Analyzing Hemagglutinin Genes of Human H5N1 Virus by Linear Neighborhood Embedding

  • Wei-Chen Cheng
Part of the Lecture Notes in Computer Science book series (LNCS, volume 7802)

Abstract

This work proposes using linear neighborhood embedding to visualize the distribution of viral genes in a two-dimensional space. The gradient descent algorithm for the embedding is described and the behavior of the algorithm is analyzed.

Keywords

LRE DNA influenza population immunological distance 

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Copyright information

© Springer-Verlag Berlin Heidelberg 2013

Authors and Affiliations

  • Wei-Chen Cheng
    • 1
  1. 1.Institute of Statistical ScienceAcademia SinicaTaiwan, Republic of China

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