkins, I. D. (1968) In: Topics in Stereochemistry, Vol. 3, Chapter 1 ( Allinger, N. L., Eliel, E. L., editors), New York: Wiley & SonsGoogle Scholar
- 51.Bosnich, B., Fryzuk, M. D. (1981) Asymmetrie synthesis mediated by transition metal com- plexes. Topics in Stereochemistry 12, 119–154 ( Geoffry, G. L., editor), New York: Wiley & SonsGoogle Scholar
- 52.Halperin, J. (1982) Science 217, 401–407CrossRefGoogle Scholar