Incremental DNA Sequence Analysis in the Cloud

  • Romeo Kienzler
  • Rémy Bruggmann
  • Anand Ranganathan
  • Nesime Tatbul
Part of the Lecture Notes in Computer Science book series (LNCS, volume 7338)

Abstract

In this paper, we propose to demonstrate a “stream-as-you-go” approach that minimizes the data transfer time of data- and compute-intensive scientific applications deployed in the cloud, by making them incrementally processable. We describe a system that implements this approach based on the IBM InfoSphere Streams computing platform deployed over Amazon EC2. The functionality, performance, and usability of the system will be demonstrated through two DNA sequence analysis applications.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2012

Authors and Affiliations

  • Romeo Kienzler
    • 1
  • Rémy Bruggmann
    • 2
  • Anand Ranganathan
    • 3
  • Nesime Tatbul
    • 1
  1. 1.Department of Computer ScienceETH ZurichSwitzerland
  2. 2.Bioinformatics, Department of BiologyUniversity of BernSwitzerland
  3. 3.IBM T.J. Watson Research CenterUSA

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