On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites

  • David Reboiro-Jato
  • Miguel Reboiro-Jato
  • Florentino Fdez-Riverola
  • Nuno A. Fonseca
  • Jorge Vieira
Part of the Advances in Intelligent and Soft Computing book series (AINSC, volume 154)

Abstract

In this paper we present the ADOPS (Automatic Detection Of Positively Selected Sites) software that is ideal for research projects involving the analysis of tens of genes. ADOPS is a novel software pipeline that is being implemented with the goal of providing an automatic and flexible tool for detecting positively selected sites given a set of unaligned nucleotide sequence data.

Keywords

Positively selected sites Adaptation Phylogenetics Software integration 

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Copyright information

© Springer-Verlag Berlin Heidelberg 2012

Authors and Affiliations

  • David Reboiro-Jato
    • 1
  • Miguel Reboiro-Jato
    • 1
  • Florentino Fdez-Riverola
    • 1
  • Nuno A. Fonseca
    • 2
    • 3
  • Jorge Vieira
    • 4
  1. 1.Departamento de InformáticaUniversidade de VigoVigoSpain
  2. 2.CRACS-INESC Porto LAUniversidade do PortoPortoPortugal
  3. 3.EMBL-European Bioinformatics InstituteCambridgeUK
  4. 4.Instituto de Biologia Molecular e CelularUniversidade do PortoPortoPortugal

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